Rroxscaffold_2G00089520

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0001427
Physical Location & Seq
Reverse (-)
11489216 .. 11490301
1086 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089520.1

Sequence Viewer

Length: 1086 bp
ATGGCTTCTTCTTCTTCTTCTTCCTACTGCACCCGCTGGCACGCCATACTCTACTCCACCATGGCCGTCATCCTCGCCGCCATCGCAATCTCCATGACCCTCCGCTCCGACCCCACCGCCCAAACCCCCAAATCCGCCACACCCATCAGCCACGTCATCTCTCTCAGCGCCTCAAGAACTCTCCGCGCCTCCGGCTTCACCGTCACGGCGGCGCTCTTCCAAATATCGCCGGAGCTCTTCCTCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCGACTCCCACATCTCCAACACCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTCAAATACCACACCTCGCCGATTAGGGTTTCGATCGAGGACCTGATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGAGCCTCGCGGTCACGAGGATCGATCGGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAATCTGTTTCTAGAAGGATCCGTTTCGGTTCACGGCGTTCTTGGCCCGTTCGCGGCTGTGGATCCCAAATATGACGTCATTCACGCTCCTGTGTGCGACTCCAATTCTAGTGTCGTTTCTGGTTCTGGTGGATTGAAGGAGAACAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTAGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGCTTATACACAAGGAGCTTTCGTCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTTGAAGTCACTGGGTTTATGAGCTTCATGCCGGAATTGGTCATCAATGGAGTGAGGATCGTGGCGCCCGACATCTATTCTTCGAACAACTTGGTTGTCCATGGGATTTCCCGAGCTTTCGAGGTGAATGATCTGCCTAGTACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

361

Amino Acids

39.57

Weight (kDa)

9.58

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 255 - 351 1e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 570
AccB1I GGYRCC 1 cut(s) 1000
AccBSI CCGCTC 1 cut(s) 105
AccII CGCG 3 cut(s) 186, 428, 545
AciI CCGC 9 cut(s) 34, 78, 103, 117, 135, 184, 209, 428, 545
AclWI GGATC 6 cut(s) 446, 504, 517, 548, 561, 1001
AcoI YGGCCR 1 cut(s) 63
AcyI GRCGYC 2 cut(s) 567, 1001
AdeI CACNNNGTG 1 cut(s) 853
AfaI GTAC 2 cut(s) 410, 1078
AfiI CCNNNNNNNGG 2 cut(s) 478, 544
AgsI TTSAA 3 cut(s) 628, 743, 941
AjiI CACGTC 1 cut(s) 154
AluBI AGCT 8 cut(s) 235, 684, 762, 796, 803, 880, 960, 1052
AluI AGCT 8 cut(s) 235, 684, 762, 796, 803, 880, 960, 1052
Alw21I GWGCWC 4 cut(s) 237, 686, 764, 805
Alw26I GTCTC 2 cut(s) 315, 487
AlwI GGATC 6 cut(s) 446, 504, 517, 548, 561, 1001
Ama87I CYCGRG 2 cut(s) 816, 1047
AoxI GGCC 2 cut(s) 63, 535
ArsI GACNNNNNNTTYG 2 cut(s) 552, 584
AspLEI GCGC 4 cut(s) 170, 188, 214, 1003
AspS9I GGNCC 3 cut(s) 367, 460, 536
AsuC2I CCSGG 1 cut(s) 473
AsuHPI GGTGA 4 cut(s) 190, 302, 938, 1072
AsuII TTCGAA 1 cut(s) 1019
AvaI CYCGRG 2 cut(s) 816, 1047
AvaII GGWCC 2 cut(s) 367, 460
BamHI GGATCC 2 cut(s) 509, 553
BanI GGYRCC 1 cut(s) 1000
BanII GRGCYC 4 cut(s) 237, 686, 764, 805
BauI CACGAG 1 cut(s) 433
Bbv12I GWGCWC 4 cut(s) 237, 686, 764, 805
BccI CCATC 5 cut(s) 89, 152, 269, 367, 725
BceAI ACGGC 4 cut(s) 50, 222, 541, 685
BcgI CGANNNNNNTGC 4 cut(s) 760, 794, 886, 920
BclI TGATCA 1 cut(s) 928
BcnI CCSGG 1 cut(s) 473
BcoDI GTCTC 2 cut(s) 315, 487
BfaI CTAG 3 cut(s) 503, 600, 1074
BfoI RGCGCY 3 cut(s) 171, 215, 1004
BglI GCCNNNNNGGC 1 cut(s) 862
BisI GCNGC 3 cut(s) 78, 210, 546
BlpI GCTNAGC 1 cut(s) 680
BlsI GCNGC 3 cut(s) 79, 211, 547
Bme1390I CCNGG 1 cut(s) 473
Bme18I GGWCC 2 cut(s) 367, 460
BmeT110I CYCGRG 2 cut(s) 816, 1047
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 367, 460, 536
BmiI GGNNCC 3 cut(s) 511, 555, 1002
BmrFI CCNGG 1 cut(s) 473
BmrI ACTGGG 1 cut(s) 957
BmuI ACTGGG 1 cut(s) 957
BplI GAGNNNNNCTC 2 cut(s) 312, 344
Bpu10I CCTNAGC 1 cut(s) 908
Bpu1102I GCTNAGC 1 cut(s) 680
Bpu14I TTCGAA 1 cut(s) 1019
BpuEI CTTGAG 3 cut(s) 157, 369, 848
BpuMI CCSGG 1 cut(s) 473
Bsa29I ATCGAT 1 cut(s) 441
BsaHI GRCGYC 2 cut(s) 567, 1001
BsaI GGTCTC 2 cut(s) 315, 487
BsaJI CCNNGG 3 cut(s) 60, 815, 1036
BsaWI WCCGGW 1 cut(s) 411
BsaXI ACNNNNNCTCC 2 cut(s) 869, 899
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 544
Bse1I ACTGG 1 cut(s) 952
Bse3DI GCAATG 1 cut(s) 655
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 60, 815, 1036
BseGI GGATG 2 cut(s) 69, 811
BseLI CCNNNNNNNGG 2 cut(s) 478, 544
BseMI GCAATG 1 cut(s) 655
BseMII CTCAG 5 cut(s) 178, 331, 671, 872, 922
BseNI ACTGG 1 cut(s) 952
BseRI GAGGAG 4 cut(s) 235, 297, 305, 317
BsgI GTGCAG 1 cut(s) 13
Bsh1236I CGCG 3 cut(s) 186, 428, 545
Bsh1285I CGRYCG 2 cut(s) 363, 445
BshFI GGCC 2 cut(s) 65, 537
BshNI GGYRCC 1 cut(s) 1000
BshVI ATCGAT 1 cut(s) 441
BsiEI CGRYCG 2 cut(s) 363, 445
BsiHKAI GWGCWC 4 cut(s) 237, 686, 764, 805
BsiHKCI CYCGRG 2 cut(s) 816, 1047
BsiSI CCGG 5 cut(s) 192, 230, 412, 472, 968
BslI CCNNNNNNNGG 2 cut(s) 478, 544
BsmAI GTCTC 2 cut(s) 315, 487
BsmI GAATGC 1 cut(s) 718
BsnI GGCC 2 cut(s) 65, 537
Bso31I GGTCTC 2 cut(s) 315, 487
BsoBI CYCGRG 2 cut(s) 816, 1047
Bsp119I TTCGAA 1 cut(s) 1019
Bsp1286I GDGCHC 4 cut(s) 237, 686, 764, 805
Bsp143I GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
Bsp1720I GCTNAGC 1 cut(s) 680
Bsp19I CCATGG 2 cut(s) 60, 1036
BspACI CCGC 9 cut(s) 34, 78, 103, 117, 135, 184, 209, 428, 545
BspANI GGCC 2 cut(s) 65, 537
BspCNI CTCAG 5 cut(s) 177, 330, 672, 871, 921
BspDI ATCGAT 1 cut(s) 441
BspFNI CGCG 3 cut(s) 186, 428, 545
BspLI GGNNCC 3 cut(s) 511, 555, 1002
BspPI GGATC 6 cut(s) 446, 504, 517, 548, 561, 1001
BspQI GCTCTTC 3 cut(s) 221, 242, 638
BspT104I TTCGAA 1 cut(s) 1019
BspT107I GGYRCC 1 cut(s) 1000
BspTNI GGTCTC 2 cut(s) 315, 487
BsrBI CCGCTC 1 cut(s) 105
BsrDI GCAATG 1 cut(s) 655
BsrI ACTGG 1 cut(s) 952
BssECI CCNNGG 3 cut(s) 60, 815, 1036
BssMI GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
BssNI GRCGYC 2 cut(s) 567, 1001
BssSI CACGAG 1 cut(s) 433
BssT1I CCWWGG 2 cut(s) 60, 1036
Bst2BI CACGAG 1 cut(s) 433
Bst4CI ACNGT 2 cut(s) 202, 460
Bst6I CTCTTC 3 cut(s) 221, 242, 638
BstACI GRCGYC 2 cut(s) 567, 1001
BstBI TTCGAA 1 cut(s) 1019
BstC8I GCNNGC 4 cut(s) 38, 42, 398, 894
BstDEI CTNAG 5 cut(s) 164, 317, 680, 858, 908
BstDSI CCRYGG 2 cut(s) 60, 1036
BstF5I GGATG 2 cut(s) 69, 811
BstFNI CGCG 3 cut(s) 186, 428, 545
BstH2I RGCGCY 3 cut(s) 171, 215, 1004
BstHHI GCGC 4 cut(s) 170, 188, 214, 1003
BstKTI GATC 9 cut(s) 363, 441, 445, 468, 512, 556, 931, 996, 1069
BstMAI GTCTC 2 cut(s) 315, 487
BstMBI GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
BstMCI CGRYCG 2 cut(s) 363, 445
BstMWI GCNNNNNNNGC 4 cut(s) 83, 192, 534, 862
BstSCI CCNGG 1 cut(s) 471
BstUI CGCG 3 cut(s) 186, 428, 545
BstX2I RGATCY 2 cut(s) 509, 553
BstYI RGATCY 2 cut(s) 509, 553
Bsu15I ATCGAT 1 cut(s) 441
BsuRI GGCC 2 cut(s) 65, 537
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 2 cut(s) 60, 1036
BtgZI GCGATG 1 cut(s) 67
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 69, 811
BtsIMutI CAGTG 1 cut(s) 945
Cac8I GCNNGC 4 cut(s) 38, 42, 398, 894
CfoI GCGC 4 cut(s) 170, 188, 214, 1003
Cfr13I GGNCC 3 cut(s) 367, 460, 536
ClaI ATCGAT 1 cut(s) 441
Csp6I GTAC 2 cut(s) 409, 1077
CspCI CAANNNNNGTGG 2 cut(s) 771, 806
CviAII CATG 5 cut(s) 61, 94, 923, 964, 1037
CviQI GTAC 2 cut(s) 409, 1077
DdeI CTNAG 5 cut(s) 164, 317, 680, 858, 908
DinI GGCGCC 1 cut(s) 1002
DpnI GATC 9 cut(s) 362, 440, 444, 467, 511, 555, 930, 995, 1068
DpnII GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
DraIII CACNNNGTG 1 cut(s) 853
EaeI YGGCCR 1 cut(s) 63
Eam1104I CTCTTC 3 cut(s) 221, 242, 638
EarI CTCTTC 3 cut(s) 221, 242, 638
EciI GGCGGA 1 cut(s) 124
Ecl136II GAGCTC 4 cut(s) 235, 684, 762, 803
Eco130I CCWWGG 2 cut(s) 60, 1036
Eco24I GRGCYC 4 cut(s) 237, 686, 764, 805
Eco31I GGTCTC 2 cut(s) 315, 487
Eco47I GGWCC 2 cut(s) 367, 460
Eco53kI GAGCTC 4 cut(s) 235, 684, 762, 803
Eco88I CYCGRG 2 cut(s) 816, 1047
EcoICRI GAGCTC 4 cut(s) 235, 684, 762, 803
EcoO109I RGGNCCY 1 cut(s) 367
EcoT14I CCWWGG 2 cut(s) 60, 1036
EcoT38I GRGCYC 4 cut(s) 237, 686, 764, 805
EgeI GGCGCC 1 cut(s) 1002
EheI GGCGCC 1 cut(s) 1002
ErhI CCWWGG 2 cut(s) 60, 1036
FaeI CATG 5 cut(s) 64, 97, 926, 967, 1040
FatI CATG 5 cut(s) 60, 93, 922, 963, 1036
FauI CCCGC 1 cut(s) 41
FbaI TGATCA 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 78, 210, 546
FokI GGATG 2 cut(s) 56, 798
FriOI GRGCYC 4 cut(s) 237, 686, 764, 805
Fsp4HI GCNGC 3 cut(s) 78, 210, 546
FspBI CTAG 3 cut(s) 503, 600, 1074
GlaI GCGC 4 cut(s) 169, 187, 213, 1002
GluI GCNGC 3 cut(s) 78, 210, 546
HaeII RGCGCY 3 cut(s) 171, 215, 1004
HaeIII GGCC 2 cut(s) 65, 537
HapII CCGG 5 cut(s) 192, 230, 412, 472, 968
HhaI GCGC 4 cut(s) 170, 188, 214, 1003
Hin1I GRCGYC 2 cut(s) 567, 1001
Hin1II CATG 5 cut(s) 64, 97, 926, 967, 1040
Hin6I GCGC 4 cut(s) 168, 186, 212, 1001
HinP1I GCGC 4 cut(s) 168, 186, 212, 1001
HinfI GANTC 7 cut(s) 278, 403, 451, 493, 590, 736, 901
HpaII CCGG 5 cut(s) 192, 230, 412, 472, 968
HphI GGTGA 4 cut(s) 190, 302, 938, 1072
Hpy166II GTNNAC 1 cut(s) 523
Hpy188I TCNGA 6 cut(s) 109, 320, 447, 456, 666, 861
Hpy188III TCNNGA 9 cut(s) 174, 433, 463, 503, 728, 740, 910, 938, 1047
Hpy8I GTNNAC 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 500, 622
HpyCH4III ACNGT 2 cut(s) 202, 460
HpyCH4IV ACGT 2 cut(s) 153, 567
HpyCH4V TGCA 3 cut(s) 30, 707, 718
HpyF10VI GCNNNNNNNGC 4 cut(s) 83, 192, 534, 862
HpyF3I CTNAG 5 cut(s) 164, 317, 680, 858, 908
HpySE526I ACGT 2 cut(s) 153, 567
Hsp92I GRCGYC 2 cut(s) 567, 1001
Hsp92II CATG 5 cut(s) 64, 97, 926, 967, 1040
HspAI GCGC 4 cut(s) 168, 186, 212, 1001
KasI GGCGCC 1 cut(s) 1000
Ksp22I TGATCA 1 cut(s) 928
Kzo9I GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
LguI GCTCTTC 3 cut(s) 221, 242, 638
LmnI GCTCC 6 cut(s) 110, 232, 583, 793, 800, 877
MaeI CTAG 3 cut(s) 503, 600, 1074
MaeII ACGT 2 cut(s) 153, 567
MaeIII GTNAC 4 cut(s) 202, 430, 766, 943
MalI GATC 9 cut(s) 362, 440, 444, 467, 511, 555, 930, 995, 1068
MbiI CCGCTC 1 cut(s) 105
MboI GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
MfeI CAATTG 1 cut(s) 708
MflI RGATCY 2 cut(s) 509, 553
MhlI GDGCHC 4 cut(s) 237, 686, 764, 805
MluCI AATT 3 cut(s) 595, 708, 971
Mly113I GGCGCC 1 cut(s) 1001
MlyI GAGTC 4 cut(s) 272, 397, 584, 895
MmeI TCCRAC 3 cut(s) 132, 315, 644
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 5 cut(s) 192, 230, 412, 472, 968
MspR9I CCNGG 1 cut(s) 473
MunI CAATTG 1 cut(s) 708
Mva1269I GAATGC 1 cut(s) 718
MvnI CGCG 3 cut(s) 186, 428, 545
MwoI GCNNNNNNNGC 4 cut(s) 83, 192, 534, 862
NarI GGCGCC 1 cut(s) 1001
NciI CCSGG 1 cut(s) 473
NcoI CCATGG 2 cut(s) 60, 1036
NdeII GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
NlaIII CATG 5 cut(s) 64, 97, 926, 967, 1040
NlaIV GGNNCC 3 cut(s) 511, 555, 1002
NmuCI GTSAC 4 cut(s) 202, 430, 766, 943
NspV TTCGAA 1 cut(s) 1019
PciSI GCTCTTC 3 cut(s) 221, 242, 638
PcsI WCGNNNNNNNCGW 2 cut(s) 273, 1002
PctI GAATGC 1 cut(s) 718
PfeI GAWTC 3 cut(s) 451, 493, 736
PkrI GCNGC 3 cut(s) 79, 211, 547
Ple19I CGATCG 2 cut(s) 363, 445
PleI GAGTC 4 cut(s) 272, 397, 584, 895
PluTI GGCGCC 1 cut(s) 1004
PpsI GAGTC 4 cut(s) 272, 397, 584, 895
PpuMI RGGWCCY 1 cut(s) 367
Psp124BI GAGCTC 4 cut(s) 237, 686, 764, 805
Psp5II RGGWCCY 1 cut(s) 367
PspN4I GGNNCC 3 cut(s) 511, 555, 1002
PspPI GGNCC 3 cut(s) 367, 460, 536
PspPPI RGGWCCY 1 cut(s) 367
PsuI RGATCY 2 cut(s) 509, 553
PvuI CGATCG 2 cut(s) 363, 445
RsaI GTAC 2 cut(s) 410, 1078
RsaNI GTAC 2 cut(s) 409, 1077
SacI GAGCTC 4 cut(s) 237, 686, 764, 805
SapI GCTCTTC 3 cut(s) 221, 242, 638
SatI GCNGC 3 cut(s) 78, 210, 546
Sau3AI GATC 9 cut(s) 360, 438, 442, 465, 509, 553, 928, 993, 1066
Sau96I GGNCC 3 cut(s) 367, 460, 536
SchI GAGTC 4 cut(s) 272, 397, 584, 895
ScrFI CCNGG 1 cut(s) 473
SduI GDGCHC 4 cut(s) 237, 686, 764, 805
SfoI GGCGCC 1 cut(s) 1002
SfuI TTCGAA 1 cut(s) 1019
SinI GGWCC 2 cut(s) 367, 460
SmlI CTYRAG 3 cut(s) 172, 384, 827
SmoI CTYRAG 3 cut(s) 172, 384, 827
Sse9I AATT 3 cut(s) 595, 708, 971
SsiI CCGC 9 cut(s) 34, 78, 103, 117, 135, 184, 209, 428, 545
SspDI GGCGCC 1 cut(s) 1000
SspMI CTAG 3 cut(s) 503, 600, 1074
SstI GAGCTC 4 cut(s) 237, 686, 764, 805
StyD4I CCNGG 1 cut(s) 471
StyI CCWWGG 2 cut(s) 60, 1036
TaaI ACNGT 2 cut(s) 202, 460
TaiI ACGT 2 cut(s) 156, 570
TaqI TCGA 5 cut(s) 359, 363, 441, 1019, 1056
TasI AATT 3 cut(s) 595, 708, 971
TauI GCSGC 3 cut(s) 80, 212, 548
TfiI GAWTC 3 cut(s) 451, 493, 736
TscAI CASTG 1 cut(s) 952
TseFI GTSAC 4 cut(s) 202, 430, 766, 943
Tsp45I GTSAC 4 cut(s) 202, 430, 766, 943
TspDTI ATGAA 2 cut(s) 911, 952
TspGWI ACGGA 1 cut(s) 502
TspRI CASTG 1 cut(s) 952
VpaK11BI GGWCC 2 cut(s) 367, 460
XbaI TCTAGA 1 cut(s) 502
XspI CTAG 3 cut(s) 503, 600, 1074
ZraI GACGTC 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.