RchiOBHm_Chr2g0160671

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001427
Physical Location & Seq
Forward (+)
76592527 .. 76599288
6762 bp
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UTR
Exon/CDS
Intron
PRQ52909

Sequence Viewer

Length: 471 bp
ATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGAGCCTCGCGGTCACGAGAATTGATCGGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAACCTGTTTCTAGAAGGATCCATTTCGATTCACGGCGTTCTTGGCCCGTTCGCGGCCGTGGATCCCGAATATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTCCAGCGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAACAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTAGGTTGCTGAGCTCAAAGGGTTTTGTGCTGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

156

Amino Acids

17.35

Weight (kDa)

9.71

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccII CGCG 3 cut(s) 56, 173, 206
AciI CCGC 2 cut(s) 56, 173
AclWI GGATC 4 cut(s) 132, 145, 176, 189
AcoI YGGCCR 1 cut(s) 174
AcyI GRCGYC 1 cut(s) 195
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 2 cut(s) 106, 172
AgsI TTSAA 2 cut(s) 256, 371
AluBI AGCT 4 cut(s) 312, 390, 426, 433
AluI AGCT 4 cut(s) 312, 390, 426, 433
Alw21I GWGCWC 3 cut(s) 314, 392, 435
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 4 cut(s) 132, 145, 176, 189
Ama87I CYCGRG 1 cut(s) 446
AoxI GGCC 2 cut(s) 163, 174
ApeKI GCWGC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 2 cut(s) 88, 164
AsuC2I CCSGG 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 446
AvaII GGWCC 1 cut(s) 88
BamHI GGATCC 2 cut(s) 137, 181
BanII GRGCYC 3 cut(s) 314, 392, 435
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 314, 392, 435
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 353
BceAI ACGGC 2 cut(s) 161, 169
BcgI CGANNNNNNTGC 2 cut(s) 388, 422
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 131
BisI GCNGC 2 cut(s) 174, 344
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 2 cut(s) 175, 345
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 446
BmgT120I GGNCC 2 cut(s) 88, 164
BmiI GGNNCC 2 cut(s) 139, 183
BmrFI CCNGG 1 cut(s) 101
Bpu1102I GCTNAGC 1 cut(s) 308
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 195
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 177, 445
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 172
Bse3DI GCAATG 1 cut(s) 283
BseDI CCNNGG 2 cut(s) 177, 445
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 2 cut(s) 106, 172
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 299
BseX3I CGGCCG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 3 cut(s) 56, 173, 206
Bsh1285I CGRYCG 1 cut(s) 177
BshFI GGCC 2 cut(s) 165, 176
BsiEI CGRYCG 1 cut(s) 177
BsiHKAI GWGCWC 3 cut(s) 314, 392, 435
BsiHKCI CYCGRG 1 cut(s) 446
BsiSI CCGG 2 cut(s) 40, 100
BslI CCNNNNNNNGG 2 cut(s) 106, 172
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 2 cut(s) 165, 176
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 1 cut(s) 446
Bsp1286I GDGCHC 3 cut(s) 314, 392, 435
Bsp143I GATC 4 cut(s) 70, 93, 137, 181
Bsp1720I GCTNAGC 1 cut(s) 308
BspACI CCGC 2 cut(s) 56, 173
BspANI GGCC 2 cut(s) 165, 176
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 3 cut(s) 56, 173, 206
BspLI GGNNCC 2 cut(s) 139, 183
BspPI GGATC 4 cut(s) 132, 145, 176, 189
BspQI GCTCTTC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 177, 445
BssMI GATC 4 cut(s) 70, 93, 137, 181
BssNI GRCGYC 1 cut(s) 195
BssSI CACGAG 1 cut(s) 61
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 308
BstDSI CCRYGG 1 cut(s) 177
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 3 cut(s) 56, 173, 206
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 4 cut(s) 73, 96, 140, 184
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 4 cut(s) 70, 93, 137, 181
BstMCI CGRYCG 1 cut(s) 177
BstMWI GCNNNNNNNGC 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 3 cut(s) 56, 173, 206
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 137, 181
BstXI CCANNNNNNTGG 1 cut(s) 420
BstYI RGATCY 2 cut(s) 137, 181
BstZI CGGCCG 1 cut(s) 174
BsuRI GGCC 2 cut(s) 165, 176
BtgI CCRYGG 1 cut(s) 177
BtsCI GGATG 1 cut(s) 441
Cac8I GCNNGC 1 cut(s) 26
CfoI GCGC 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 88, 164
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 37
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 1 cut(s) 308
DpnI GATC 4 cut(s) 72, 95, 139, 183
DpnII GATC 4 cut(s) 70, 93, 137, 181
EaeI YGGCCR 1 cut(s) 174
EagI CGGCCG 1 cut(s) 174
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 3 cut(s) 312, 390, 433
EclXI CGGCCG 1 cut(s) 174
Eco24I GRGCYC 3 cut(s) 314, 392, 435
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 88
Eco52I CGGCCG 1 cut(s) 174
Eco53kI GAGCTC 3 cut(s) 312, 390, 433
Eco88I CYCGRG 1 cut(s) 446
EcoICRI GAGCTC 3 cut(s) 312, 390, 433
EcoT38I GRGCYC 3 cut(s) 314, 392, 435
FaiI YATR 1 cut(s) 192
Fnu4HI GCNGC 2 cut(s) 174, 344
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 3 cut(s) 314, 392, 435
Fsp4HI GCNGC 2 cut(s) 174, 344
FspBI CTAG 1 cut(s) 131
GlaI GCGC 1 cut(s) 207
GluI GCNGC 2 cut(s) 174, 344
HaeIII GGCC 2 cut(s) 165, 176
HapII CCGG 2 cut(s) 40, 100
HgaI GACGC 1 cut(s) 220
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 195
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HinfI GANTC 5 cut(s) 31, 79, 148, 218, 364
HpaII CCGG 2 cut(s) 40, 100
Hpy188I TCNGA 3 cut(s) 75, 84, 294
Hpy188III TCNNGA 6 cut(s) 61, 91, 131, 185, 356, 368
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 335, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 162
HpyF3I CTNAG 1 cut(s) 308
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 1 cut(s) 195
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 4 cut(s) 70, 93, 137, 181
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 423, 430
LpnPI CCDG 8 cut(s) 53, 104, 113, 137, 222, 225, 231, 241
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 58, 394
MalI GATC 4 cut(s) 72, 95, 139, 183
MboI GATC 4 cut(s) 70, 93, 137, 181
MboII GAAGA 6 cut(s) 88, 268, 271, 280, 283, 383
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 137, 181
MhlI GDGCHC 3 cut(s) 314, 392, 435
MluCI AATT 3 cut(s) 66, 223, 336
MlyI GAGTC 2 cut(s) 25, 212
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 3 cut(s) 21, 62, 455
MspI CCGG 2 cut(s) 40, 100
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 3 cut(s) 56, 173, 206
MwoI GCNNNNNNNGC 1 cut(s) 162
NciI CCSGG 1 cut(s) 101
NdeII GATC 4 cut(s) 70, 93, 137, 181
NlaIV GGNNCC 2 cut(s) 139, 183
NmuCI GTSAC 2 cut(s) 58, 394
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 79, 148, 364
PkrI GCNGC 2 cut(s) 175, 345
PleI GAGTC 2 cut(s) 25, 212
PpsI GAGTC 2 cut(s) 25, 212
Psp124BI GAGCTC 3 cut(s) 314, 392, 435
PspN4I GGNNCC 2 cut(s) 139, 183
PspPI GGNCC 2 cut(s) 88, 164
PsuI RGATCY 2 cut(s) 137, 181
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 3 cut(s) 314, 392, 435
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 2 cut(s) 174, 344
Sau3AI GATC 4 cut(s) 70, 93, 137, 181
Sau96I GGNCC 2 cut(s) 88, 164
SchI GAGTC 2 cut(s) 25, 212
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 314, 392, 435
SetI ASST 8 cut(s) 19, 126, 198, 305, 314, 392, 428, 435
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 12, 457
SmoI CTYRAG 2 cut(s) 12, 457
Sse9I AATT 3 cut(s) 66, 223, 336
SsiI CCGC 2 cut(s) 56, 173
SspMI CTAG 1 cut(s) 131
SstI GAGCTC 3 cut(s) 314, 392, 435
StyD4I CCNGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 198
TaqI TCGA 1 cut(s) 146
TasI AATT 3 cut(s) 66, 223, 336
TauI GCSGC 1 cut(s) 176
TfiI GAWTC 3 cut(s) 79, 148, 364
TseFI GTSAC 2 cut(s) 58, 394
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 2 cut(s) 58, 394
VpaK11BI GGWCC 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XspI CTAG 1 cut(s) 131
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.