Rmu_sc0012217.1_g000005

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012217.1
OG0001427
Physical Location & Seq
Forward (+)
8564 .. 9643
1080 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012217.1_g000005.1.cds

Sequence Viewer

Length: 1080 bp
atggcgtcttcttcttcttcctactgcacccgctggcacgccatactctactccaccatggccgtaatcctcgccgccatcgcaatctccatgaccctccgctccgaccccaccgcccaaaccccccaatccgccacacccatcagccacgtcatctctctcagcgcctcaagaactctccgggcctccggcttcaccgtcaccgcggcgctcctccaaatctcgccggagctcttcctctcctccccgaactccaccatctttgcaatcgccgactcccacatctccaacgcctctctccctcctcacctcctcagagacctcctcaaataccacacctcgccgattagggtttcgatcgaggacctgatggagaagcctcaaggttcttgcttgccgactctgtaccggaaaaagaacgtcgcggttacaagaattgatcggaagaatcggacggtccagatcaaccgggtttgggtctcgcacccgaatctgtttctagaaggatccgtttcgattcacggcgttcttggcccgttcgccgctgtggatcccgaatatgacgtcattcacgcgcctgtgtgcgactccaattctagcgtcgtttctggttctggtggagtgaagcacaagaagaagagcaatgtggaatggggtcggattattaggttgctgagctcaaaggggtttgtgccgtttgcaattgggctgcattctgttcttgatgggattcttgaagatgagagaaatgtgagctctgtgacgatttttgtgccgccaagattggagcttggagctcatcatcatcctcgggctttgcttgagaagattgtgaggtttcacattgtgcctcagaggcttacacacagggagctttcggcattgcctgcgaggactctgctcaggactatggttcatggtgatcagcctttggaagtcactgggtttatgagtttcatgccggaattggtcatcaatggagtgaggattgtggcgcccgacatctattcttcgaacaacttggttgtccatgggatttcccgagcttttgaggtgaatgatctgcctaaaacccaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

359

Amino Acids

39.37

Weight (kDa)

9.54

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
AccB1I GGYRCC 1 cut(s) 994
AccBSI CCGCTC 1 cut(s) 102
AccII CGCG 3 cut(s) 206, 425, 575
AclWI GGATC 4 cut(s) 501, 514, 545, 558
AcoI YGGCCR 1 cut(s) 60
AcyI GRCGYC 3 cut(s) 5, 564, 995
AdeI CACNNNGTG 1 cut(s) 847
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 1 cut(s) 475
AgsI TTSAA 1 cut(s) 737
AjiI CACGTC 1 cut(s) 151
AluBI AGCT 7 cut(s) 232, 678, 756, 790, 797, 874, 1046
AluI AGCT 7 cut(s) 232, 678, 756, 790, 797, 874, 1046
Alw21I GWGCWC 4 cut(s) 234, 680, 758, 799
Alw26I GTCTC 2 cut(s) 312, 484
AlwI GGATC 4 cut(s) 501, 514, 545, 558
Ama87I CYCGRG 2 cut(s) 810, 1041
AoxI GGCC 3 cut(s) 60, 183, 532
ApeKI GCWGC 1 cut(s) 709
ArsI GACNNNNNNTTYG 2 cut(s) 549, 581
AspLEI GCGC 4 cut(s) 167, 211, 577, 997
AspS9I GGNCC 4 cut(s) 183, 364, 457, 533
AsuC2I CCSGG 2 cut(s) 182, 470
AsuHPI GGTGA 5 cut(s) 187, 193, 299, 932, 1066
AsuII TTCGAA 1 cut(s) 1013
AvaI CYCGRG 2 cut(s) 810, 1041
AvaII GGWCC 2 cut(s) 364, 457
BamHI GGATCC 2 cut(s) 506, 550
BanI GGYRCC 1 cut(s) 994
BanII GRGCYC 4 cut(s) 234, 680, 758, 799
Bbv12I GWGCWC 4 cut(s) 234, 680, 758, 799
BbvI GCAGC 1 cut(s) 696
BccI CCATC 5 cut(s) 86, 149, 266, 364, 719
BceAI ACGGC 3 cut(s) 47, 538, 679
BcgI CGANNNNNNTGC 4 cut(s) 754, 788, 880, 914
BclI TGATCA 1 cut(s) 922
BcnI CCSGG 2 cut(s) 182, 470
BcoDI GTCTC 2 cut(s) 312, 484
BfaI CTAG 2 cut(s) 500, 597
BfoI RGCGCY 3 cut(s) 168, 212, 998
BglI GCCNNNNNGGC 1 cut(s) 856
BisI GCNGC 5 cut(s) 75, 207, 543, 710, 776
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 5 cut(s) 76, 208, 544, 711, 777
Bme1390I CCNGG 2 cut(s) 182, 470
Bme18I GGWCC 2 cut(s) 364, 457
BmeT110I CYCGRG 2 cut(s) 810, 1041
BmgBI CACGTC 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 183, 364, 457, 533
BmiI GGNNCC 3 cut(s) 508, 552, 996
BmrFI CCNGG 2 cut(s) 182, 470
BmrI ACTGGG 1 cut(s) 951
BmuI ACTGGG 1 cut(s) 951
BplI GAGNNNNNCTC 2 cut(s) 309, 341
Bpu10I CCTNAGC 1 cut(s) 902
Bpu1102I GCTNAGC 1 cut(s) 674
Bpu14I TTCGAA 1 cut(s) 1013
BpuEI CTTGAG 3 cut(s) 154, 366, 842
BpuMI CCSGG 2 cut(s) 182, 470
BsaHI GRCGYC 3 cut(s) 5, 564, 995
BsaI GGTCTC 2 cut(s) 312, 484
BsaJI CCNNGG 4 cut(s) 57, 204, 809, 1030
BsaWI WCCGGW 1 cut(s) 408
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse1I ACTGG 1 cut(s) 946
Bse3DI GCAATG 2 cut(s) 649, 881
BseDI CCNNGG 4 cut(s) 57, 204, 809, 1030
BseGI GGATG 1 cut(s) 805
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMI GCAATG 2 cut(s) 649, 881
BseMII CTCAG 5 cut(s) 175, 328, 665, 866, 916
BseNI ACTGG 1 cut(s) 946
BseRI GAGGAG 5 cut(s) 203, 232, 294, 302, 314
BseXI GCAGC 1 cut(s) 696
BsgI GTGCAG 1 cut(s) 10
Bsh1236I CGCG 3 cut(s) 206, 425, 575
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 3 cut(s) 62, 185, 534
BshNI GGYRCC 1 cut(s) 994
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 4 cut(s) 234, 680, 758, 799
BsiHKCI CYCGRG 2 cut(s) 810, 1041
BsiSI CCGG 6 cut(s) 181, 189, 227, 409, 469, 962
BslI CCNNNNNNNGG 1 cut(s) 475
BsmAI GTCTC 2 cut(s) 312, 484
BsmI GAATGC 1 cut(s) 712
BsnI GGCC 3 cut(s) 62, 185, 534
Bso31I GGTCTC 2 cut(s) 312, 484
BsoBI CYCGRG 2 cut(s) 810, 1041
Bsp119I TTCGAA 1 cut(s) 1013
Bsp1286I GDGCHC 4 cut(s) 234, 680, 758, 799
Bsp143I GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
Bsp1720I GCTNAGC 1 cut(s) 674
Bsp19I CCATGG 2 cut(s) 57, 1030
BspANI GGCC 3 cut(s) 62, 185, 534
BspCNI CTCAG 5 cut(s) 174, 327, 666, 865, 915
BspFNI CGCG 3 cut(s) 206, 425, 575
BspLI GGNNCC 3 cut(s) 508, 552, 996
BspPI GGATC 4 cut(s) 501, 514, 545, 558
BspQI GCTCTTC 2 cut(s) 239, 632
BspT104I TTCGAA 1 cut(s) 1013
BspT107I GGYRCC 1 cut(s) 994
BspTNI GGTCTC 2 cut(s) 312, 484
BsrBI CCGCTC 1 cut(s) 102
BsrDI GCAATG 2 cut(s) 649, 881
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 4 cut(s) 57, 204, 809, 1030
BssMI GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
BssNI GRCGYC 3 cut(s) 5, 564, 995
BssT1I CCWWGG 2 cut(s) 57, 1030
Bst4CI ACNGT 2 cut(s) 199, 457
Bst6I CTCTTC 2 cut(s) 239, 632
BstACI GRCGYC 3 cut(s) 5, 564, 995
BstAPI GCANNNNNTGC 1 cut(s) 887
BstBI TTCGAA 1 cut(s) 1013
BstC8I GCNNGC 4 cut(s) 35, 39, 395, 888
BstDEI CTNAG 5 cut(s) 161, 314, 674, 852, 902
BstDSI CCRYGG 3 cut(s) 57, 204, 1030
BstF5I GGATG 1 cut(s) 805
BstFNI CGCG 3 cut(s) 206, 425, 575
BstH2I RGCGCY 3 cut(s) 168, 212, 998
BstHHI GCGC 4 cut(s) 167, 211, 577, 997
BstKTI GATC 7 cut(s) 360, 442, 465, 509, 553, 925, 1063
BstMAI GTCTC 2 cut(s) 312, 484
BstMBI GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
BstMCI CGRYCG 1 cut(s) 360
BstMWI GCNNNNNNNGC 4 cut(s) 80, 531, 856, 887
BstSCI CCNGG 2 cut(s) 180, 468
BstUI CGCG 3 cut(s) 206, 425, 575
BstV1I GCAGC 1 cut(s) 696
BstX2I RGATCY 2 cut(s) 506, 550
BstYI RGATCY 2 cut(s) 506, 550
BsuRI GGCC 3 cut(s) 62, 185, 534
BtgI CCRYGG 3 cut(s) 57, 204, 1030
BtgZI GCGATG 1 cut(s) 64
BtrI CACGTC 1 cut(s) 151
BtsCI GGATG 1 cut(s) 805
BtsIMutI CAGTG 1 cut(s) 939
Cac8I GCNNGC 4 cut(s) 35, 39, 395, 888
CfoI GCGC 4 cut(s) 167, 211, 577, 997
Cfr13I GGNCC 4 cut(s) 183, 364, 457, 533
Cfr42I CCGCGG 1 cut(s) 207
CseI GACGC 1 cut(s) 589
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 244, 279
CviAII CATG 5 cut(s) 58, 91, 917, 958, 1031
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 5 cut(s) 161, 314, 674, 852, 902
DinI GGCGCC 1 cut(s) 996
DpnI GATC 7 cut(s) 359, 441, 464, 508, 552, 924, 1062
DpnII GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
DraIII CACNNNGTG 1 cut(s) 847
EaeI YGGCCR 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 239, 632
EarI CTCTTC 2 cut(s) 239, 632
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 4 cut(s) 232, 678, 756, 797
Eco130I CCWWGG 2 cut(s) 57, 1030
Eco24I GRGCYC 4 cut(s) 234, 680, 758, 799
Eco31I GGTCTC 2 cut(s) 312, 484
Eco47I GGWCC 2 cut(s) 364, 457
Eco53kI GAGCTC 4 cut(s) 232, 678, 756, 797
Eco88I CYCGRG 2 cut(s) 810, 1041
EcoICRI GAGCTC 4 cut(s) 232, 678, 756, 797
EcoO109I RGGNCCY 1 cut(s) 364
EcoT14I CCWWGG 2 cut(s) 57, 1030
EcoT38I GRGCYC 4 cut(s) 234, 680, 758, 799
EgeI GGCGCC 1 cut(s) 996
EheI GGCGCC 1 cut(s) 996
ErhI CCWWGG 2 cut(s) 57, 1030
FaeI CATG 5 cut(s) 61, 94, 920, 961, 1034
FaiI YATR 9 cut(s) 44, 59, 92, 561, 911, 918, 950, 959, 1032
FatI CATG 5 cut(s) 57, 90, 916, 957, 1030
FauI CCCGC 1 cut(s) 38
FbaI TGATCA 1 cut(s) 922
Fnu4HI GCNGC 5 cut(s) 75, 207, 543, 710, 776
FokI GGATG 1 cut(s) 792
FriOI GRGCYC 4 cut(s) 234, 680, 758, 799
Fsp4HI GCNGC 5 cut(s) 75, 207, 543, 710, 776
FspBI CTAG 2 cut(s) 500, 597
GlaI GCGC 4 cut(s) 166, 210, 576, 996
GluI GCNGC 5 cut(s) 75, 207, 543, 710, 776
HaeII RGCGCY 3 cut(s) 168, 212, 998
HaeIII GGCC 3 cut(s) 62, 185, 534
HapII CCGG 6 cut(s) 181, 189, 227, 409, 469, 962
HgaI GACGC 1 cut(s) 589
HhaI GCGC 4 cut(s) 167, 211, 577, 997
Hin1I GRCGYC 3 cut(s) 5, 564, 995
Hin1II CATG 5 cut(s) 61, 94, 920, 961, 1034
Hin6I GCGC 4 cut(s) 165, 209, 575, 995
HinP1I GCGC 4 cut(s) 165, 209, 575, 995
HinfI GANTC 8 cut(s) 275, 400, 448, 490, 517, 587, 730, 895
HpaII CCGG 6 cut(s) 181, 189, 227, 409, 469, 962
HphI GGTGA 5 cut(s) 187, 193, 299, 932, 1066
Hpy188I TCNGA 6 cut(s) 106, 317, 444, 453, 660, 855
Hpy188III TCNNGA 8 cut(s) 171, 460, 500, 554, 722, 734, 904, 1041
Hpy99I CGWCG 2 cut(s) 425, 605
HpyAV CCTTC 1 cut(s) 497
HpyCH4III ACNGT 2 cut(s) 199, 457
HpyCH4IV ACGT 3 cut(s) 150, 420, 564
HpyCH4V TGCA 4 cut(s) 27, 266, 701, 712
HpyF10VI GCNNNNNNNGC 4 cut(s) 80, 531, 856, 887
HpyF3I CTNAG 5 cut(s) 161, 314, 674, 852, 902
HpySE526I ACGT 3 cut(s) 150, 420, 564
Hsp92I GRCGYC 3 cut(s) 5, 564, 995
Hsp92II CATG 5 cut(s) 61, 94, 920, 961, 1034
HspAI GCGC 4 cut(s) 165, 209, 575, 995
KasI GGCGCC 1 cut(s) 994
Ksp22I TGATCA 1 cut(s) 922
KspI CCGCGG 1 cut(s) 207
Kzo9I GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
LguI GCTCTTC 2 cut(s) 239, 632
LmnI GCTCC 6 cut(s) 107, 216, 229, 787, 794, 871
Lsp1109I GCAGC 1 cut(s) 696
MaeI CTAG 2 cut(s) 500, 597
MaeII ACGT 3 cut(s) 150, 420, 564
MaeIII GTNAC 4 cut(s) 199, 427, 760, 937
MalI GATC 7 cut(s) 359, 441, 464, 508, 552, 924, 1062
MbiI CCGCTC 1 cut(s) 102
MboI GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
MfeI CAATTG 1 cut(s) 702
MflI RGATCY 2 cut(s) 506, 550
MhlI GDGCHC 4 cut(s) 234, 680, 758, 799
MluCI AATT 4 cut(s) 435, 592, 702, 965
Mly113I GGCGCC 1 cut(s) 995
MlyI GAGTC 4 cut(s) 269, 394, 581, 889
MmeI TCCRAC 3 cut(s) 129, 312, 638
MspA1I CMGCKG 3 cut(s) 33, 206, 545
MspI CCGG 6 cut(s) 181, 189, 227, 409, 469, 962
MspR9I CCNGG 2 cut(s) 182, 470
MunI CAATTG 1 cut(s) 702
Mva1269I GAATGC 1 cut(s) 712
MvnI CGCG 3 cut(s) 206, 425, 575
MwoI GCNNNNNNNGC 4 cut(s) 80, 531, 856, 887
NarI GGCGCC 1 cut(s) 995
NciI CCSGG 2 cut(s) 182, 470
NcoI CCATGG 2 cut(s) 57, 1030
NdeII GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
NlaIII CATG 5 cut(s) 61, 94, 920, 961, 1034
NlaIV GGNNCC 3 cut(s) 508, 552, 996
NmuCI GTSAC 3 cut(s) 199, 760, 937
NspV TTCGAA 1 cut(s) 1013
PciSI GCTCTTC 2 cut(s) 239, 632
PctI GAATGC 1 cut(s) 712
PfeI GAWTC 4 cut(s) 448, 490, 517, 730
PkrI GCNGC 5 cut(s) 76, 208, 544, 711, 777
Ple19I CGATCG 1 cut(s) 360
PleI GAGTC 4 cut(s) 269, 394, 581, 889
PluTI GGCGCC 1 cut(s) 998
PpsI GAGTC 4 cut(s) 269, 394, 581, 889
PpuMI RGGWCCY 1 cut(s) 364
Psp124BI GAGCTC 4 cut(s) 234, 680, 758, 799
Psp5II RGGWCCY 1 cut(s) 364
PspN4I GGNNCC 3 cut(s) 508, 552, 996
PspPI GGNCC 4 cut(s) 183, 364, 457, 533
PspPPI RGGWCCY 1 cut(s) 364
PsuI RGATCY 2 cut(s) 506, 550
PvuI CGATCG 1 cut(s) 360
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
SacI GAGCTC 4 cut(s) 234, 680, 758, 799
SacII CCGCGG 1 cut(s) 207
SapI GCTCTTC 2 cut(s) 239, 632
SatI GCNGC 5 cut(s) 75, 207, 543, 710, 776
Sau3AI GATC 7 cut(s) 357, 439, 462, 506, 550, 922, 1060
Sau96I GGNCC 4 cut(s) 183, 364, 457, 533
SchI GAGTC 4 cut(s) 269, 394, 581, 889
ScrFI CCNGG 2 cut(s) 182, 470
SduI GDGCHC 4 cut(s) 234, 680, 758, 799
SfoI GGCGCC 1 cut(s) 996
Sfr303I CCGCGG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 1013
SgrBI CCGCGG 1 cut(s) 207
SinI GGWCC 2 cut(s) 364, 457
SmlI CTYRAG 3 cut(s) 169, 381, 821
SmoI CTYRAG 3 cut(s) 169, 381, 821
Sse9I AATT 4 cut(s) 435, 592, 702, 965
SspDI GGCGCC 1 cut(s) 994
SspMI CTAG 2 cut(s) 500, 597
SstI GAGCTC 4 cut(s) 234, 680, 758, 799
StyD4I CCNGG 2 cut(s) 180, 468
StyI CCWWGG 2 cut(s) 57, 1030
TaaI ACNGT 2 cut(s) 199, 457
TaiI ACGT 3 cut(s) 153, 423, 567
TaqI TCGA 4 cut(s) 356, 360, 515, 1013
TasI AATT 4 cut(s) 435, 592, 702, 965
TauI GCSGC 4 cut(s) 77, 209, 545, 778
TfiI GAWTC 4 cut(s) 448, 490, 517, 730
TscAI CASTG 1 cut(s) 946
TseFI GTSAC 3 cut(s) 199, 760, 937
TseI GCWGC 1 cut(s) 709
Tsp45I GTSAC 3 cut(s) 199, 760, 937
TspDTI ATGAA 2 cut(s) 905, 946
TspGWI ACGGA 1 cut(s) 499
TspRI CASTG 1 cut(s) 946
VpaK11BI GGWCC 2 cut(s) 364, 457
XbaI TCTAGA 1 cut(s) 499
XspI CTAG 2 cut(s) 500, 597
ZraI GACGTC 1 cut(s) 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.