Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Reverse (-)

32100087 .. 32104229

Gene Structure 4143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG161300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGATCCCAATTATGATGTCATTCAGGCGCCTGTGTGCGAGTCCAATTCGAGTGTCGTTTCTAGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGGGGTTGGATTGTTTGGTTGCTGAGCTTAAAGGGGTTTGTGCCATTTGCAATTGGGCCGCATTCTGTTCTTGATGAGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCCTTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCTTCAATGGAGTGAGGATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTCGAGGGAAAAGCGTAAGCTCGCCGGTAGAAAGGTACATGGTGATATGCATATTCTAGACATTGCTGTGGATTTGCCTTCTGTGACTGAAATTTTCGGGTCAAAATATTTAACTACTCTTCTCTGCACTCGATTAAGATGTCAGATCAACAGACCGGCCTCCGATCACTTTATCTATTCTCTGTTGGTTTTTCTTGCTTGGTCTACTTGGGTGTATAGCTCAGTTGATTGGTTATATTCAGAATGGAAAAAATTGATCGGAGAAGCTGCATCGAATTGGGTCATTGGAGGAATGCTCCTTGGGTTTTATTGTGTGGTGGCTGCAGCATTTCTTATCGTACAGGCATCGGTATTAAAAAAATACCTAGTAGAGCTCATTATAGTCTTTTACTATTGCTTCTTTGTGGCTATTCAATCTGTAGTGGTGTTGTGGTTTGTGGAAAGAGACTCAAGTGCTTGGGCCTTAAACCCTAAGTTAAGTTTGTTTGCGGTTTTATACTCAGTAAGTAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

329

Amino Acids

37.24

Weight (kDa)

8.51

Isoelectric Point (pI)

36.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	28, 445
AccI	GTMKAC	1 cut(s)	680
AciI	CCGC	2 cut(s)	161, 965
AclWI	GGATC	2 cut(s)	12, 446
AcsI	RAATTY	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	29, 446
AdeI	CACNNNGTG	1 cut(s)	298
AfaI	GTAC	2 cut(s)	513, 816
AgsI	TTSAA	5 cut(s)	79, 188, 427, 465, 890
Alw21I	GWGCWC	3 cut(s)	209, 250, 852
Alw26I	GTCTC	1 cut(s)	915
AlwI	GGATC	2 cut(s)	12, 446
AlwNI	CAGNNNCTG	1 cut(s)	382
Ama87I	CYCGRG	2 cut(s)	261, 470
AoxI	GGCC	4 cut(s)	158, 330, 633, 936
ApeKI	GCWGC	3 cut(s)	743, 797, 800
ApoI	RAATTY	1 cut(s)	567
AspLEI	GCGC	2 cut(s)	31, 448
AspS9I	GGNCC	2 cut(s)	158, 936
AsuHPI	GGTGA	2 cut(s)	383, 530
AvaI	CYCGRG	2 cut(s)	261, 470
BamHI	GGATCC	1 cut(s)	4
BanI	GGYRCC	2 cut(s)	28, 445
BanII	GRGCYC	3 cut(s)	209, 250, 852
BbsI	GAAGAC	1 cut(s)	415
Bbv12I	GWGCWC	3 cut(s)	209, 250, 852
BbvI	GCAGC	3 cut(s)	730, 784, 812
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BclI	TGATCA	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	915
BfaI	CTAG	3 cut(s)	63, 533, 842
BfmI	CTRYAG	2 cut(s)	798, 894
BfoI	RGCGCY	2 cut(s)	32, 449
BglI	GCCNNNNNGGC	1 cut(s)	307
BisI	GCNGC	4 cut(s)	161, 744, 798, 801
BlpI	GCTNAGC	1 cut(s)	125
BlsI	GCNGC	4 cut(s)	162, 745, 799, 802
BmeT110I	CYCGRG	2 cut(s)	261, 470
BmgT120I	GGNCC	2 cut(s)	158, 936
BmiI	GGNNCC	3 cut(s)	6, 30, 447
BmrI	ACTGGG	1 cut(s)	402
BmsI	GCATC	2 cut(s)	755, 830
BmuI	ACTGGG	1 cut(s)	402
BpiI	GAAGAC	1 cut(s)	415
BplI	GAGNNNNNCTC	2 cut(s)	756, 788
Bpu10I	CCTNAGC	1 cut(s)	353
Bpu1102I	GCTNAGC	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	293, 910
BsaHI	GRCGYC	2 cut(s)	29, 446
BsaJI	CCNNGG	2 cut(s)	260, 775
Bse118I	RCCGGY	2 cut(s)	500, 631
Bse1I	ACTGG	1 cut(s)	397
Bse3DI	GCAATG	2 cut(s)	100, 537
BseDI	CCNNGG	2 cut(s)	260, 775
BseGI	GGATG	1 cut(s)	256
BseMI	GCAATG	2 cut(s)	100, 537
BseMII	CTCAG	5 cut(s)	116, 317, 367, 711, 990
BseNI	ACTGG	1 cut(s)	397
BseXI	GCAGC	3 cut(s)	730, 784, 812
BsgI	GTGCAG	1 cut(s)	586
BshFI	GGCC	4 cut(s)	160, 332, 635, 938
BshNI	GGYRCC	2 cut(s)	28, 445
BsiHKAI	GWGCWC	3 cut(s)	209, 250, 852
BsiHKCI	CYCGRG	2 cut(s)	261, 470
BsiSI	CCGG	3 cut(s)	413, 501, 632
BsmAI	GTCTC	1 cut(s)	915
BsmI	GAATGC	2 cut(s)	163, 774
BsnI	GGCC	4 cut(s)	160, 332, 635, 938
BsoBI	CYCGRG	2 cut(s)	261, 470
Bsp1286I	GDGCHC	3 cut(s)	209, 250, 852
Bsp143I	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
Bsp1720I	GCTNAGC	1 cut(s)	125
BspACI	CCGC	2 cut(s)	161, 965
BspANI	GGCC	4 cut(s)	160, 332, 635, 938
BspCNI	CTCAG	5 cut(s)	117, 316, 366, 710, 989
BspLI	GGNNCC	3 cut(s)	6, 30, 447
BspMAI	CTGCAG	1 cut(s)	802
BspPI	GGATC	2 cut(s)	12, 446
BspQI	GCTCTTC	1 cut(s)	83
BspT107I	GGYRCC	2 cut(s)	28, 445
BsrDI	GCAATG	2 cut(s)	100, 537
BsrFI	RCCGGY	2 cut(s)	500, 631
BsrI	ACTGG	1 cut(s)	397
BssAI	RCCGGY	2 cut(s)	500, 631
BssECI	CCNNGG	2 cut(s)	260, 775
BssMI	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
BssNI	GRCGYC	2 cut(s)	29, 446
BssT1I	CCWWGG	1 cut(s)	775
Bst6I	CTCTTC	2 cut(s)	83, 600
BstACI	GRCGYC	2 cut(s)	29, 446
BstC8I	GCNNGC	2 cut(s)	339, 498
BstDEI	CTNAG	6 cut(s)	125, 303, 353, 697, 948, 976
BstF5I	GGATG	1 cut(s)	256
BstH2I	RGCGCY	2 cut(s)	32, 449
BstHHI	GCGC	2 cut(s)	31, 448
BstKTI	GATC	6 cut(s)	7, 376, 441, 624, 643, 735
BstMAI	GTCTC	1 cut(s)	915
BstMBI	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
BstMWI	GCNNNNNNNGC	2 cut(s)	307, 338
BstSFI	CTRYAG	2 cut(s)	798, 894
BstV1I	GCAGC	3 cut(s)	730, 784, 812
BstV2I	GAAGAC	1 cut(s)	415
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	4 cut(s)	160, 332, 635, 938
BtsCI	GGATG	1 cut(s)	256
BtsIMutI	CAGTG	1 cut(s)	390
Cac8I	GCNNGC	2 cut(s)	339, 498
CaiI	CAGNNNCTG	1 cut(s)	382
CfoI	GCGC	2 cut(s)	31, 448
Cfr10I	RCCGGY	2 cut(s)	500, 631
Cfr13I	GGNCC	2 cut(s)	158, 936
Csp6I	GTAC	2 cut(s)	512, 815
CspCI	CAANNNNNGTGG	2 cut(s)	216, 251
CviAII	CATG	3 cut(s)	368, 409, 515
CviQI	GTAC	2 cut(s)	512, 815
DdeI	CTNAG	6 cut(s)	125, 303, 353, 697, 948, 976
DinI	GGCGCC	2 cut(s)	30, 447
DpnI	GATC	6 cut(s)	6, 375, 440, 623, 642, 734
DpnII	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
DraIII	CACNNNGTG	1 cut(s)	298
Eam1104I	CTCTTC	2 cut(s)	83, 600
EarI	CTCTTC	2 cut(s)	83, 600
Ecl136II	GAGCTC	3 cut(s)	207, 248, 850
Eco130I	CCWWGG	1 cut(s)	775
Eco24I	GRGCYC	3 cut(s)	209, 250, 852
Eco53kI	GAGCTC	3 cut(s)	207, 248, 850
Eco88I	CYCGRG	2 cut(s)	261, 470
EcoICRI	GAGCTC	3 cut(s)	207, 248, 850
EcoT14I	CCWWGG	1 cut(s)	775
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	3 cut(s)	209, 250, 852
EgeI	GGCGCC	2 cut(s)	30, 447
EheI	GGCGCC	2 cut(s)	30, 447
ErhI	CCWWGG	1 cut(s)	775
FaeI	CATG	3 cut(s)	371, 412, 518
FatI	CATG	3 cut(s)	367, 408, 514
FbaI	TGATCA	1 cut(s)	373
FblI	GTMKAC	1 cut(s)	680
Fnu4HI	GCNGC	4 cut(s)	161, 744, 798, 801
FokI	GGATG	1 cut(s)	243
FriOI	GRGCYC	3 cut(s)	209, 250, 852
Fsp4HI	GCNGC	4 cut(s)	161, 744, 798, 801
FspBI	CTAG	3 cut(s)	63, 533, 842
GlaI	GCGC	2 cut(s)	30, 447
GluI	GCNGC	4 cut(s)	161, 744, 798, 801
HaeII	RGCGCY	2 cut(s)	32, 449
HaeIII	GGCC	4 cut(s)	160, 332, 635, 938
HapII	CCGG	3 cut(s)	413, 501, 632
HhaI	GCGC	2 cut(s)	31, 448
Hin1I	GRCGYC	2 cut(s)	29, 446
Hin1II	CATG	3 cut(s)	371, 412, 518
Hin6I	GCGC	2 cut(s)	29, 446
HinP1I	GCGC	2 cut(s)	29, 446
HinfI	GANTC	4 cut(s)	41, 181, 346, 923
HpaII	CCGG	3 cut(s)	413, 501, 632
HphI	GGTGA	2 cut(s)	383, 530
Hpy166II	GTNNAC	1 cut(s)	681
Hpy188I	TCNGA	5 cut(s)	306, 621, 640, 718, 737
Hpy188III	TCNNGA	5 cut(s)	173, 185, 355, 383, 533
Hpy8I	GTNNAC	1 cut(s)	681
HpyAV	CCTTC	1 cut(s)	564
HpyCH4V	TGCA	5 cut(s)	152, 526, 603, 746, 800
HpyF10VI	GCNNNNNNNGC	2 cut(s)	307, 338
HpyF3I	CTNAG	6 cut(s)	125, 303, 353, 697, 948, 976
Hsp92I	GRCGYC	2 cut(s)	29, 446
Hsp92II	CATG	3 cut(s)	371, 412, 518
HspAI	GCGC	2 cut(s)	29, 446
KasI	GGCGCC	2 cut(s)	28, 445
Ksp22I	TGATCA	1 cut(s)	373
Kzo9I	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	4 cut(s)	238, 245, 322, 777
Lsp1109I	GCAGC	3 cut(s)	730, 784, 812
LweI	GCATC	2 cut(s)	755, 830
MaeI	CTAG	3 cut(s)	63, 533, 842
MaeIII	GTNAC	3 cut(s)	211, 388, 559
MalI	GATC	6 cut(s)	6, 375, 440, 623, 642, 734
MboI	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
MboII	GAAGA	9 cut(s)	91, 94, 97, 100, 200, 289, 415, 453, 587
MfeI	CAATTG	1 cut(s)	153
MflI	RGATCY	1 cut(s)	4
MhlI	GDGCHC	3 cut(s)	209, 250, 852
MluCI	AATT	7 cut(s)	10, 46, 153, 416, 567, 728, 751
Mly113I	GGCGCC	2 cut(s)	29, 446
MlyI	GAGTC	3 cut(s)	50, 340, 917
MmeI	TCCRAC	1 cut(s)	89
Mph1103I	ATGCAT	1 cut(s)	528
MseI	TTAA	6 cut(s)	131, 587, 611, 830, 941, 953
MslI	CAYNNNNRTG	1 cut(s)	542
MspI	CCGG	3 cut(s)	413, 501, 632
MunI	CAATTG	1 cut(s)	153
Mva1269I	GAATGC	2 cut(s)	163, 774
MwoI	GCNNNNNNNGC	2 cut(s)	307, 338
NarI	GGCGCC	2 cut(s)	29, 446
NdeII	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
NlaIII	CATG	3 cut(s)	371, 412, 518
NlaIV	GGNNCC	3 cut(s)	6, 30, 447
NmuCI	GTSAC	3 cut(s)	211, 388, 559
NsiI	ATGCAT	1 cut(s)	528
PciSI	GCTCTTC	1 cut(s)	83
PctI	GAATGC	2 cut(s)	163, 774
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	4 cut(s)	162, 745, 799, 802
PleI	GAGTC	3 cut(s)	49, 340, 917
PluTI	GGCGCC	2 cut(s)	32, 449
PpsI	GAGTC	3 cut(s)	49, 340, 917
Psp124BI	GAGCTC	3 cut(s)	209, 250, 852
PspN4I	GGNNCC	3 cut(s)	6, 30, 447
PspPI	GGNCC	2 cut(s)	158, 936
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	2 cut(s)	513, 816
RsaNI	GTAC	2 cut(s)	512, 815
RseI	CAYNNNNRTG	1 cut(s)	542
SacI	GAGCTC	3 cut(s)	209, 250, 852
SapI	GCTCTTC	1 cut(s)	83
SaqAI	TTAA	6 cut(s)	131, 587, 611, 830, 941, 953
SatI	GCNGC	4 cut(s)	161, 744, 798, 801
Sau3AI	GATC	6 cut(s)	4, 373, 438, 621, 640, 732
Sau96I	GGNCC	2 cut(s)	158, 936
SchI	GAGTC	3 cut(s)	50, 340, 917
SduI	GDGCHC	3 cut(s)	209, 250, 852
SfaNI	GCATC	2 cut(s)	755, 830
SfcI	CTRYAG	2 cut(s)	798, 894
SfoI	GGCGCC	2 cut(s)	30, 447
SmiMI	CAYNNNNRTG	1 cut(s)	542
SmlI	CTYRAG	2 cut(s)	272, 925
SmoI	CTYRAG	2 cut(s)	272, 925
Sse9I	AATT	7 cut(s)	10, 46, 153, 416, 567, 728, 751
SsiI	CCGC	2 cut(s)	161, 965
SspDI	GGCGCC	2 cut(s)	28, 445
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	3 cut(s)	63, 533, 842
SstI	GAGCTC	3 cut(s)	209, 250, 852
StyI	CCWWGG	1 cut(s)	775
TaqI	TCGA	4 cut(s)	50, 479, 607, 749
TasI	AATT	7 cut(s)	10, 46, 153, 416, 567, 728, 751
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	6 cut(s)	131, 587, 611, 830, 941, 953
Tru9I	TTAA	6 cut(s)	131, 587, 611, 830, 941, 953
TscAI	CASTG	1 cut(s)	397
TseFI	GTSAC	3 cut(s)	211, 388, 559
TseI	GCWGC	3 cut(s)	743, 797, 800
Tsp45I	GTSAC	3 cut(s)	211, 388, 559
TspDTI	ATGAA	2 cut(s)	356, 397
TspRI	CASTG	1 cut(s)	397
XapI	RAATTY	1 cut(s)	567
XbaI	TCTAGA	1 cut(s)	532
XmiI	GTMKAC	1 cut(s)	680
XspI	CTAG	3 cut(s)	63, 533, 842
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.