Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

42013678 .. 42017433

Gene Structure 3756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG166600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGCCTCTTCTTCTTCCTACTGCACCCGTTGGCACGCCATACTCTACTCCACCATGGCTGTCATCCTCGCCGCCATCGTAATCTCCATGACCCTCCGCACCGACCCCATCGCCCAAACCCCTAAATCCGCCACACCCATCAGCCACAGTGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCAGATTGTTTGGTTGCTGAGCTTAAAGGGGTTTGTGCCCTTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAAAGGCTTAGACACAGGGAGCTTTCGGCCTTACCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCTTCAATGGATTCGCCCTCGAAAGTGTTTCGCCGAGCTCGTTGAAGGACAAGGTTTATAGGATCTTCTGCAGGGAAAAGCGTAAGCTCGCCAGTAGAAAGGTACATGGTGACATGCATATTCTAGACATTGCTGTGGATTTGCCTTCTGTGACTGAAATTTTCGGGTCAAAATATTCAACTACTCTTCTCTGCACTCGATTAAGATGTCAGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTCTGTTGGTTCTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAATTGATTGGGTATGCTGGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

276

Amino Acids

31.05

Weight (kDa)

9.44

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	442
AccI	GTMKAC	1 cut(s)	788
AciI	CCGC	4 cut(s)	72, 97, 129, 257
AclWI	GGATC	1 cut(s)	587
AcsI	RAATTY	1 cut(s)	675
AdeI	CACNNNGTG	1 cut(s)	394
AfaI	GTAC	1 cut(s)	621
AgsI	TTSAA	5 cut(s)	175, 284, 523, 562, 696
AluBI	AGCT	8 cut(s)	225, 303, 337, 344, 421, 555, 604, 804
AluI	AGCT	8 cut(s)	225, 303, 337, 344, 421, 555, 604, 804
Alw21I	GWGCWC	3 cut(s)	305, 346, 557
AlwI	GGATC	1 cut(s)	587
AlwNI	CAGNNNCTG	1 cut(s)	478
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	4 cut(s)	3, 254, 426, 741
ApoI	RAATTY	1 cut(s)	675
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	2 cut(s)	479, 638
AvaI	CYCGRG	1 cut(s)	357
BaeGI	GKGCMC	1 cut(s)	243
BanII	GRGCYC	3 cut(s)	305, 346, 557
BbsI	GAAGAC	1 cut(s)	511
Bbv12I	GWGCWC	3 cut(s)	305, 346, 557
BccI	CCATC	4 cut(s)	83, 116, 146, 266
BcgI	CGANNNNNNTGC	2 cut(s)	427, 461
BclI	TGATCA	1 cut(s)	469
BfaI	CTAG	1 cut(s)	641
BfmI	CTRYAG	1 cut(s)	586
BfuAI	ACCTGC	1 cut(s)	442
BglI	GCCNNNNNGGC	1 cut(s)	403
BisI	GCNGC	2 cut(s)	72, 257
BlpI	GCTNAGC	1 cut(s)	221
BlsI	GCNGC	2 cut(s)	73, 258
BmeT110I	CYCGRG	1 cut(s)	357
BmgT120I	GGNCC	1 cut(s)	254
BmrI	ACTGGG	1 cut(s)	498
BmuI	ACTGGG	1 cut(s)	498
BpiI	GAAGAC	1 cut(s)	511
Bpu10I	CCTNAGC	1 cut(s)	449
Bpu1102I	GCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	389
BsaJI	CCNNGG	2 cut(s)	54, 356
Bse118I	RCCGGY	1 cut(s)	739
Bse1I	ACTGG	2 cut(s)	493, 609
Bse3DI	GCAATG	2 cut(s)	196, 645
BseDI	CCNNGG	2 cut(s)	54, 356
BseGI	GGATG	2 cut(s)	63, 352
BseMI	GCAATG	2 cut(s)	196, 645
BseMII	CTCAG	2 cut(s)	212, 463
BseNI	ACTGG	2 cut(s)	493, 609
BseSI	GKGCMC	1 cut(s)	243
BseYI	CCCAGC	1 cut(s)	822
BsgI	GTGCAG	2 cut(s)	7, 694
BshFI	GGCC	4 cut(s)	5, 256, 428, 743
BsiHKAI	GWGCWC	3 cut(s)	305, 346, 557
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	509, 740
BsmI	GAATGC	1 cut(s)	259
BsnI	GGCC	4 cut(s)	5, 256, 428, 743
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	4 cut(s)	243, 305, 346, 557
Bsp143I	GATC	4 cut(s)	469, 579, 729, 748
Bsp1720I	GCTNAGC	1 cut(s)	221
Bsp19I	CCATGG	1 cut(s)	54
BspACI	CCGC	4 cut(s)	72, 97, 129, 257
BspANI	GGCC	4 cut(s)	5, 256, 428, 743
BspCNI	CTCAG	2 cut(s)	213, 462
BspMAI	CTGCAG	1 cut(s)	590
BspMI	ACCTGC	1 cut(s)	442
BspPI	GGATC	1 cut(s)	587
BspQI	GCTCTTC	1 cut(s)	179
BsrDI	GCAATG	2 cut(s)	196, 645
BsrFI	RCCGGY	1 cut(s)	739
BsrI	ACTGG	2 cut(s)	493, 609
BssAI	RCCGGY	1 cut(s)	739
BssECI	CCNNGG	2 cut(s)	54, 356
BssMI	GATC	4 cut(s)	469, 579, 729, 748
BssT1I	CCWWGG	1 cut(s)	54
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	3 cut(s)	13, 179, 708
BstC8I	GCNNGC	2 cut(s)	36, 606
BstDEI	CTNAG	3 cut(s)	221, 407, 449
BstDSI	CCRYGG	1 cut(s)	54
BstF5I	GGATG	2 cut(s)	63, 352
BstKTI	GATC	4 cut(s)	472, 582, 732, 751
BstMBI	GATC	4 cut(s)	469, 579, 729, 748
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 434
BstNSI	RCATGY	1 cut(s)	634
BstSFI	CTRYAG	1 cut(s)	586
BstSLI	GKGCMC	1 cut(s)	243
BstV2I	GAAGAC	1 cut(s)	511
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BsuRI	GGCC	4 cut(s)	5, 256, 428, 743
BtgI	CCRYGG	1 cut(s)	54
BtgZI	GCGATG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	63, 352
BtsIMutI	CAGTG	2 cut(s)	154, 486
BveI	ACCTGC	1 cut(s)	442
Cac8I	GCNNGC	2 cut(s)	36, 606
CaiI	CAGNNNCTG	1 cut(s)	478
Cfr10I	RCCGGY	1 cut(s)	739
Cfr13I	GGNCC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	620
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	6 cut(s)	55, 88, 464, 505, 623, 631
CviQI	GTAC	1 cut(s)	620
DdeI	CTNAG	3 cut(s)	221, 407, 449
DpnI	GATC	4 cut(s)	471, 581, 731, 750
DpnII	GATC	4 cut(s)	469, 579, 729, 748
DraIII	CACNNNGTG	1 cut(s)	394
Eam1104I	CTCTTC	3 cut(s)	13, 179, 708
EarI	CTCTTC	3 cut(s)	13, 179, 708
EciI	GGCGGA	1 cut(s)	118
Ecl136II	GAGCTC	3 cut(s)	303, 344, 555
Eco130I	CCWWGG	1 cut(s)	54
Eco24I	GRGCYC	3 cut(s)	305, 346, 557
Eco53kI	GAGCTC	3 cut(s)	303, 344, 555
Eco88I	CYCGRG	1 cut(s)	357
EcoICRI	GAGCTC	3 cut(s)	303, 344, 555
EcoT14I	CCWWGG	1 cut(s)	54
EcoT22I	ATGCAT	1 cut(s)	636
EcoT38I	GRGCYC	3 cut(s)	305, 346, 557
ErhI	CCWWGG	1 cut(s)	54
FaeI	CATG	6 cut(s)	58, 91, 467, 508, 626, 634
FatI	CATG	6 cut(s)	54, 87, 463, 504, 622, 630
FbaI	TGATCA	1 cut(s)	469
FblI	GTMKAC	1 cut(s)	788
Fnu4HI	GCNGC	2 cut(s)	72, 257
FokI	GGATG	2 cut(s)	50, 339
FriOI	GRGCYC	3 cut(s)	305, 346, 557
Fsp4HI	GCNGC	2 cut(s)	72, 257
FspBI	CTAG	1 cut(s)	641
GluI	GCNGC	2 cut(s)	72, 257
GsaI	CCCAGC	1 cut(s)	826
HaeIII	GGCC	4 cut(s)	5, 256, 428, 743
HapII	CCGG	2 cut(s)	509, 740
Hin1II	CATG	6 cut(s)	58, 91, 467, 508, 626, 634
HinfI	GANTC	3 cut(s)	277, 442, 528
HpaII	CCGG	2 cut(s)	509, 740
HphI	GGTGA	2 cut(s)	479, 638
Hpy166II	GTNNAC	1 cut(s)	789
Hpy188I	TCNGA	3 cut(s)	207, 729, 748
Hpy188III	TCNNGA	5 cut(s)	269, 281, 451, 479, 641
Hpy8I	GTNNAC	1 cut(s)	789
HpyAV	CCTTC	2 cut(s)	556, 672
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4V	TGCA	5 cut(s)	24, 248, 588, 634, 711
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 434
HpyF3I	CTNAG	3 cut(s)	221, 407, 449
Hsp92II	CATG	6 cut(s)	58, 91, 467, 508, 626, 634
Ksp22I	TGATCA	1 cut(s)	469
Kzo9I	GATC	4 cut(s)	469, 579, 729, 748
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	3 cut(s)	334, 341, 418
MaeI	CTAG	1 cut(s)	641
MaeIII	GTNAC	4 cut(s)	307, 484, 626, 667
MalI	GATC	4 cut(s)	471, 581, 731, 750
MboI	GATC	4 cut(s)	469, 579, 729, 748
MfeI	CAATTG	2 cut(s)	249, 807
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	4 cut(s)	243, 305, 346, 557
MluCI	AATT	4 cut(s)	249, 512, 675, 807
MlyI	GAGTC	1 cut(s)	436
Mph1103I	ATGCAT	1 cut(s)	636
MseI	TTAA	3 cut(s)	227, 719, 829
MslI	CAYNNNNRTG	1 cut(s)	650
MspI	CCGG	2 cut(s)	509, 740
MunI	CAATTG	2 cut(s)	249, 807
Mva1269I	GAATGC	1 cut(s)	259
MwoI	GCNNNNNNNGC	2 cut(s)	403, 434
NcoI	CCATGG	1 cut(s)	54
NdeII	GATC	4 cut(s)	469, 579, 729, 748
NlaIII	CATG	6 cut(s)	58, 91, 467, 508, 626, 634
NmeAIII	GCCGAG	1 cut(s)	576
NmuCI	GTSAC	4 cut(s)	307, 484, 626, 667
NsiI	ATGCAT	1 cut(s)	636
NspI	RCATGY	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	179
PcsI	WCGNNNNNNNCGW	2 cut(s)	75, 554
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	2 cut(s)	277, 528
PkrI	GCNGC	2 cut(s)	73, 258
PleI	GAGTC	1 cut(s)	436
PpsI	GAGTC	1 cut(s)	436
Psp124BI	GAGCTC	3 cut(s)	305, 346, 557
PspFI	CCCAGC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	254
PstI	CTGCAG	1 cut(s)	590
PstNI	CAGNNNCTG	1 cut(s)	478
PsuI	RGATCY	1 cut(s)	579
RsaI	GTAC	1 cut(s)	621
RsaNI	GTAC	1 cut(s)	620
RseI	CAYNNNNRTG	1 cut(s)	650
SacI	GAGCTC	3 cut(s)	305, 346, 557
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	227, 719, 829
SatI	GCNGC	2 cut(s)	72, 257
Sau3AI	GATC	4 cut(s)	469, 579, 729, 748
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	436
SduI	GDGCHC	4 cut(s)	243, 305, 346, 557
SfcI	CTRYAG	1 cut(s)	586
SmiMI	CAYNNNNRTG	1 cut(s)	650
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	4 cut(s)	249, 512, 675, 807
SsiI	CCGC	4 cut(s)	72, 97, 129, 257
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	1 cut(s)	641
SstI	GAGCTC	3 cut(s)	305, 346, 557
StyI	CCWWGG	1 cut(s)	54
TaaI	ACNGT	1 cut(s)	149
TaqI	TCGA	2 cut(s)	537, 715
TasI	AATT	4 cut(s)	249, 512, 675, 807
TauI	GCSGC	2 cut(s)	74, 259
TfiI	GAWTC	2 cut(s)	277, 528
Tru1I	TTAA	3 cut(s)	227, 719, 829
Tru9I	TTAA	3 cut(s)	227, 719, 829
TscAI	CASTG	2 cut(s)	154, 493
TseFI	GTSAC	4 cut(s)	307, 484, 626, 667
Tsp45I	GTSAC	4 cut(s)	307, 484, 626, 667
TspDTI	ATGAA	2 cut(s)	452, 493
TspRI	CASTG	2 cut(s)	154, 493
XapI	RAATTY	1 cut(s)	675
XbaI	TCTAGA	1 cut(s)	640
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	788
XspI	CTAG	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.