Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

32255754 .. 32256416

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAGAAGCCTCAAGGTTCTTACTTGCCAACTCTGTACCGGAAAAAGAGCCTCGTGATCATGAGAATTGATCGGAAGAATCAGACTGTCCAGATCAACTGGATTCACGGCGTTCTTGGCCCCTTCGCGGCTATGGATCCCAATTATGATGTCATTCAGGCGCCTGTGTGCGAGTCCAATTTGAGTGTCGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCCGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCGGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGAGTTTATGAGTTTCATGCCGGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTCGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

194

Amino Acids

21.68

Weight (kDa)

9.07

Isoelectric Point (pI)

29.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	160, 544
AccII	CGCG	1 cut(s)	128
AciI	CCGC	2 cut(s)	128, 293
AclWI	GGATC	3 cut(s)	131, 144, 545
AcyI	GRCGYC	2 cut(s)	161, 545
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	127
AgsI	TTSAA	4 cut(s)	211, 320, 526, 564
AluBI	AGCT	6 cut(s)	261, 339, 373, 380, 424, 574
AluI	AGCT	6 cut(s)	261, 339, 373, 380, 424, 574
Alw21I	GWGCWC	3 cut(s)	263, 341, 382
AlwI	GGATC	3 cut(s)	131, 144, 545
AlwNI	CAGNNNCTG	1 cut(s)	481
Ama87I	CYCGRG	2 cut(s)	393, 569
AoxI	GGCC	3 cut(s)	118, 290, 429
AspLEI	GCGC	2 cut(s)	163, 547
AspS9I	GGNCC	2 cut(s)	119, 290
AsuHPI	GGTGA	2 cut(s)	355, 482
AvaI	CYCGRG	2 cut(s)	393, 569
BamHI	GGATCC	1 cut(s)	136
BanI	GGYRCC	2 cut(s)	160, 544
BanII	GRGCYC	3 cut(s)	263, 341, 382
BauI	CACGAG	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	514
Bbv12I	GWGCWC	3 cut(s)	263, 341, 382
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	2 cut(s)	124, 262
BcgI	CGANNNNNNTGC	2 cut(s)	430, 464
BclI	TGATCA	2 cut(s)	57, 472
BfoI	RGCGCY	2 cut(s)	164, 548
BisI	GCNGC	2 cut(s)	129, 293
BlpI	GCTNAGC	1 cut(s)	257
BlsI	GCNGC	2 cut(s)	130, 294
BmeT110I	CYCGRG	2 cut(s)	393, 569
BmgT120I	GGNCC	2 cut(s)	119, 290
BmiI	GGNNCC	4 cut(s)	121, 138, 162, 546
BpiI	GAAGAC	1 cut(s)	514
Bpu10I	CCTNAGC	1 cut(s)	452
Bpu1102I	GCTNAGC	1 cut(s)	257
BpuEI	CTTGAG	1 cut(s)	425
BsaHI	GRCGYC	2 cut(s)	161, 545
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	39
Bsc4I	CCNNNNNNNGG	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	1 cut(s)	232
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	1 cut(s)	388
BseLI	CCNNNNNNNGG	1 cut(s)	127
BseMI	GCAATG	1 cut(s)	232
BseMII	CTCAG	3 cut(s)	248, 466, 483
BseNI	ACTGG	1 cut(s)	104
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	3 cut(s)	120, 292, 431
BshNI	GGYRCC	2 cut(s)	160, 544
BsiHKAI	GWGCWC	3 cut(s)	263, 341, 382
BsiHKCI	CYCGRG	2 cut(s)	393, 569
BsiSI	CCGG	2 cut(s)	40, 512
BslI	CCNNNNNNNGG	1 cut(s)	127
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	3 cut(s)	120, 292, 431
BsoBI	CYCGRG	2 cut(s)	393, 569
Bsp1286I	GDGCHC	3 cut(s)	263, 341, 382
Bsp143I	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
Bsp1720I	GCTNAGC	1 cut(s)	257
BspACI	CCGC	2 cut(s)	128, 293
BspANI	GGCC	3 cut(s)	120, 292, 431
BspCNI	CTCAG	3 cut(s)	249, 465, 484
BspFNI	CGCG	1 cut(s)	128
BspHI	TCATGA	1 cut(s)	60
BspLI	GGNNCC	4 cut(s)	121, 138, 162, 546
BspPI	GGATC	3 cut(s)	131, 144, 545
BspQI	GCTCTTC	1 cut(s)	215
BspT107I	GGYRCC	2 cut(s)	160, 544
BsrDI	GCAATG	1 cut(s)	232
BsrI	ACTGG	1 cut(s)	104
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
BssNI	GRCGYC	2 cut(s)	161, 545
BssSI	CACGAG	1 cut(s)	53
Bst2BI	CACGAG	1 cut(s)	53
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	215
BstACI	GRCGYC	2 cut(s)	161, 545
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	3 cut(s)	257, 452, 492
BstF5I	GGATG	1 cut(s)	388
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	2 cut(s)	164, 548
BstHHI	GCGC	2 cut(s)	163, 547
BstKTI	GATC	6 cut(s)	60, 73, 96, 139, 475, 540
BstMBI	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
BstMWI	GCNNNNNNNGC	2 cut(s)	117, 437
BstUI	CGCG	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuRI	GGCC	3 cut(s)	120, 292, 431
BtsCI	GGATG	1 cut(s)	388
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	1 cut(s)	438
CaiI	CAGNNNCTG	1 cut(s)	481
CciI	TCATGA	1 cut(s)	60
CfoI	GCGC	2 cut(s)	163, 547
Cfr13I	GGNCC	2 cut(s)	119, 290
Csp6I	GTAC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	3 cut(s)	61, 467, 508
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	257, 452, 492
DinI	GGCGCC	2 cut(s)	162, 546
DpnI	GATC	6 cut(s)	59, 72, 95, 138, 474, 539
DpnII	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
Ecl136II	GAGCTC	3 cut(s)	261, 339, 380
Eco24I	GRGCYC	3 cut(s)	263, 341, 382
Eco53kI	GAGCTC	3 cut(s)	261, 339, 380
Eco88I	CYCGRG	2 cut(s)	393, 569
EcoICRI	GAGCTC	3 cut(s)	261, 339, 380
EcoT38I	GRGCYC	3 cut(s)	263, 341, 382
EgeI	GGCGCC	2 cut(s)	162, 546
EheI	GGCGCC	2 cut(s)	162, 546
FaeI	CATG	3 cut(s)	64, 470, 511
FaiI	YATR	7 cut(s)	62, 134, 147, 461, 468, 500, 509
FatI	CATG	3 cut(s)	60, 466, 507
FbaI	TGATCA	2 cut(s)	57, 472
Fnu4HI	GCNGC	2 cut(s)	129, 293
FokI	GGATG	1 cut(s)	375
FriOI	GRGCYC	3 cut(s)	263, 341, 382
Fsp4HI	GCNGC	2 cut(s)	129, 293
GlaI	GCGC	2 cut(s)	162, 546
GluI	GCNGC	2 cut(s)	129, 293
HaeII	RGCGCY	2 cut(s)	164, 548
HaeIII	GGCC	3 cut(s)	120, 292, 431
HapII	CCGG	2 cut(s)	40, 512
HhaI	GCGC	2 cut(s)	163, 547
Hin1I	GRCGYC	2 cut(s)	161, 545
Hin1II	CATG	3 cut(s)	64, 470, 511
Hin6I	GCGC	2 cut(s)	161, 545
HinP1I	GCGC	2 cut(s)	161, 545
HinfI	GANTC	5 cut(s)	79, 103, 173, 313, 445
HpaII	CCGG	2 cut(s)	40, 512
HphI	GGTGA	2 cut(s)	355, 482
Hpy188I	TCNGA	3 cut(s)	75, 84, 243
Hpy188III	TCNNGA	7 cut(s)	55, 61, 91, 305, 317, 454, 482
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	117, 437
HpyF3I	CTNAG	3 cut(s)	257, 452, 492
Hsp92I	GRCGYC	2 cut(s)	161, 545
Hsp92II	CATG	3 cut(s)	64, 470, 511
HspAI	GCGC	2 cut(s)	161, 545
KasI	GGCGCC	2 cut(s)	160, 544
Ksp22I	TGATCA	2 cut(s)	57, 472
Kzo9I	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
LguI	GCTCTTC	1 cut(s)	215
LmnI	GCTCC	3 cut(s)	370, 377, 421
MaeIII	GTNAC	2 cut(s)	343, 487
MalI	GATC	6 cut(s)	59, 72, 95, 138, 474, 539
MboI	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
MboII	GAAGA	9 cut(s)	88, 223, 226, 229, 232, 332, 421, 514, 552
MfeI	CAATTG	1 cut(s)	285
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	3 cut(s)	263, 341, 382
MluCI	AATT	5 cut(s)	66, 142, 178, 285, 515
Mly113I	GGCGCC	2 cut(s)	161, 545
MlyI	GAGTC	2 cut(s)	182, 439
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	8 cut(s)	21, 62, 402, 411, 435, 489, 528, 573
MspI	CCGG	2 cut(s)	40, 512
MunI	CAATTG	1 cut(s)	285
Mva1269I	GAATGC	1 cut(s)	295
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	117, 437
NarI	GGCGCC	2 cut(s)	161, 545
NdeII	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
NlaIII	CATG	3 cut(s)	64, 470, 511
NlaIV	GGNNCC	4 cut(s)	121, 138, 162, 546
NmuCI	GTSAC	2 cut(s)	343, 487
PagI	TCATGA	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	295
PfeI	GAWTC	3 cut(s)	79, 103, 313
PkrI	GCNGC	2 cut(s)	130, 294
PleI	GAGTC	2 cut(s)	181, 439
PluTI	GGCGCC	2 cut(s)	164, 548
PpsI	GAGTC	2 cut(s)	181, 439
Psp124BI	GAGCTC	3 cut(s)	263, 341, 382
PspN4I	GGNNCC	4 cut(s)	121, 138, 162, 546
PspPI	GGNCC	2 cut(s)	119, 290
PstNI	CAGNNNCTG	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	3 cut(s)	263, 341, 382
SapI	GCTCTTC	1 cut(s)	215
SatI	GCNGC	2 cut(s)	129, 293
Sau3AI	GATC	6 cut(s)	57, 70, 93, 136, 472, 537
Sau96I	GGNCC	2 cut(s)	119, 290
SchI	GAGTC	2 cut(s)	182, 439
SduI	GDGCHC	3 cut(s)	263, 341, 382
SetI	ASST	8 cut(s)	19, 263, 341, 375, 382, 426, 576, 584
SfoI	GGCGCC	2 cut(s)	162, 546
SmlI	CTYRAG	2 cut(s)	12, 404
SmoI	CTYRAG	2 cut(s)	12, 404
Sse9I	AATT	5 cut(s)	66, 142, 178, 285, 515
SsiI	CCGC	2 cut(s)	128, 293
SspDI	GGCGCC	2 cut(s)	160, 544
SstI	GAGCTC	3 cut(s)	263, 341, 382
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	578
TasI	AATT	5 cut(s)	66, 142, 178, 285, 515
TauI	GCSGC	2 cut(s)	131, 295
TfiI	GAWTC	3 cut(s)	79, 103, 313
TscAI	CASTG	1 cut(s)	496
TseFI	GTSAC	2 cut(s)	343, 487
Tsp45I	GTSAC	2 cut(s)	343, 487
TspDTI	ATGAA	2 cut(s)	455, 496
TspRI	CASTG	1 cut(s)	496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.