RLG00000021233

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0001427
Physical Location & Seq
Forward (+)
73145858 .. 73146943
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021233

Sequence Viewer

Length: 1086 bp
ATGGCGCCTTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACCATGGCCGTCATCCTCGCCGCCATCGCAATCTCCATGACCCTCCGCTCCGACCCCACCGCCCAAACCCCACAATCCGCCACACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAAGAACTCTCCGGGCCTCCGGCTTCACCGTCACGGCGGCGCTCCTCCAAATCTCGCCGGAGCTCTTCCTCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCGACTCCCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCGCCGATCAGGGTTTCGATCGAGGACCTGATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAGAAGAACGTCGCGGTCACAAGAATTGATCGGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAATCTGTTTCTAGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCGTTCGCGGCTGTGGATCCCGAATATGACGTCATTCACGCGCCTGTGTGCCACTCCAATTCGAGTAACGTTTCTGGTGCTGGTGGATTGAAGAAGAAGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACCATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGCCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGCTTACACACAAGGAGCTTTCGGCATTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATTCCGGAATTGGTCATCAATGGAGTGAGGATCGAGGCGCCCGACATCTATTCTTCGAACAATTTGGTTGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAATACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

362

Amino Acids

39.65

Weight (kDa)

9.65

Isoelectric Point (pI)

46.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 255 - 351 7e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
AccB1I GGYRCC 2 cut(s) 4, 1000
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 3 cut(s) 425, 542, 575
AccIII TCCGGA 1 cut(s) 967
AciI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
AclI AACGTT 1 cut(s) 603
AclWI GGATC 5 cut(s) 501, 514, 545, 558, 1001
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 3 cut(s) 5, 564, 1001
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 2 cut(s) 475, 541
AgsI TTSAA 2 cut(s) 625, 743
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 7 cut(s) 232, 684, 762, 796, 803, 880, 1052
AluI AGCT 7 cut(s) 232, 684, 762, 796, 803, 880, 1052
Alw21I GWGCWC 4 cut(s) 234, 686, 764, 805
Alw26I GTCTC 2 cut(s) 312, 484
AlwI GGATC 5 cut(s) 501, 514, 545, 558, 1001
AlwNI CAGNNNCTG 1 cut(s) 937
Ama87I CYCGRG 1 cut(s) 1047
Aor13HI TCCGGA 1 cut(s) 967
AoxI GGCC 4 cut(s) 60, 183, 532, 818
ApeKI GCWGC 1 cut(s) 715
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AspLEI GCGC 5 cut(s) 7, 167, 211, 577, 1003
AspS9I GGNCC 4 cut(s) 183, 364, 457, 533
AsuC2I CCSGG 2 cut(s) 182, 470
AsuHPI GGTGA 4 cut(s) 187, 299, 938, 1072
AsuII TTCGAA 1 cut(s) 1019
AvaI CYCGRG 1 cut(s) 1047
AvaII GGWCC 2 cut(s) 364, 457
BamHI GGATCC 2 cut(s) 506, 550
BanI GGYRCC 2 cut(s) 4, 1000
BanII GRGCYC 4 cut(s) 234, 686, 764, 805
Bbv12I GWGCWC 4 cut(s) 234, 686, 764, 805
BbvI GCAGC 1 cut(s) 702
BccI CCATC 5 cut(s) 86, 149, 266, 364, 725
BceAI ACGGC 4 cut(s) 47, 219, 538, 685
BcgI CGANNNNNNTGC 2 cut(s) 886, 920
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 2 cut(s) 182, 470
BcoDI GTCTC 2 cut(s) 312, 484
BfaI CTAG 1 cut(s) 500
BfoI RGCGCY 4 cut(s) 8, 168, 212, 1004
BglI GCCNNNNNGGC 1 cut(s) 862
BisI GCNGC 4 cut(s) 75, 207, 543, 716
BlpI GCTNAGC 1 cut(s) 680
BlsI GCNGC 4 cut(s) 76, 208, 544, 717
Bme1390I CCNGG 2 cut(s) 182, 470
Bme18I GGWCC 2 cut(s) 364, 457
BmeT110I CYCGRG 1 cut(s) 1047
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 183, 364, 457, 533
BmiI GGNNCC 4 cut(s) 6, 508, 552, 1002
BmrFI CCNGG 2 cut(s) 182, 470
BmrI ACTGGG 1 cut(s) 957
BmuI ACTGGG 1 cut(s) 957
BplI GAGNNNNNCTC 2 cut(s) 309, 341
Bpu10I CCTNAGC 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 1019
BpuEI CTTGAG 3 cut(s) 154, 366, 848
BpuMI CCSGG 2 cut(s) 182, 470
BsaHI GRCGYC 3 cut(s) 5, 564, 1001
BsaI GGTCTC 2 cut(s) 312, 484
BsaJI CCNNGG 3 cut(s) 57, 815, 1036
BsaWI WCCGGW 2 cut(s) 408, 967
Bsc4I CCNNNNNNNGG 2 cut(s) 475, 541
Bse1I ACTGG 1 cut(s) 952
Bse3DI GCAATG 2 cut(s) 655, 887
BseAI TCCGGA 1 cut(s) 967
BseDI CCNNGG 3 cut(s) 57, 815, 1036
BseGI GGATG 2 cut(s) 66, 811
BseLI CCNNNNNNNGG 2 cut(s) 475, 541
BseMI GCAATG 2 cut(s) 655, 887
BseMII CTCAG 5 cut(s) 175, 328, 671, 872, 922
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 5 cut(s) 203, 232, 294, 302, 314
BseXI GCAGC 1 cut(s) 702
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 3 cut(s) 425, 542, 575
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 4 cut(s) 62, 185, 534, 820
BshNI GGYRCC 2 cut(s) 4, 1000
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 4 cut(s) 234, 686, 764, 805
BsiHKCI CYCGRG 1 cut(s) 1047
BsiSI CCGG 6 cut(s) 181, 189, 227, 409, 469, 968
BslI CCNNNNNNNGG 2 cut(s) 475, 541
BsmAI GTCTC 2 cut(s) 312, 484
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 4 cut(s) 62, 185, 534, 820
Bso31I GGTCTC 2 cut(s) 312, 484
BsoBI CYCGRG 1 cut(s) 1047
Bsp119I TTCGAA 1 cut(s) 1019
Bsp1286I GDGCHC 4 cut(s) 234, 686, 764, 805
Bsp13I TCCGGA 1 cut(s) 967
Bsp143I GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
Bsp1720I GCTNAGC 1 cut(s) 680
Bsp19I CCATGG 2 cut(s) 57, 1036
BspACI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
BspANI GGCC 4 cut(s) 62, 185, 534, 820
BspCNI CTCAG 5 cut(s) 174, 327, 672, 871, 921
BspEI TCCGGA 1 cut(s) 967
BspFNI CGCG 3 cut(s) 425, 542, 575
BspLI GGNNCC 4 cut(s) 6, 508, 552, 1002
BspPI GGATC 5 cut(s) 501, 514, 545, 558, 1001
BspQI GCTCTTC 2 cut(s) 239, 638
BspT104I TTCGAA 1 cut(s) 1019
BspT107I GGYRCC 2 cut(s) 4, 1000
BspTNI GGTCTC 2 cut(s) 312, 484
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 655, 887
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 3 cut(s) 57, 815, 1036
BssMI GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
BssNI GRCGYC 3 cut(s) 5, 564, 1001
BssT1I CCWWGG 2 cut(s) 57, 1036
Bst4CI ACNGT 2 cut(s) 199, 457
Bst6I CTCTTC 2 cut(s) 239, 638
BstACI GRCGYC 3 cut(s) 5, 564, 1001
BstAPI GCANNNNNTGC 1 cut(s) 893
BstBI TTCGAA 1 cut(s) 1019
BstC8I GCNNGC 4 cut(s) 35, 39, 395, 894
BstDEI CTNAG 5 cut(s) 161, 314, 680, 858, 908
BstDSI CCRYGG 2 cut(s) 57, 1036
BstF5I GGATG 2 cut(s) 66, 811
BstFNI CGCG 3 cut(s) 425, 542, 575
BstH2I RGCGCY 4 cut(s) 8, 168, 212, 1004
BstHHI GCGC 5 cut(s) 7, 167, 211, 577, 1003
BstKTI GATC 9 cut(s) 348, 360, 442, 465, 509, 553, 931, 996, 1069
BstMAI GTCTC 2 cut(s) 312, 484
BstMBI GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 80, 531, 862, 893
BstSCI CCNGG 2 cut(s) 180, 468
BstUI CGCG 3 cut(s) 425, 542, 575
BstV1I GCAGC 1 cut(s) 702
BstX2I RGATCY 2 cut(s) 506, 550
BstYI RGATCY 2 cut(s) 506, 550
BsuRI GGCC 4 cut(s) 62, 185, 534, 820
BtgI CCRYGG 2 cut(s) 57, 1036
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 2 cut(s) 66, 811
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 4 cut(s) 35, 39, 395, 894
CaiI CAGNNNCTG 1 cut(s) 937
CfoI GCGC 5 cut(s) 7, 167, 211, 577, 1003
Cfr13I GGNCC 4 cut(s) 183, 364, 457, 533
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 4 cut(s) 58, 91, 923, 1037
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 5 cut(s) 161, 314, 680, 858, 908
DinI GGCGCC 2 cut(s) 6, 1002
DpnI GATC 9 cut(s) 347, 359, 441, 464, 508, 552, 930, 995, 1068
DpnII GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
DraIII CACNNNGTG 1 cut(s) 853
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 239, 638
EarI CTCTTC 2 cut(s) 239, 638
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 4 cut(s) 232, 684, 762, 803
Eco130I CCWWGG 2 cut(s) 57, 1036
Eco24I GRGCYC 4 cut(s) 234, 686, 764, 805
Eco31I GGTCTC 2 cut(s) 312, 484
Eco47I GGWCC 2 cut(s) 364, 457
Eco53kI GAGCTC 4 cut(s) 232, 684, 762, 803
Eco88I CYCGRG 1 cut(s) 1047
EcoICRI GAGCTC 4 cut(s) 232, 684, 762, 803
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 57, 1036
EcoT38I GRGCYC 4 cut(s) 234, 686, 764, 805
EgeI GGCGCC 2 cut(s) 6, 1002
EheI GGCGCC 2 cut(s) 6, 1002
ErhI CCWWGG 2 cut(s) 57, 1036
FaeI CATG 4 cut(s) 61, 94, 926, 1040
FaiI YATR 8 cut(s) 44, 59, 92, 561, 917, 924, 956, 1038
FatI CATG 4 cut(s) 57, 90, 922, 1036
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 4 cut(s) 75, 207, 543, 716
FokI GGATG 2 cut(s) 53, 798
FriOI GRGCYC 4 cut(s) 234, 686, 764, 805
Fsp4HI GCNGC 4 cut(s) 75, 207, 543, 716
FspBI CTAG 1 cut(s) 500
GlaI GCGC 5 cut(s) 6, 166, 210, 576, 1002
GluI GCNGC 4 cut(s) 75, 207, 543, 716
HaeII RGCGCY 4 cut(s) 8, 168, 212, 1004
HaeIII GGCC 4 cut(s) 62, 185, 534, 820
HapII CCGG 6 cut(s) 181, 189, 227, 409, 469, 968
HhaI GCGC 5 cut(s) 7, 167, 211, 577, 1003
Hin1I GRCGYC 3 cut(s) 5, 564, 1001
Hin1II CATG 4 cut(s) 61, 94, 926, 1040
Hin6I GCGC 5 cut(s) 5, 165, 209, 575, 1001
HinP1I GCGC 5 cut(s) 5, 165, 209, 575, 1001
HinfI GANTC 7 cut(s) 275, 400, 448, 490, 517, 736, 901
HpaII CCGG 6 cut(s) 181, 189, 227, 409, 469, 968
HphI GGTGA 4 cut(s) 187, 299, 938, 1072
Hpy188I TCNGA 6 cut(s) 106, 317, 444, 453, 666, 861
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 18, 497
HpyCH4III ACNGT 2 cut(s) 199, 457
HpyCH4IV ACGT 4 cut(s) 150, 420, 564, 603
HpyCH4V TGCA 3 cut(s) 27, 707, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 531, 862, 893
HpyF3I CTNAG 5 cut(s) 161, 314, 680, 858, 908
HpySE526I ACGT 4 cut(s) 150, 420, 564, 603
Hsp92I GRCGYC 3 cut(s) 5, 564, 1001
Hsp92II CATG 4 cut(s) 61, 94, 926, 1040
HspAI GCGC 5 cut(s) 5, 165, 209, 575, 1001
KasI GGCGCC 2 cut(s) 4, 1000
Kpn2I TCCGGA 1 cut(s) 967
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
LguI GCTCTTC 2 cut(s) 239, 638
LmnI GCTCC 6 cut(s) 107, 216, 229, 793, 800, 877
Lsp1109I GCAGC 1 cut(s) 702
MaeI CTAG 1 cut(s) 500
MaeII ACGT 4 cut(s) 150, 420, 564, 603
MaeIII GTNAC 5 cut(s) 199, 427, 599, 766, 943
MalI GATC 9 cut(s) 347, 359, 441, 464, 508, 552, 930, 995, 1068
MbiI CCGCTC 1 cut(s) 102
MboI GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 506, 550
MhlI GDGCHC 4 cut(s) 234, 686, 764, 805
MluCI AATT 5 cut(s) 435, 592, 708, 971, 1024
Mly113I GGCGCC 2 cut(s) 5, 1001
MlyI GAGTC 3 cut(s) 269, 394, 895
MmeI TCCRAC 3 cut(s) 129, 312, 644
MroI TCCGGA 1 cut(s) 967
MslI CAYNNNNRTG 1 cut(s) 776
MspA1I CMGCKG 1 cut(s) 33
MspI CCGG 6 cut(s) 181, 189, 227, 409, 469, 968
MspR9I CCNGG 2 cut(s) 182, 470
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 718
MvnI CGCG 3 cut(s) 425, 542, 575
MwoI GCNNNNNNNGC 4 cut(s) 80, 531, 862, 893
NarI GGCGCC 2 cut(s) 5, 1001
NciI CCSGG 2 cut(s) 182, 470
NcoI CCATGG 2 cut(s) 57, 1036
NdeII GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
NlaIII CATG 4 cut(s) 61, 94, 926, 1040
NlaIV GGNNCC 4 cut(s) 6, 508, 552, 1002
NmeAIII GCCGAG 1 cut(s) 796
NmuCI GTSAC 4 cut(s) 199, 427, 766, 943
NspV TTCGAA 1 cut(s) 1019
PciSI GCTCTTC 2 cut(s) 239, 638
PcsI WCGNNNNNNNCGW 2 cut(s) 270, 1002
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 4 cut(s) 448, 490, 517, 736
PkrI GCNGC 4 cut(s) 76, 208, 544, 717
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 3 cut(s) 269, 394, 895
PluTI GGCGCC 2 cut(s) 8, 1004
PpsI GAGTC 3 cut(s) 269, 394, 895
PpuMI RGGWCCY 1 cut(s) 364
Psp124BI GAGCTC 4 cut(s) 234, 686, 764, 805
Psp1406I AACGTT 1 cut(s) 603
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 4 cut(s) 6, 508, 552, 1002
PspPI GGNCC 4 cut(s) 183, 364, 457, 533
PspPPI RGGWCCY 1 cut(s) 364
PstNI CAGNNNCTG 1 cut(s) 937
PsuI RGATCY 2 cut(s) 506, 550
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 1 cut(s) 776
SacI GAGCTC 4 cut(s) 234, 686, 764, 805
SapI GCTCTTC 2 cut(s) 239, 638
SatI GCNGC 4 cut(s) 75, 207, 543, 716
Sau3AI GATC 9 cut(s) 345, 357, 439, 462, 506, 550, 928, 993, 1066
Sau96I GGNCC 4 cut(s) 183, 364, 457, 533
SchI GAGTC 3 cut(s) 269, 394, 895
ScrFI CCNGG 2 cut(s) 182, 470
SduI GDGCHC 4 cut(s) 234, 686, 764, 805
SfoI GGCGCC 2 cut(s) 6, 1002
SfuI TTCGAA 1 cut(s) 1019
SinI GGWCC 2 cut(s) 364, 457
SmiMI CAYNNNNRTG 1 cut(s) 776
SmlI CTYRAG 3 cut(s) 169, 381, 827
SmoI CTYRAG 3 cut(s) 169, 381, 827
Sse9I AATT 5 cut(s) 435, 592, 708, 971, 1024
SsiI CCGC 8 cut(s) 31, 75, 100, 114, 132, 206, 425, 542
SspDI GGCGCC 2 cut(s) 4, 1000
SspMI CTAG 1 cut(s) 500
SstI GAGCTC 4 cut(s) 234, 686, 764, 805
StyD4I CCNGG 2 cut(s) 180, 468
StyI CCWWGG 2 cut(s) 57, 1036
TaaI ACNGT 2 cut(s) 199, 457
TaiI ACGT 4 cut(s) 153, 423, 567, 606
TaqI TCGA 7 cut(s) 356, 360, 515, 596, 996, 1019, 1056
TasI AATT 5 cut(s) 435, 592, 708, 971, 1024
TauI GCSGC 3 cut(s) 77, 209, 545
TfiI GAWTC 4 cut(s) 448, 490, 517, 736
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 4 cut(s) 199, 427, 766, 943
TseI GCWGC 1 cut(s) 715
Tsp45I GTSAC 4 cut(s) 199, 427, 766, 943
TspDTI ATGAA 2 cut(s) 911, 952
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 952
VpaK11BI GGWCC 2 cut(s) 364, 457
XbaI TCTAGA 1 cut(s) 499
XspI CTAG 1 cut(s) 500
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.