Rh2CG534300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001427
Physical Location & Seq
Forward (+)
71060264 .. 71060977
714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG534300.1

Sequence Viewer

Length: 714 bp
ATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGAGTCTCGCGGTCACGAGAATTGATCGGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAATCTGTTTCTAGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCGTTCGCCGCTGTGGATCCCGAATATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTCTAGCGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAACAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTAGGTTGCTGAGCTCAAAGGGTTTTGTGCCGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTGTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCGCCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCACAGAGGCTTACACACAAGGAGCTTTCGGCATTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATAAGTTTCATGCCGGAATTGGTCATCAATGGAGTGAGGATCGTGGCGCCCGACATCTATTCTTCGAACAACTTGGTCGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAGTACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

237

Amino Acids

26.21

Weight (kDa)

9.61

Isoelectric Point (pI)

31.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 131 - 227 1.6e-07 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 584
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 628
AccII CGCG 2 cut(s) 56, 206
AciI CCGC 3 cut(s) 56, 174, 410
AclWI GGATC 5 cut(s) 132, 145, 176, 189, 629
AcyI GRCGYC 2 cut(s) 195, 629
AdeI CACNNNGTG 1 cut(s) 481
AfaI GTAC 2 cut(s) 38, 706
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 2 cut(s) 256, 371
AluBI AGCT 6 cut(s) 312, 390, 424, 431, 508, 680
AluI AGCT 6 cut(s) 312, 390, 424, 431, 508, 680
Alw21I GWGCWC 3 cut(s) 314, 392, 433
Alw26I GTCTC 2 cut(s) 56, 115
AlwI GGATC 5 cut(s) 132, 145, 176, 189, 629
AlwNI CAGNNNCTG 1 cut(s) 565
Ama87I CYCGRG 2 cut(s) 444, 675
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 343
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 2 cut(s) 208, 631
AspS9I GGNCC 2 cut(s) 88, 164
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 566, 700
AsuII TTCGAA 1 cut(s) 647
AvaI CYCGRG 2 cut(s) 444, 675
AvaII GGWCC 1 cut(s) 88
BamHI GGATCC 2 cut(s) 137, 181
BanI GGYRCC 1 cut(s) 628
BanII GRGCYC 3 cut(s) 314, 392, 433
BauI CACGAG 1 cut(s) 61
Bbv12I GWGCWC 3 cut(s) 314, 392, 433
BbvI GCAGC 1 cut(s) 330
BccI CCATC 1 cut(s) 353
BceAI ACGGC 2 cut(s) 169, 313
BcgI CGANNNNNNTGC 4 cut(s) 388, 422, 514, 548
BclI TGATCA 1 cut(s) 556
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 2 cut(s) 56, 115
BfaI CTAG 3 cut(s) 131, 228, 702
BfoI RGCGCY 1 cut(s) 632
BglI GCCNNNNNGGC 1 cut(s) 490
BisI GCNGC 3 cut(s) 174, 344, 410
BlpI GCTNAGC 1 cut(s) 308
BlsI GCNGC 3 cut(s) 175, 345, 411
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 2 cut(s) 444, 675
BmgT120I GGNCC 2 cut(s) 88, 164
BmiI GGNNCC 3 cut(s) 139, 183, 630
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 585
BmuI ACTGGG 1 cut(s) 585
Bpu10I CCTNAGC 1 cut(s) 536
Bpu1102I GCTNAGC 1 cut(s) 308
Bpu14I TTCGAA 1 cut(s) 647
BpuEI CTTGAG 1 cut(s) 476
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 2 cut(s) 195, 629
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 443, 664
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 580
Bse3DI GCAATG 2 cut(s) 283, 515
BseDI CCNNGG 2 cut(s) 443, 664
BseGI GGATG 1 cut(s) 439
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 2 cut(s) 283, 515
BseMII CTCAG 2 cut(s) 299, 550
BseNI ACTGG 1 cut(s) 580
BseXI GCAGC 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 56, 206
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 628
BsiHKAI GWGCWC 3 cut(s) 314, 392, 433
BsiHKCI CYCGRG 2 cut(s) 444, 675
BsiSI CCGG 3 cut(s) 40, 100, 596
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 2 cut(s) 56, 115
BsmI GAATGC 1 cut(s) 346
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 2 cut(s) 444, 675
Bsp119I TTCGAA 1 cut(s) 647
Bsp1286I GDGCHC 3 cut(s) 314, 392, 433
Bsp143I GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
Bsp1720I GCTNAGC 1 cut(s) 308
Bsp19I CCATGG 1 cut(s) 664
BspACI CCGC 3 cut(s) 56, 174, 410
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 2 cut(s) 300, 549
BspFNI CGCG 2 cut(s) 56, 206
BspLI GGNNCC 3 cut(s) 139, 183, 630
BspPI GGATC 5 cut(s) 132, 145, 176, 189, 629
BspQI GCTCTTC 1 cut(s) 266
BspT104I TTCGAA 1 cut(s) 647
BspT107I GGYRCC 1 cut(s) 628
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 2 cut(s) 283, 515
BsrI ACTGG 1 cut(s) 580
BssECI CCNNGG 2 cut(s) 443, 664
BssMI GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
BssNI GRCGYC 2 cut(s) 195, 629
BssSI CACGAG 1 cut(s) 61
BssT1I CCWWGG 1 cut(s) 664
Bst2BI CACGAG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 266
BstACI GRCGYC 2 cut(s) 195, 629
BstAPI GCANNNNNTGC 1 cut(s) 521
BstBI TTCGAA 1 cut(s) 647
BstC8I GCNNGC 2 cut(s) 26, 522
BstDEI CTNAG 2 cut(s) 308, 536
BstDSI CCRYGG 1 cut(s) 664
BstF5I GGATG 1 cut(s) 439
BstFNI CGCG 2 cut(s) 56, 206
BstH2I RGCGCY 1 cut(s) 632
BstHHI GCGC 2 cut(s) 208, 631
BstKTI GATC 7 cut(s) 73, 96, 140, 184, 559, 624, 697
BstMAI GTCTC 2 cut(s) 56, 115
BstMBI GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
BstMWI GCNNNNNNNGC 3 cut(s) 162, 490, 521
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 2 cut(s) 56, 206
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 2 cut(s) 137, 181
BstYI RGATCY 2 cut(s) 137, 181
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 664
BtsCI GGATG 1 cut(s) 439
BtsIMutI CAGTG 1 cut(s) 573
Cac8I GCNNGC 2 cut(s) 26, 522
CaiI CAGNNNCTG 1 cut(s) 565
CfoI GCGC 2 cut(s) 208, 631
Cfr13I GGNCC 2 cut(s) 88, 164
CseI GACGC 1 cut(s) 220
Csp6I GTAC 2 cut(s) 37, 705
CviAII CATG 3 cut(s) 551, 592, 665
CviQI GTAC 2 cut(s) 37, 705
DdeI CTNAG 2 cut(s) 308, 536
DinI GGCGCC 1 cut(s) 630
DpnI GATC 7 cut(s) 72, 95, 139, 183, 558, 623, 696
DpnII GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
DraIII CACNNNGTG 1 cut(s) 481
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Ecl136II GAGCTC 3 cut(s) 312, 390, 431
Eco130I CCWWGG 1 cut(s) 664
Eco24I GRGCYC 3 cut(s) 314, 392, 433
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 3 cut(s) 312, 390, 431
Eco88I CYCGRG 2 cut(s) 444, 675
EcoICRI GAGCTC 3 cut(s) 312, 390, 431
EcoT14I CCWWGG 1 cut(s) 664
EcoT38I GRGCYC 3 cut(s) 314, 392, 433
EgeI GGCGCC 1 cut(s) 630
EheI GGCGCC 1 cut(s) 630
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 3 cut(s) 554, 595, 668
FaiI YATR 6 cut(s) 192, 545, 552, 584, 593, 666
FatI CATG 3 cut(s) 550, 591, 664
FbaI TGATCA 1 cut(s) 556
Fnu4HI GCNGC 3 cut(s) 174, 344, 410
FokI GGATG 1 cut(s) 426
FriOI GRGCYC 3 cut(s) 314, 392, 433
Fsp4HI GCNGC 3 cut(s) 174, 344, 410
FspBI CTAG 3 cut(s) 131, 228, 702
GlaI GCGC 2 cut(s) 207, 630
GluI GCNGC 3 cut(s) 174, 344, 410
HaeII RGCGCY 1 cut(s) 632
HaeIII GGCC 1 cut(s) 165
HapII CCGG 3 cut(s) 40, 100, 596
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 208, 631
Hin1I GRCGYC 2 cut(s) 195, 629
Hin1II CATG 3 cut(s) 554, 595, 668
Hin6I GCGC 2 cut(s) 206, 629
HinP1I GCGC 2 cut(s) 206, 629
HinfI GANTC 7 cut(s) 31, 49, 79, 121, 148, 218, 529
HpaII CCGG 3 cut(s) 40, 100, 596
HphI GGTGA 2 cut(s) 566, 700
Hpy188I TCNGA 3 cut(s) 75, 84, 294
Hpy188III TCNNGA 8 cut(s) 61, 91, 131, 185, 356, 538, 566, 675
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 2 cut(s) 335, 346
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 490, 521
HpyF3I CTNAG 2 cut(s) 308, 536
HpySE526I ACGT 1 cut(s) 195
Hsp92I GRCGYC 2 cut(s) 195, 629
Hsp92II CATG 3 cut(s) 554, 595, 668
HspAI GCGC 2 cut(s) 206, 629
KasI GGCGCC 1 cut(s) 628
Ksp22I TGATCA 1 cut(s) 556
Kzo9I GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 3 cut(s) 421, 428, 505
Lsp1109I GCAGC 1 cut(s) 330
MaeI CTAG 3 cut(s) 131, 228, 702
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 58, 394, 571
MalI GATC 7 cut(s) 72, 95, 139, 183, 558, 623, 696
MboI GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
MboII GAAGA 8 cut(s) 88, 268, 271, 280, 283, 383, 472, 636
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 2 cut(s) 137, 181
MhlI GDGCHC 3 cut(s) 314, 392, 433
MluCI AATT 4 cut(s) 66, 223, 336, 599
Mly113I GGCGCC 1 cut(s) 629
MlyI GAGTC 4 cut(s) 25, 58, 212, 523
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 8 cut(s) 21, 453, 462, 483, 519, 573, 612, 679
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 3 cut(s) 40, 100, 596
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 336
Mva1269I GAATGC 1 cut(s) 346
MvnI CGCG 2 cut(s) 56, 206
MwoI GCNNNNNNNGC 3 cut(s) 162, 490, 521
NarI GGCGCC 1 cut(s) 629
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 664
NdeII GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
NlaIII CATG 3 cut(s) 554, 595, 668
NlaIV GGNNCC 3 cut(s) 139, 183, 630
NmuCI GTSAC 3 cut(s) 58, 394, 571
NspV TTCGAA 1 cut(s) 647
PciSI GCTCTTC 1 cut(s) 266
PcsI WCGNNNNNNNCGW 1 cut(s) 630
PctI GAATGC 1 cut(s) 346
PfeI GAWTC 3 cut(s) 79, 121, 148
PkrI GCNGC 3 cut(s) 175, 345, 411
PleI GAGTC 4 cut(s) 25, 57, 212, 523
PluTI GGCGCC 1 cut(s) 632
PpsI GAGTC 4 cut(s) 25, 57, 212, 523
PsiI TTATAA 1 cut(s) 584
Psp124BI GAGCTC 3 cut(s) 314, 392, 433
PspN4I GGNNCC 3 cut(s) 139, 183, 630
PspPI GGNCC 2 cut(s) 88, 164
PstNI CAGNNNCTG 1 cut(s) 565
PsuI RGATCY 2 cut(s) 137, 181
RsaI GTAC 2 cut(s) 38, 706
RsaNI GTAC 2 cut(s) 37, 705
SacI GAGCTC 3 cut(s) 314, 392, 433
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 174, 344, 410
Sau3AI GATC 7 cut(s) 70, 93, 137, 181, 556, 621, 694
Sau96I GGNCC 2 cut(s) 88, 164
SchI GAGTC 4 cut(s) 25, 58, 212, 523
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 314, 392, 433
SfoI GGCGCC 1 cut(s) 630
SfuI TTCGAA 1 cut(s) 647
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 12, 455
SmoI CTYRAG 2 cut(s) 12, 455
Sse9I AATT 4 cut(s) 66, 223, 336, 599
SsiI CCGC 3 cut(s) 56, 174, 410
SspDI GGCGCC 1 cut(s) 628
SspMI CTAG 3 cut(s) 131, 228, 702
SstI GAGCTC 3 cut(s) 314, 392, 433
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 1 cut(s) 198
TaqI TCGA 3 cut(s) 146, 647, 684
TasI AATT 4 cut(s) 66, 223, 336, 599
TauI GCSGC 2 cut(s) 176, 412
TfiI GAWTC 3 cut(s) 79, 121, 148
TscAI CASTG 1 cut(s) 580
TseFI GTSAC 3 cut(s) 58, 394, 571
TseI GCWGC 1 cut(s) 343
Tsp45I GTSAC 3 cut(s) 58, 394, 571
TspDTI ATGAA 2 cut(s) 539, 580
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 580
VpaK11BI GGWCC 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 3 cut(s) 131, 228, 702
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.