Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000543.1

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

127198 .. 127860

Gene Structure 663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000543.1_g000032.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

atggagaagcctcaaggttcttgcttgccaactctgtaccggaaaaagagccccgtgatcacgagaattgatcggaagaatcagactgtccagatcaactgggcgcctgtgtgcgagtccaattcgagtgtcgtttctagttctggtggattgaagaagaagaagagcaatgtggaatggggtcggattgtttggttgctgagcttaaaggggtttgtgccatttgcaattgggccgcattctgttcttgatgggattcttgaagatgagagaaatgtgagctctgtgactatttttgtgccaccaagattggagcttggagctcatcatcatcctcgggctttgcttgagaagattgtgaggtatcacattgtgcctcagaggcttacacacagggagctttcggccttgcctgcgaggactctgctcaggactatggttcatggtgatcagcctctggaagtcactgggtttatgagtttcatgccggaattggtcttcaatggagtgaggatcgtggcgcctgacatctattcttcaaaccccgagctttcgaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

186

Amino Acids

20.89

Weight (kDa)

9.82

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	103, 520
AciI	CCGC	1 cut(s)	236
AclWI	GGATC	1 cut(s)	521
AcyI	GRCGYC	2 cut(s)	104, 521
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	1 cut(s)	38
AgsI	TTSAA	4 cut(s)	154, 263, 502, 540
AluBI	AGCT	6 cut(s)	204, 282, 316, 323, 400, 550
AluI	AGCT	6 cut(s)	204, 282, 316, 323, 400, 550
Alw21I	GWGCWC	2 cut(s)	284, 325
AlwI	GGATC	1 cut(s)	521
AlwNI	CAGNNNCTG	1 cut(s)	457
Ama87I	CYCGRG	2 cut(s)	336, 545
AoxI	GGCC	2 cut(s)	233, 405
AspLEI	GCGC	2 cut(s)	106, 523
AspS9I	GGNCC	1 cut(s)	233
AsuHPI	GGTGA	1 cut(s)	458
AvaI	CYCGRG	2 cut(s)	336, 545
BanI	GGYRCC	2 cut(s)	103, 520
BanII	GRGCYC	3 cut(s)	53, 284, 325
BauI	CACGAG	1 cut(s)	61
BbsI	GAAGAC	1 cut(s)	490
Bbv12I	GWGCWC	2 cut(s)	284, 325
BccI	CCATC	1 cut(s)	245
BcgI	CGANNNNNNTGC	2 cut(s)	406, 440
BclI	TGATCA	2 cut(s)	57, 448
BfaI	CTAG	1 cut(s)	138
BfoI	RGCGCY	2 cut(s)	107, 524
BglI	GCCNNNNNGGC	1 cut(s)	382
BisI	GCNGC	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	1 cut(s)	237
BmeT110I	CYCGRG	2 cut(s)	336, 545
BmgT120I	GGNCC	1 cut(s)	233
BmiI	GGNNCC	2 cut(s)	105, 522
BmrI	ACTGGG	2 cut(s)	109, 477
BmuI	ACTGGG	2 cut(s)	109, 477
BpiI	GAAGAC	1 cut(s)	490
Bpu10I	CCTNAGC	1 cut(s)	428
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	368
BsaHI	GRCGYC	2 cut(s)	104, 521
BsaJI	CCNNGG	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	39
Bse1I	ACTGG	2 cut(s)	104, 472
Bse3DI	GCAATG	1 cut(s)	175
BseDI	CCNNGG	1 cut(s)	335
BseGI	GGATG	1 cut(s)	331
BseMI	GCAATG	1 cut(s)	175
BseMII	CTCAG	3 cut(s)	191, 392, 442
BseNI	ACTGG	2 cut(s)	104, 472
BshFI	GGCC	2 cut(s)	235, 407
BshNI	GGYRCC	2 cut(s)	103, 520
BsiHKAI	GWGCWC	2 cut(s)	284, 325
BsiHKCI	CYCGRG	2 cut(s)	336, 545
BsiSI	CCGG	2 cut(s)	40, 488
BsmI	GAATGC	1 cut(s)	238
BsnI	GGCC	2 cut(s)	235, 407
BsoBI	CYCGRG	2 cut(s)	336, 545
Bsp1286I	GDGCHC	3 cut(s)	53, 284, 325
Bsp143I	GATC	5 cut(s)	57, 70, 93, 448, 513
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	1 cut(s)	236
BspANI	GGCC	2 cut(s)	235, 407
BspCNI	CTCAG	3 cut(s)	192, 391, 441
BspLI	GGNNCC	2 cut(s)	105, 522
BspPI	GGATC	1 cut(s)	521
BspQI	GCTCTTC	1 cut(s)	158
BspT107I	GGYRCC	2 cut(s)	103, 520
BsrDI	GCAATG	1 cut(s)	175
BsrI	ACTGG	2 cut(s)	104, 472
BssECI	CCNNGG	1 cut(s)	335
BssMI	GATC	5 cut(s)	57, 70, 93, 448, 513
BssNI	GRCGYC	2 cut(s)	104, 521
BssSI	CACGAG	1 cut(s)	61
Bst2BI	CACGAG	1 cut(s)	61
Bst4CI	ACNGT	1 cut(s)	88
Bst6I	CTCTTC	1 cut(s)	158
BstACI	GRCGYC	2 cut(s)	104, 521
BstC8I	GCNNGC	2 cut(s)	26, 414
BstDEI	CTNAG	3 cut(s)	200, 378, 428
BstF5I	GGATG	1 cut(s)	331
BstH2I	RGCGCY	2 cut(s)	107, 524
BstHHI	GCGC	2 cut(s)	106, 523
BstKTI	GATC	5 cut(s)	60, 73, 96, 451, 516
BstMBI	GATC	5 cut(s)	57, 70, 93, 448, 513
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 413
BstV2I	GAAGAC	1 cut(s)	490
BsuRI	GGCC	2 cut(s)	235, 407
BtsCI	GGATG	1 cut(s)	331
BtsIMutI	CAGTG	1 cut(s)	465
Cac8I	GCNNGC	2 cut(s)	26, 414
CaiI	CAGNNNCTG	1 cut(s)	457
CfoI	GCGC	2 cut(s)	106, 523
Cfr13I	GGNCC	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	37
CspCI	CAANNNNNGTGG	2 cut(s)	291, 326
CviAII	CATG	2 cut(s)	443, 484
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	3 cut(s)	200, 378, 428
DinI	GGCGCC	2 cut(s)	105, 522
DpnI	GATC	5 cut(s)	59, 72, 95, 450, 515
DpnII	GATC	5 cut(s)	57, 70, 93, 448, 513
DraIII	CACNNNGTG	1 cut(s)	373
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Ecl136II	GAGCTC	2 cut(s)	282, 323
Eco24I	GRGCYC	3 cut(s)	53, 284, 325
Eco53kI	GAGCTC	2 cut(s)	282, 323
Eco88I	CYCGRG	2 cut(s)	336, 545
EcoICRI	GAGCTC	2 cut(s)	282, 323
EcoT38I	GRGCYC	3 cut(s)	53, 284, 325
EgeI	GGCGCC	2 cut(s)	105, 522
EheI	GGCGCC	2 cut(s)	105, 522
FaeI	CATG	2 cut(s)	446, 487
FaiI	YATR	4 cut(s)	437, 444, 476, 485
FatI	CATG	2 cut(s)	442, 483
FbaI	TGATCA	2 cut(s)	57, 448
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	1 cut(s)	318
FriOI	GRGCYC	3 cut(s)	53, 284, 325
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	1 cut(s)	138
GlaI	GCGC	2 cut(s)	105, 522
GluI	GCNGC	1 cut(s)	236
HaeII	RGCGCY	2 cut(s)	107, 524
HaeIII	GGCC	2 cut(s)	235, 407
HapII	CCGG	2 cut(s)	40, 488
HhaI	GCGC	2 cut(s)	106, 523
Hin1I	GRCGYC	2 cut(s)	104, 521
Hin1II	CATG	2 cut(s)	446, 487
Hin6I	GCGC	2 cut(s)	104, 521
HinP1I	GCGC	2 cut(s)	104, 521
HinfI	GANTC	4 cut(s)	79, 116, 256, 421
HpaII	CCGG	2 cut(s)	40, 488
HphI	GGTGA	1 cut(s)	458
Hpy188I	TCNGA	4 cut(s)	75, 84, 186, 381
Hpy188III	TCNNGA	6 cut(s)	61, 91, 248, 260, 430, 458
HpyCH4III	ACNGT	1 cut(s)	88
HpyCH4V	TGCA	1 cut(s)	227
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 413
HpyF3I	CTNAG	3 cut(s)	200, 378, 428
Hsp92I	GRCGYC	2 cut(s)	104, 521
Hsp92II	CATG	2 cut(s)	446, 487
HspAI	GCGC	2 cut(s)	104, 521
KasI	GGCGCC	2 cut(s)	103, 520
Ksp22I	TGATCA	2 cut(s)	57, 448
Kzo9I	GATC	5 cut(s)	57, 70, 93, 448, 513
LguI	GCTCTTC	1 cut(s)	158
LmnI	GCTCC	3 cut(s)	313, 320, 397
MaeI	CTAG	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	286, 463
MalI	GATC	5 cut(s)	59, 72, 95, 450, 515
MboI	GATC	5 cut(s)	57, 70, 93, 448, 513
MboII	GAAGA	9 cut(s)	88, 166, 169, 172, 175, 275, 364, 490, 528
MfeI	CAATTG	1 cut(s)	228
MhlI	GDGCHC	3 cut(s)	53, 284, 325
MluCI	AATT	4 cut(s)	66, 121, 228, 491
Mly113I	GGCGCC	2 cut(s)	104, 521
MlyI	GAGTC	2 cut(s)	125, 415
MmeI	TCCRAC	1 cut(s)	164
MnlI	CCTC	9 cut(s)	21, 345, 354, 375, 387, 411, 465, 504, 549
MseI	TTAA	1 cut(s)	206
MspI	CCGG	2 cut(s)	40, 488
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	238
MwoI	GCNNNNNNNGC	2 cut(s)	382, 413
NarI	GGCGCC	2 cut(s)	104, 521
NdeII	GATC	5 cut(s)	57, 70, 93, 448, 513
NlaIII	CATG	2 cut(s)	446, 487
NlaIV	GGNNCC	2 cut(s)	105, 522
NmuCI	GTSAC	2 cut(s)	286, 463
PciSI	GCTCTTC	1 cut(s)	158
PctI	GAATGC	1 cut(s)	238
PfeI	GAWTC	2 cut(s)	79, 256
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	124, 415
PluTI	GGCGCC	2 cut(s)	107, 524
PpsI	GAGTC	2 cut(s)	124, 415
Psp124BI	GAGCTC	2 cut(s)	284, 325
PspN4I	GGNNCC	2 cut(s)	105, 522
PspPI	GGNCC	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	457
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
SacI	GAGCTC	2 cut(s)	284, 325
SapI	GCTCTTC	1 cut(s)	158
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	5 cut(s)	57, 70, 93, 448, 513
Sau96I	GGNCC	1 cut(s)	233
SchI	GAGTC	2 cut(s)	125, 415
SduI	GDGCHC	3 cut(s)	53, 284, 325
SetI	ASST	9 cut(s)	19, 206, 284, 318, 325, 365, 402, 552, 560
SfoI	GGCGCC	2 cut(s)	105, 522
SmlI	CTYRAG	2 cut(s)	12, 347
SmoI	CTYRAG	2 cut(s)	12, 347
Sse9I	AATT	4 cut(s)	66, 121, 228, 491
SsiI	CCGC	1 cut(s)	236
SspDI	GGCGCC	2 cut(s)	103, 520
SspMI	CTAG	1 cut(s)	138
SstI	GAGCTC	2 cut(s)	284, 325
TaaI	ACNGT	1 cut(s)	88
TaqI	TCGA	2 cut(s)	125, 554
TasI	AATT	4 cut(s)	66, 121, 228, 491
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	2 cut(s)	79, 256
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	1 cut(s)	472
TseFI	GTSAC	2 cut(s)	286, 463
Tsp45I	GTSAC	2 cut(s)	286, 463
TspDTI	ATGAA	2 cut(s)	431, 472
TspRI	CASTG	1 cut(s)	472
XspI	CTAG	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.