Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002343.1

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

92394 .. 92780

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002343.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ctggcacgtcatactctactccaccatcgcaatctccatgaccctccgctccgaccccacctcccaaacccccaaatccgccacacccatcaaccacgtatctctctcagcgcctcaagaactctctgggccttcggcttcaccgtcaaggcggcactcctccaaatctcgccggagctcttcctctccttgcctaactccaccatcttcggaatcgctgactcccacatgtccaatgcctctctccctcctcacctcctcagagacctcctcaaataccacacctctccagttagggtttcgatcgaagacctgatggagaagcctcaaggttcttgcttgccgactctatacccggaaaaagagcctcgcgttcacaagaattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

128

Amino Acids

14.56

Weight (kDa)

9.89

Isoelectric Point (pI)

61.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	49
AccII	CGCG	1 cut(s)	372
AciI	CCGC	3 cut(s)	47, 79, 152
AflIII	ACRYGT	1 cut(s)	228
AjiI	CACGTC	1 cut(s)	8
AluBI	AGCT	1 cut(s)	178
AluI	AGCT	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	180
Alw26I	GTCTC	1 cut(s)	258
AoxI	GGCC	1 cut(s)	129
AspLEI	GCGC	1 cut(s)	113
AspS9I	GGNCC	1 cut(s)	129
AsuC2I	CCSGG	1 cut(s)	356
AsuHPI	GGTGA	2 cut(s)	133, 245
BanII	GRGCYC	1 cut(s)	180
BbsI	GAAGAC	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	180
BccI	CCATC	4 cut(s)	33, 96, 212, 310
BcnI	CCSGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	258
BfoI	RGCGCY	1 cut(s)	114
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme1390I	CCNGG	1 cut(s)	356
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	129
BmrFI	CCNGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	315
BplI	GAGNNNNNCTC	2 cut(s)	255, 287
BpmI	CTGGAG	1 cut(s)	273
BpuEI	CTTGAG	2 cut(s)	100, 312
BpuMI	CCSGG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	258
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bse1I	ACTGG	1 cut(s)	290
BseMII	CTCAG	2 cut(s)	121, 274
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	4 cut(s)	149, 240, 248, 260
Bsh1236I	CGCG	1 cut(s)	372
Bsh1285I	CGRYCG	1 cut(s)	306
BshFI	GGCC	1 cut(s)	131
BsiEI	CGRYCG	1 cut(s)	306
BsiHKAI	GWGCWC	1 cut(s)	180
BsiSI	CCGG	2 cut(s)	173, 356
BsmAI	GTCTC	1 cut(s)	258
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	258
Bsp1286I	GDGCHC	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	303
BspACI	CCGC	3 cut(s)	47, 79, 152
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	2 cut(s)	120, 273
BspFNI	CGCG	1 cut(s)	372
BspQI	GCTCTTC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	258
BsrBI	CCGCTC	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	290
BssMI	GATC	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	185
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	341
BstDEI	CTNAG	2 cut(s)	107, 260
BstFNI	CGCG	1 cut(s)	372
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	1 cut(s)	113
BstKTI	GATC	1 cut(s)	306
BstMAI	GTCTC	1 cut(s)	258
BstMBI	GATC	1 cut(s)	303
BstMCI	CGRYCG	1 cut(s)	306
BstNSI	RCATGY	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	372
BstV2I	GAAGAC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	131
BtgZI	GCGATG	1 cut(s)	11
BtrI	CACGTC	1 cut(s)	8
Cac8I	GCNNGC	1 cut(s)	341
CfoI	GCGC	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	129
CviAII	CATG	2 cut(s)	38, 229
CviJI	RGCY	5 cut(s)	131, 138, 178, 325, 367
CviKI_1	RGCY	5 cut(s)	131, 138, 178, 325, 367
DdeI	CTNAG	2 cut(s)	107, 260
DpnI	GATC	1 cut(s)	305
DpnII	GATC	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	185
EarI	CTCTTC	1 cut(s)	185
EciI	GGCGGA	1 cut(s)	68
Ecl136II	GAGCTC	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	180
Eco31I	GGTCTC	1 cut(s)	258
Eco53kI	GAGCTC	1 cut(s)	178
EcoICRI	GAGCTC	1 cut(s)	178
EcoT38I	GRGCYC	1 cut(s)	180
FaeI	CATG	2 cut(s)	41, 232
FaiI	YATR	4 cut(s)	12, 39, 230, 352
FatI	CATG	2 cut(s)	37, 228
Fnu4HI	GCNGC	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	153
GlaI	GCGC	1 cut(s)	112
GluI	GCNGC	1 cut(s)	153
GsuI	CTGGAG	1 cut(s)	273
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	131
HapII	CCGG	2 cut(s)	173, 356
HhaI	GCGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	41, 232
Hin6I	GCGC	1 cut(s)	111
HinP1I	GCGC	1 cut(s)	111
HinfI	GANTC	3 cut(s)	213, 221, 346
HpaII	CCGG	2 cut(s)	173, 356
HphI	GGTGA	2 cut(s)	133, 245
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	53, 212, 263
Hpy188III	TCNNGA	1 cut(s)	117
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	1 cut(s)	142
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	7, 97
HpyF3I	CTNAG	2 cut(s)	107, 260
HpySE526I	ACGT	2 cut(s)	7, 97
Hsp92II	CATG	2 cut(s)	41, 232
HspAI	GCGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	303
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	2 cut(s)	54, 175
LpnPI	CCDG	5 cut(s)	112, 186, 303, 326, 369
MaeII	ACGT	2 cut(s)	7, 97
MalI	GATC	1 cut(s)	305
MbiI	CCGCTC	1 cut(s)	49
MboI	GATC	1 cut(s)	303
MboII	GAAGA	3 cut(s)	172, 199, 320
MhlI	GDGCHC	1 cut(s)	180
MluCI	AATT	1 cut(s)	382
MlyI	GAGTC	2 cut(s)	215, 340
MmeI	TCCRAC	1 cut(s)	76
MspI	CCGG	2 cut(s)	173, 356
MspR9I	CCNGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	372
NciI	CCSGG	1 cut(s)	356
NdeII	GATC	1 cut(s)	303
NlaIII	CATG	2 cut(s)	41, 232
NspI	RCATGY	1 cut(s)	232
PciI	ACATGT	1 cut(s)	228
PciSI	GCTCTTC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	154
Ple19I	CGATCG	1 cut(s)	306
PleI	GAGTC	2 cut(s)	215, 340
PpsI	GAGTC	2 cut(s)	215, 340
Ppu21I	YACGTR	1 cut(s)	98
PscI	ACATGT	1 cut(s)	228
Psp124BI	GAGCTC	1 cut(s)	180
PspPI	GGNCC	1 cut(s)	129
PvuI	CGATCG	1 cut(s)	306
SacI	GAGCTC	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	185
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	1 cut(s)	303
Sau96I	GGNCC	1 cut(s)	129
SchI	GAGTC	2 cut(s)	215, 340
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	180
SetI	ASST	9 cut(s)	10, 63, 100, 180, 258, 270, 287, 315, 334
SmlI	CTYRAG	2 cut(s)	115, 327
SmoI	CTYRAG	2 cut(s)	115, 327
Sse9I	AATT	1 cut(s)	382
SsiI	CCGC	3 cut(s)	47, 79, 152
SstI	GAGCTC	1 cut(s)	180
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	10, 100
TaqI	TCGA	2 cut(s)	302, 306
TasI	AATT	1 cut(s)	382
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	213
XceI	RCATGY	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.