Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

72365658 .. 72366320

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAGAAGCCTCAAGGTTCTTACTTGCCAACTCTGTACCGGAAAAAGAGCCTCGTGATCATGAGAATTGATCGGAAGAATCAGACTGTCCAGATCAACTGGATTCACGGCGTTCTTGGCCCCTTCGCGGCTATGGATCCCAATTATGATGTCATTCAGGCGCCTGTGTGCGAGTCCAATTTGAGTGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCGGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGAGTTTATGAGTTTCATGCCGGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

182

Amino Acids

20.36

Weight (kDa)

8.71

Isoelectric Point (pI)

27.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	160, 508
AccII	CGCG	1 cut(s)	128
AciI	CCGC	2 cut(s)	128, 293
AclWI	GGATC	3 cut(s)	131, 144, 509
AcyI	GRCGYC	2 cut(s)	161, 509
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	211, 320, 490, 528
AluBI	AGCT	5 cut(s)	261, 339, 373, 380, 538
AluI	AGCT	5 cut(s)	261, 339, 373, 380, 538
Alw21I	GWGCWC	3 cut(s)	263, 341, 382
AlwI	GGATC	3 cut(s)	131, 144, 509
AlwNI	CAGNNNCTG	1 cut(s)	445
Ama87I	CYCGRG	2 cut(s)	393, 533
AoxI	GGCC	2 cut(s)	118, 290
AspLEI	GCGC	2 cut(s)	163, 511
AspS9I	GGNCC	2 cut(s)	119, 290
AsuHPI	GGTGA	2 cut(s)	355, 446
AvaI	CYCGRG	2 cut(s)	393, 533
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	160, 508
BanII	GRGCYC	3 cut(s)	263, 341, 382
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	3 cut(s)	263, 341, 382
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	2 cut(s)	124, 262
BclI	TGATCA	2 cut(s)	57, 436
BfoI	RGCGCY	2 cut(s)	164, 512
BisI	GCNGC	2 cut(s)	129, 293
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	130, 294
BmeT110I	CYCGRG	2 cut(s)	393, 533
BmgT120I	GGNCC	2 cut(s)	119, 290
BmiI	GGNNCC	4 cut(s)	121, 138, 162, 510
BpiI	GAAGAC	1 cut(s)	478
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	2 cut(s)	161, 509
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	248, 447
BseNI	ACTGG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	120, 292
BshNI	GGYRCC	2 cut(s)	160, 508
BsiHKAI	GWGCWC	3 cut(s)	263, 341, 382
BsiHKCI	CYCGRG	2 cut(s)	393, 533
BsiSI	CCGG	2 cut(s)	40, 476
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	2 cut(s)	120, 292
BsoBI	CYCGRG	2 cut(s)	393, 533
Bsp1286I	GDGCHC	3 cut(s)	263, 341, 382
Bsp143I	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	128, 293
BspANI	GGCC	2 cut(s)	120, 292
BspCNI	CTCAG	2 cut(s)	249, 448
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	121, 138, 162, 510
BspPI	GGATC	3 cut(s)	131, 144, 509
BspQI	GCTCTTC	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	160, 508
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
BssNI	GRCGYC	2 cut(s)	161, 509
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	161, 509
BstDEI	CTNAG	2 cut(s)	257, 456
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	2 cut(s)	164, 512
BstHHI	GCGC	2 cut(s)	163, 511
BstKTI	GATC	6 cut(s)	60, 73, 96, 139, 439, 504
BstMBI	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
BstMWI	GCNNNNNNNGC	1 cut(s)	117
BstUI	CGCG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	478
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	2 cut(s)	120, 292
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	453
CaiI	CAGNNNCTG	1 cut(s)	445
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	2 cut(s)	163, 511
Cfr13I	GGNCC	2 cut(s)	119, 290
Csp6I	GTAC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	3 cut(s)	61, 431, 472
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	2 cut(s)	257, 456
DinI	GGCGCC	2 cut(s)	162, 510
DpnI	GATC	6 cut(s)	59, 72, 95, 138, 438, 503
DpnII	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	3 cut(s)	261, 339, 380
Eco24I	GRGCYC	3 cut(s)	263, 341, 382
Eco53kI	GAGCTC	3 cut(s)	261, 339, 380
Eco88I	CYCGRG	2 cut(s)	393, 533
EcoICRI	GAGCTC	3 cut(s)	261, 339, 380
EcoT38I	GRGCYC	3 cut(s)	263, 341, 382
EgeI	GGCGCC	2 cut(s)	162, 510
EheI	GGCGCC	2 cut(s)	162, 510
FaeI	CATG	3 cut(s)	64, 434, 475
FaiI	YATR	7 cut(s)	62, 134, 147, 425, 432, 464, 473
FatI	CATG	3 cut(s)	60, 430, 471
FbaI	TGATCA	2 cut(s)	57, 436
Fnu4HI	GCNGC	2 cut(s)	129, 293
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	3 cut(s)	263, 341, 382
Fsp4HI	GCNGC	2 cut(s)	129, 293
GlaI	GCGC	2 cut(s)	162, 510
GluI	GCNGC	2 cut(s)	129, 293
HaeII	RGCGCY	2 cut(s)	164, 512
HaeIII	GGCC	2 cut(s)	120, 292
HapII	CCGG	2 cut(s)	40, 476
HhaI	GCGC	2 cut(s)	163, 511
Hin1I	GRCGYC	2 cut(s)	161, 509
Hin1II	CATG	3 cut(s)	64, 434, 475
Hin6I	GCGC	2 cut(s)	161, 509
HinP1I	GCGC	2 cut(s)	161, 509
HinfI	GANTC	4 cut(s)	79, 103, 173, 313
HpaII	CCGG	2 cut(s)	40, 476
HphI	GGTGA	2 cut(s)	355, 446
Hpy188I	TCNGA	3 cut(s)	75, 84, 243
Hpy188III	TCNNGA	6 cut(s)	55, 61, 91, 305, 317, 446
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	1 cut(s)	117
HpyF3I	CTNAG	2 cut(s)	257, 456
Hsp92I	GRCGYC	2 cut(s)	161, 509
Hsp92II	CATG	3 cut(s)	64, 434, 475
HspAI	GCGC	2 cut(s)	161, 509
KasI	GGCGCC	2 cut(s)	160, 508
Ksp22I	TGATCA	2 cut(s)	57, 436
Kzo9I	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	2 cut(s)	370, 377
MaeIII	GTNAC	2 cut(s)	343, 451
MalI	GATC	6 cut(s)	59, 72, 95, 138, 438, 503
MboI	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
MboII	GAAGA	9 cut(s)	88, 223, 226, 229, 232, 332, 421, 478, 516
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	263, 341, 382
MluCI	AATT	5 cut(s)	66, 142, 178, 285, 479
Mly113I	GGCGCC	2 cut(s)	161, 509
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	21, 62, 402, 411, 453, 492, 537
MspI	CCGG	2 cut(s)	40, 476
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	295
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	117
NarI	GGCGCC	2 cut(s)	161, 509
NdeII	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
NlaIII	CATG	3 cut(s)	64, 434, 475
NlaIV	GGNNCC	4 cut(s)	121, 138, 162, 510
NmuCI	GTSAC	2 cut(s)	343, 451
PagI	TCATGA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	79, 103, 313
PkrI	GCNGC	2 cut(s)	130, 294
PleI	GAGTC	1 cut(s)	181
PluTI	GGCGCC	2 cut(s)	164, 512
PpsI	GAGTC	1 cut(s)	181
Psp124BI	GAGCTC	3 cut(s)	263, 341, 382
PspN4I	GGNNCC	4 cut(s)	121, 138, 162, 510
PspPI	GGNCC	2 cut(s)	119, 290
PstNI	CAGNNNCTG	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	3 cut(s)	263, 341, 382
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	129, 293
Sau3AI	GATC	6 cut(s)	57, 70, 93, 136, 436, 501
Sau96I	GGNCC	2 cut(s)	119, 290
SchI	GAGTC	1 cut(s)	182
SduI	GDGCHC	3 cut(s)	263, 341, 382
SetI	ASST	7 cut(s)	19, 263, 341, 375, 382, 540, 548
SfoI	GGCGCC	2 cut(s)	162, 510
SmlI	CTYRAG	2 cut(s)	12, 404
SmoI	CTYRAG	2 cut(s)	12, 404
Sse9I	AATT	5 cut(s)	66, 142, 178, 285, 479
SsiI	CCGC	2 cut(s)	128, 293
SspDI	GGCGCC	2 cut(s)	160, 508
SstI	GAGCTC	3 cut(s)	263, 341, 382
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	542
TasI	AATT	5 cut(s)	66, 142, 178, 285, 479
TauI	GCSGC	2 cut(s)	131, 295
TfiI	GAWTC	3 cut(s)	79, 103, 313
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	343, 451
Tsp45I	GTSAC	2 cut(s)	343, 451
TspDTI	ATGAA	2 cut(s)	419, 460
TspRI	CASTG	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.