Rh6DG146500

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0001427
Physical Location & Seq
Reverse (-)
21169928 .. 21171558
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG146500.1

Sequence Viewer

Length: 753 bp
ATGGCGGCACTCCTCCAAATCTCGCCGGAGCTCTTCCGCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCAACTCCCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTTAAATACCACACCTCTCCAGTTAGGGTTTCGATCGAAGACCTGATGGAAAAGCCTCAAGGTTCTTGCTTGCTGACTCTGTACCAGAAAAAGAGCCTCGCGATCACGAGAATTGATCGGAAGAATCGGATGGTCCAGATCAACTGGGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTGGATCCCAATTATGACGTCATTCACGCGCCTATGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGTGGTCGAATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATAAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTAGAGAGCTTCATATATCAGGTTCACTACATCATCCAGATGAATCCAGGAAAACCTACCAAACAAACAAGATCAGTTTTCATGGCAATGCCCTTTTTATTGATCTAAATACCTGTGCTGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

250

Amino Acids

27.7

Weight (kDa)

9.06

Isoelectric Point (pI)

41.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 366
AccBSI CCGCTC 1 cut(s) 39
AccII CGCG 3 cut(s) 224, 341, 374
AciI CCGC 3 cut(s) 5, 37, 341
AclWI GGATC 4 cut(s) 300, 313, 344, 357
AcyI GRCGYC 1 cut(s) 363
AfaI GTAC 1 cut(s) 206
AfiI CCNNNNNNNGG 1 cut(s) 340
AgsI TTSAA 2 cut(s) 424, 533
AjnI CCWGG 1 cut(s) 671
AluBI AGCT 6 cut(s) 31, 474, 552, 586, 593, 634
AluI AGCT 6 cut(s) 31, 474, 552, 586, 593, 634
Alw21I GWGCWC 4 cut(s) 33, 476, 554, 595
Alw26I GTCTC 2 cut(s) 111, 283
AlwI GGATC 4 cut(s) 300, 313, 344, 357
Ama87I CYCGRG 1 cut(s) 606
AoxI GGCC 1 cut(s) 331
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 2 cut(s) 256, 332
AsuHPI GGTGA 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 606
AvaII GGWCC 1 cut(s) 256
BamHI GGATCC 2 cut(s) 305, 349
BanII GRGCYC 4 cut(s) 33, 476, 554, 595
BauI CACGAG 1 cut(s) 229
BbsI GAAGAC 1 cut(s) 168
Bbv12I GWGCWC 4 cut(s) 33, 476, 554, 595
BccI CCATC 4 cut(s) 65, 163, 247, 515
BceAI ACGGC 2 cut(s) 337, 475
BcgI CGANNNNNNTGC 2 cut(s) 550, 584
BciT130I CCWGG 1 cut(s) 673
BcoDI GTCTC 2 cut(s) 111, 283
BisI GCNGC 1 cut(s) 6
BlpI GCTNAGC 1 cut(s) 470
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 673
Bme18I GGWCC 1 cut(s) 256
BmeT110I CYCGRG 1 cut(s) 606
BmgT120I GGNCC 2 cut(s) 256, 332
BmiI GGNNCC 3 cut(s) 307, 334, 351
BmrFI CCNGG 1 cut(s) 673
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 168
BpmI CTGGAG 1 cut(s) 126
Bpu1102I GCTNAGC 1 cut(s) 470
BpuEI CTTGAG 2 cut(s) 165, 638
BsaHI GRCGYC 1 cut(s) 363
BsaI GGTCTC 2 cut(s) 111, 283
BsaJI CCNNGG 1 cut(s) 605
Bsc4I CCNNNNNNNGG 1 cut(s) 340
Bse1I ACTGG 2 cut(s) 143, 272
Bse3DI GCAATG 2 cut(s) 445, 718
BseBI CCWGG 1 cut(s) 673
BseDI CCNNGG 1 cut(s) 605
BseGI GGATG 3 cut(s) 258, 601, 658
BseLI CCNNNNNNNGG 1 cut(s) 340
BseMI GCAATG 2 cut(s) 445, 718
BseMII CTCAG 2 cut(s) 127, 461
BseNI ACTGG 2 cut(s) 143, 272
BseRI GAGGAG 3 cut(s) 31, 93, 101
Bsh1236I CGCG 3 cut(s) 224, 341, 374
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 159
BsiHKAI GWGCWC 4 cut(s) 33, 476, 554, 595
BsiHKCI CYCGRG 1 cut(s) 606
BsiSI CCGG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 340
BsmAI GTCTC 2 cut(s) 111, 283
BsmI GAATGC 1 cut(s) 508
BsnI GGCC 1 cut(s) 333
Bso31I GGTCTC 2 cut(s) 111, 283
BsoBI CYCGRG 1 cut(s) 606
Bsp1286I GDGCHC 4 cut(s) 33, 476, 554, 595
Bsp143I GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
Bsp1720I GCTNAGC 1 cut(s) 470
Bsp68I TCGCGA 1 cut(s) 224
BspACI CCGC 3 cut(s) 5, 37, 341
BspANI GGCC 1 cut(s) 333
BspCNI CTCAG 2 cut(s) 126, 462
BspFNI CGCG 3 cut(s) 224, 341, 374
BspLI GGNNCC 3 cut(s) 307, 334, 351
BspPI GGATC 4 cut(s) 300, 313, 344, 357
BspQI GCTCTTC 2 cut(s) 38, 428
BspTNI GGTCTC 2 cut(s) 111, 283
BsrBI CCGCTC 1 cut(s) 39
BsrDI GCAATG 2 cut(s) 445, 718
BsrI ACTGG 2 cut(s) 143, 272
BssECI CCNNGG 1 cut(s) 605
BssMI GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
BssNI GRCGYC 1 cut(s) 363
BssSI CACGAG 1 cut(s) 229
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 1 cut(s) 673
Bst6I CTCTTC 2 cut(s) 38, 428
BstACI GRCGYC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 194
BstDEI CTNAG 2 cut(s) 113, 470
BstF5I GGATG 3 cut(s) 258, 601, 658
BstFNI CGCG 3 cut(s) 224, 341, 374
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 8 cut(s) 159, 228, 241, 264, 308, 352, 699, 730
BstMAI GTCTC 2 cut(s) 111, 283
BstMBI GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 330
BstNI CCWGG 1 cut(s) 673
BstSCI CCNGG 1 cut(s) 671
BstUI CGCG 3 cut(s) 224, 341, 374
BstV2I GAAGAC 1 cut(s) 168
BstX2I RGATCY 2 cut(s) 305, 349
BstYI RGATCY 2 cut(s) 305, 349
BsuRI GGCC 1 cut(s) 333
BtsCI GGATG 3 cut(s) 258, 601, 658
BtuMI TCGCGA 1 cut(s) 224
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 2 cut(s) 256, 332
Csp6I GTAC 1 cut(s) 205
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 1 cut(s) 707
CviQI GTAC 1 cut(s) 205
DdeI CTNAG 2 cut(s) 113, 470
DpnI GATC 8 cut(s) 158, 227, 240, 263, 307, 351, 698, 729
DpnII GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
Eam1104I CTCTTC 2 cut(s) 38, 428
EarI CTCTTC 2 cut(s) 38, 428
Ecl136II GAGCTC 4 cut(s) 31, 474, 552, 593
Eco24I GRGCYC 4 cut(s) 33, 476, 554, 595
Eco31I GGTCTC 2 cut(s) 111, 283
Eco47I GGWCC 1 cut(s) 256
Eco53kI GAGCTC 4 cut(s) 31, 474, 552, 593
Eco88I CYCGRG 1 cut(s) 606
EcoICRI GAGCTC 4 cut(s) 31, 474, 552, 593
EcoRII CCWGG 1 cut(s) 671
EcoT38I GRGCYC 4 cut(s) 33, 476, 554, 595
FaeI CATG 1 cut(s) 710
FaiI YATR 5 cut(s) 360, 380, 639, 641, 708
FatI CATG 1 cut(s) 706
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 3 cut(s) 265, 588, 645
FriOI GRGCYC 4 cut(s) 33, 476, 554, 595
Fsp4HI GCNGC 1 cut(s) 6
GlaI GCGC 1 cut(s) 375
GluI GCNGC 1 cut(s) 6
GsuI CTGGAG 1 cut(s) 126
HaeIII GGCC 1 cut(s) 333
HapII CCGG 1 cut(s) 26
HhaI GCGC 1 cut(s) 376
Hin1I GRCGYC 1 cut(s) 363
Hin1II CATG 1 cut(s) 710
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HinfI GANTC 7 cut(s) 199, 247, 289, 316, 386, 526, 668
HpaII CCGG 1 cut(s) 26
HphI GGTGA 1 cut(s) 98
Hpy166II GTNNAC 1 cut(s) 650
Hpy188I TCNGA 3 cut(s) 116, 243, 252
Hpy188III TCNNGA 6 cut(s) 223, 229, 259, 518, 530, 662
Hpy8I GTNNAC 1 cut(s) 650
HpyAV CCTTC 2 cut(s) 296, 346
HpyCH4IV ACGT 1 cut(s) 363
HpyCH4V TGCA 2 cut(s) 497, 508
HpyF10VI GCNNNNNNNGC 1 cut(s) 330
HpyF3I CTNAG 2 cut(s) 113, 470
HpySE526I ACGT 1 cut(s) 363
Hsp92I GRCGYC 1 cut(s) 363
Hsp92II CATG 1 cut(s) 710
HspAI GCGC 1 cut(s) 374
Kzo9I GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
LguI GCTCTTC 2 cut(s) 38, 428
LmnI GCTCC 4 cut(s) 28, 44, 583, 590
MaeII ACGT 1 cut(s) 363
MaeIII GTNAC 1 cut(s) 556
MalI GATC 8 cut(s) 158, 227, 240, 263, 307, 351, 698, 729
MbiI CCGCTC 1 cut(s) 39
MboI GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
MfeI CAATTG 1 cut(s) 498
MflI RGATCY 2 cut(s) 305, 349
MhlI GDGCHC 4 cut(s) 33, 476, 554, 595
MluCI AATT 5 cut(s) 234, 355, 391, 456, 498
MlyI GAGTC 2 cut(s) 193, 380
MmeI TCCRAC 1 cut(s) 111
MseI TTAA 2 cut(s) 126, 751
MslI CAYNNNNRTG 2 cut(s) 663, 711
MspI CCGG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 673
MunI CAATTG 1 cut(s) 498
Mva1269I GAATGC 1 cut(s) 508
MvaI CCWGG 1 cut(s) 673
MvnI CGCG 3 cut(s) 224, 341, 374
MwoI GCNNNNNNNGC 1 cut(s) 330
NdeII GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
NlaIII CATG 1 cut(s) 710
NlaIV GGNNCC 3 cut(s) 307, 334, 351
NmuCI GTSAC 1 cut(s) 556
NruI TCGCGA 1 cut(s) 224
PciSI GCTCTTC 2 cut(s) 38, 428
PctI GAATGC 1 cut(s) 508
PfeI GAWTC 5 cut(s) 247, 289, 316, 526, 668
PfoI TCCNGGA 1 cut(s) 671
PkrI GCNGC 1 cut(s) 7
Ple19I CGATCG 1 cut(s) 159
PleI GAGTC 2 cut(s) 193, 380
PpsI GAGTC 2 cut(s) 193, 380
Psp124BI GAGCTC 4 cut(s) 33, 476, 554, 595
Psp6I CCWGG 1 cut(s) 671
PspGI CCWGG 1 cut(s) 671
PspN4I GGNNCC 3 cut(s) 307, 334, 351
PspPI GGNCC 2 cut(s) 256, 332
PsuI RGATCY 2 cut(s) 305, 349
PvuI CGATCG 1 cut(s) 159
RruI TCGCGA 1 cut(s) 224
RsaI GTAC 1 cut(s) 206
RsaNI GTAC 1 cut(s) 205
RseI CAYNNNNRTG 2 cut(s) 663, 711
SacI GAGCTC 4 cut(s) 33, 476, 554, 595
SapI GCTCTTC 2 cut(s) 38, 428
SaqAI TTAA 2 cut(s) 126, 751
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 8 cut(s) 156, 225, 238, 261, 305, 349, 696, 727
Sau96I GGNCC 2 cut(s) 256, 332
SchI GAGTC 2 cut(s) 193, 380
ScrFI CCNGG 1 cut(s) 673
SduI GDGCHC 4 cut(s) 33, 476, 554, 595
SinI GGWCC 1 cut(s) 256
SmiMI CAYNNNNRTG 2 cut(s) 663, 711
SmlI CTYRAG 2 cut(s) 180, 617
SmoI CTYRAG 2 cut(s) 180, 617
Sse9I AATT 5 cut(s) 234, 355, 391, 456, 498
SsiI CCGC 3 cut(s) 5, 37, 341
SstI GAGCTC 4 cut(s) 33, 476, 554, 595
StyD4I CCNGG 1 cut(s) 671
TaiI ACGT 1 cut(s) 366
TaqI TCGA 4 cut(s) 155, 159, 314, 454
TasI AATT 5 cut(s) 234, 355, 391, 456, 498
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 5 cut(s) 247, 289, 316, 526, 668
Tru1I TTAA 2 cut(s) 126, 751
Tru9I TTAA 2 cut(s) 126, 751
TseFI GTSAC 1 cut(s) 556
Tsp45I GTSAC 1 cut(s) 556
TspDTI ATGAA 3 cut(s) 626, 681, 695
TspGWI ACGGA 1 cut(s) 298
VpaK11BI GGWCC 1 cut(s) 256
ZraI GACGTC 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.