Rh6BG160300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001427
Physical Location & Seq
Reverse (-)
26007002 .. 26008776
1775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG160300.1

Sequence Viewer

Length: 897 bp
ATGGCCGTCATCCTCGCCGCCATCGTAATCTCTATGACCCTCCGCTCCGACCCCACTACCCAAACCCCCAAATCTGCCACACCTATCAGCCACGTCATCTCTCTCAGCGCCTCAAGAACTCTCCGGGCCTCTGGCTTCACCGTCATGGCGGCACTCCTCCAAATCTCGCCGGAGCTCTTCCGCTCCTCGCCGAACTCCACCATCTTCGCAATCGCCAACTCCCACATCTCCAACGCCTCTCTCCCTCCTCACCTCCTCAGAGACCTCCTTAAATACCGCACCTCTCCAGTTAGGGTTTCGATCGAAGACCTGATGGAAAAGCCTCAAGGTTCTTGCTTGCTGACTCTGTACCAGAAAAAGAGCCTCGCGATCACGAGAATTGATCGGAAGAATCGGATGGTCCAGATCAACTGGGTTTGGGTCTCGCACCCGAATCTGTTTGTGGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCCTTCGCGGTTGTGGATCCCAATTATGACGTCATTCACGCGCCTATGTGCGACTCCAATTTGAGTGTTGTTTCTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATGTGGAATGTGGTCGAATTGTTCGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGTTGCATTCTGTTCTTGATGGGATTCTTGAAGATAAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCACCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTAGAGAGCTTCATATATCAGGTTCACTACATCATCCAGATGAATCCAGGAAAACCTACCAAACAAACAAGATCAGTTTTCATGGCAATGCCCTTTTTATTGATCTAAATACCTGTGCTGAAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

298

Amino Acids

32.7

Weight (kDa)

9.54

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 510
AccBSI CCGCTC 2 cut(s) 45, 183
AccII CGCG 3 cut(s) 368, 485, 518
AciI CCGC 6 cut(s) 18, 43, 149, 181, 277, 485
AclWI GGATC 4 cut(s) 444, 457, 488, 501
AcoI YGGCCR 1 cut(s) 3
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 484
AgsI TTSAA 2 cut(s) 568, 677
AjiI CACGTC 1 cut(s) 94
AjnI CCWGG 1 cut(s) 815
AluBI AGCT 6 cut(s) 175, 618, 696, 730, 737, 778
AluI AGCT 6 cut(s) 175, 618, 696, 730, 737, 778
Alw21I GWGCWC 4 cut(s) 177, 620, 698, 739
Alw26I GTCTC 2 cut(s) 255, 427
AlwI GGATC 4 cut(s) 444, 457, 488, 501
Ama87I CYCGRG 1 cut(s) 750
AoxI GGCC 3 cut(s) 3, 126, 475
AspLEI GCGC 2 cut(s) 110, 520
AspS9I GGNCC 3 cut(s) 126, 400, 476
AsuC2I CCSGG 1 cut(s) 125
AsuHPI GGTGA 2 cut(s) 130, 242
AvaI CYCGRG 1 cut(s) 750
AvaII GGWCC 1 cut(s) 400
BamHI GGATCC 2 cut(s) 449, 493
BanII GRGCYC 4 cut(s) 177, 620, 698, 739
BauI CACGAG 1 cut(s) 373
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 4 cut(s) 177, 620, 698, 739
BccI CCATC 5 cut(s) 29, 209, 307, 391, 659
BceAI ACGGC 2 cut(s) 481, 619
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 1 cut(s) 817
BcnI CCSGG 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 255, 427
BfoI RGCGCY 1 cut(s) 111
BisI GCNGC 2 cut(s) 18, 150
BlpI GCTNAGC 1 cut(s) 614
BlsI GCNGC 2 cut(s) 19, 151
Bme1390I CCNGG 2 cut(s) 125, 817
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 750
BmgBI CACGTC 1 cut(s) 94
BmgT120I GGNCC 3 cut(s) 126, 400, 476
BmiI GGNNCC 3 cut(s) 451, 478, 495
BmrFI CCNGG 2 cut(s) 125, 817
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 312
BpmI CTGGAG 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 614
BpuEI CTTGAG 3 cut(s) 97, 309, 782
BpuMI CCSGG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 507
BsaI GGTCTC 2 cut(s) 255, 427
BsaJI CCNNGG 1 cut(s) 749
Bsc4I CCNNNNNNNGG 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 287, 416
Bse3DI GCAATG 2 cut(s) 589, 862
BseBI CCWGG 1 cut(s) 817
BseDI CCNNGG 1 cut(s) 749
BseGI GGATG 4 cut(s) 9, 402, 745, 802
BseLI CCNNNNNNNGG 1 cut(s) 484
BseMI GCAATG 2 cut(s) 589, 862
BseMII CTCAG 3 cut(s) 118, 271, 605
BseNI ACTGG 2 cut(s) 287, 416
BseRI GAGGAG 4 cut(s) 146, 175, 237, 245
Bsh1236I CGCG 3 cut(s) 368, 485, 518
Bsh1285I CGRYCG 1 cut(s) 303
BshFI GGCC 3 cut(s) 5, 128, 477
BsiEI CGRYCG 1 cut(s) 303
BsiHKAI GWGCWC 4 cut(s) 177, 620, 698, 739
BsiHKCI CYCGRG 1 cut(s) 750
BsiSI CCGG 2 cut(s) 124, 170
BslI CCNNNNNNNGG 1 cut(s) 484
BsmAI GTCTC 2 cut(s) 255, 427
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 3 cut(s) 5, 128, 477
Bso31I GGTCTC 2 cut(s) 255, 427
BsoBI CYCGRG 1 cut(s) 750
Bsp1286I GDGCHC 4 cut(s) 177, 620, 698, 739
Bsp143I GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
Bsp1720I GCTNAGC 1 cut(s) 614
Bsp68I TCGCGA 1 cut(s) 368
BspACI CCGC 6 cut(s) 18, 43, 149, 181, 277, 485
BspANI GGCC 3 cut(s) 5, 128, 477
BspCNI CTCAG 3 cut(s) 117, 270, 606
BspFNI CGCG 3 cut(s) 368, 485, 518
BspLI GGNNCC 3 cut(s) 451, 478, 495
BspPI GGATC 4 cut(s) 444, 457, 488, 501
BspQI GCTCTTC 2 cut(s) 182, 572
BspTNI GGTCTC 2 cut(s) 255, 427
BsrBI CCGCTC 2 cut(s) 45, 183
BsrDI GCAATG 2 cut(s) 589, 862
BsrI ACTGG 2 cut(s) 287, 416
BssECI CCNNGG 1 cut(s) 749
BssMI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 373
Bst2BI CACGAG 1 cut(s) 373
Bst2UI CCWGG 1 cut(s) 817
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 182, 572
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 338
BstDEI CTNAG 3 cut(s) 104, 257, 614
BstF5I GGATG 4 cut(s) 9, 402, 745, 802
BstFNI CGCG 3 cut(s) 368, 485, 518
BstH2I RGCGCY 1 cut(s) 111
BstHHI GCGC 2 cut(s) 110, 520
BstKTI GATC 8 cut(s) 303, 372, 385, 408, 452, 496, 843, 874
BstMAI GTCTC 2 cut(s) 255, 427
BstMBI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
BstMCI CGRYCG 1 cut(s) 303
BstMWI GCNNNNNNNGC 1 cut(s) 474
BstNI CCWGG 1 cut(s) 817
BstSCI CCNGG 2 cut(s) 123, 815
BstUI CGCG 3 cut(s) 368, 485, 518
BstV2I GAAGAC 1 cut(s) 312
BstX2I RGATCY 2 cut(s) 449, 493
BstYI RGATCY 2 cut(s) 449, 493
BsuRI GGCC 3 cut(s) 5, 128, 477
BtrI CACGTC 1 cut(s) 94
BtsCI GGATG 4 cut(s) 9, 402, 745, 802
BtuMI TCGCGA 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 338
CfoI GCGC 2 cut(s) 110, 520
Cfr13I GGNCC 3 cut(s) 126, 400, 476
Csp6I GTAC 1 cut(s) 349
CspCI CAANNNNNGTGG 2 cut(s) 705, 740
CviAII CATG 2 cut(s) 145, 851
CviQI GTAC 1 cut(s) 349
DdeI CTNAG 3 cut(s) 104, 257, 614
DpnI GATC 8 cut(s) 302, 371, 384, 407, 451, 495, 842, 873
DpnII GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 182, 572
EarI CTCTTC 2 cut(s) 182, 572
Ecl136II GAGCTC 4 cut(s) 175, 618, 696, 737
Eco24I GRGCYC 4 cut(s) 177, 620, 698, 739
Eco31I GGTCTC 2 cut(s) 255, 427
Eco47I GGWCC 1 cut(s) 400
Eco53kI GAGCTC 4 cut(s) 175, 618, 696, 737
Eco88I CYCGRG 1 cut(s) 750
EcoICRI GAGCTC 4 cut(s) 175, 618, 696, 737
EcoRII CCWGG 1 cut(s) 815
EcoT38I GRGCYC 4 cut(s) 177, 620, 698, 739
FaeI CATG 2 cut(s) 148, 854
FaiI YATR 7 cut(s) 35, 146, 504, 524, 783, 785, 852
FatI CATG 2 cut(s) 144, 850
Fnu4HI GCNGC 2 cut(s) 18, 150
FokI GGATG 3 cut(s) 409, 732, 789
FriOI GRGCYC 4 cut(s) 177, 620, 698, 739
Fsp4HI GCNGC 2 cut(s) 18, 150
GlaI GCGC 2 cut(s) 109, 519
GluI GCNGC 2 cut(s) 18, 150
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 111
HaeIII GGCC 3 cut(s) 5, 128, 477
HapII CCGG 2 cut(s) 124, 170
HhaI GCGC 2 cut(s) 110, 520
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 2 cut(s) 148, 854
Hin6I GCGC 2 cut(s) 108, 518
HinP1I GCGC 2 cut(s) 108, 518
HinfI GANTC 7 cut(s) 343, 391, 433, 460, 530, 670, 812
HpaII CCGG 2 cut(s) 124, 170
HphI GGTGA 2 cut(s) 130, 242
Hpy166II GTNNAC 1 cut(s) 794
Hpy188I TCNGA 4 cut(s) 49, 260, 387, 396
Hpy188III TCNNGA 7 cut(s) 114, 367, 373, 403, 662, 674, 806
Hpy8I GTNNAC 1 cut(s) 794
HpyAV CCTTC 2 cut(s) 440, 490
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 2 cut(s) 93, 507
HpyCH4V TGCA 2 cut(s) 641, 652
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 3 cut(s) 104, 257, 614
HpySE526I ACGT 2 cut(s) 93, 507
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 2 cut(s) 148, 854
HspAI GCGC 2 cut(s) 108, 518
Kzo9I GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
LguI GCTCTTC 2 cut(s) 182, 572
LmnI GCTCC 5 cut(s) 50, 172, 188, 727, 734
MaeII ACGT 2 cut(s) 93, 507
MaeIII GTNAC 1 cut(s) 700
MalI GATC 8 cut(s) 302, 371, 384, 407, 451, 495, 842, 873
MbiI CCGCTC 2 cut(s) 45, 183
MboI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
MfeI CAATTG 1 cut(s) 642
MflI RGATCY 2 cut(s) 449, 493
MhlI GDGCHC 4 cut(s) 177, 620, 698, 739
MluCI AATT 5 cut(s) 378, 499, 535, 600, 642
MlyI GAGTC 2 cut(s) 337, 524
MmeI TCCRAC 2 cut(s) 72, 255
MseI TTAA 2 cut(s) 270, 895
MslI CAYNNNNRTG 3 cut(s) 143, 807, 855
MspI CCGG 2 cut(s) 124, 170
MspR9I CCNGG 2 cut(s) 125, 817
MunI CAATTG 1 cut(s) 642
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 817
MvnI CGCG 3 cut(s) 368, 485, 518
MwoI GCNNNNNNNGC 1 cut(s) 474
NciI CCSGG 1 cut(s) 125
NdeII GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
NlaIII CATG 2 cut(s) 148, 854
NlaIV GGNNCC 3 cut(s) 451, 478, 495
NmuCI GTSAC 1 cut(s) 700
NruI TCGCGA 1 cut(s) 368
PciSI GCTCTTC 2 cut(s) 182, 572
PcsI WCGNNNNNNNCGW 1 cut(s) 21
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 5 cut(s) 391, 433, 460, 670, 812
PfoI TCCNGGA 1 cut(s) 815
PkrI GCNGC 2 cut(s) 19, 151
Ple19I CGATCG 1 cut(s) 303
PleI GAGTC 2 cut(s) 337, 524
PpsI GAGTC 2 cut(s) 337, 524
Psp124BI GAGCTC 4 cut(s) 177, 620, 698, 739
Psp6I CCWGG 1 cut(s) 815
PspGI CCWGG 1 cut(s) 815
PspN4I GGNNCC 3 cut(s) 451, 478, 495
PspPI GGNCC 3 cut(s) 126, 400, 476
PsuI RGATCY 2 cut(s) 449, 493
PvuI CGATCG 1 cut(s) 303
RruI TCGCGA 1 cut(s) 368
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
RseI CAYNNNNRTG 3 cut(s) 143, 807, 855
SacI GAGCTC 4 cut(s) 177, 620, 698, 739
SapI GCTCTTC 2 cut(s) 182, 572
SaqAI TTAA 2 cut(s) 270, 895
SatI GCNGC 2 cut(s) 18, 150
Sau3AI GATC 8 cut(s) 300, 369, 382, 405, 449, 493, 840, 871
Sau96I GGNCC 3 cut(s) 126, 400, 476
SchI GAGTC 2 cut(s) 337, 524
ScrFI CCNGG 2 cut(s) 125, 817
SduI GDGCHC 4 cut(s) 177, 620, 698, 739
SinI GGWCC 1 cut(s) 400
SmiMI CAYNNNNRTG 3 cut(s) 143, 807, 855
SmlI CTYRAG 3 cut(s) 112, 324, 761
SmoI CTYRAG 3 cut(s) 112, 324, 761
Sse9I AATT 5 cut(s) 378, 499, 535, 600, 642
SsiI CCGC 6 cut(s) 18, 43, 149, 181, 277, 485
SstI GAGCTC 4 cut(s) 177, 620, 698, 739
StyD4I CCNGG 2 cut(s) 123, 815
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 2 cut(s) 96, 510
TaqI TCGA 4 cut(s) 299, 303, 458, 598
TasI AATT 5 cut(s) 378, 499, 535, 600, 642
TauI GCSGC 2 cut(s) 20, 152
TfiI GAWTC 5 cut(s) 391, 433, 460, 670, 812
Tru1I TTAA 2 cut(s) 270, 895
Tru9I TTAA 2 cut(s) 270, 895
TseFI GTSAC 1 cut(s) 700
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 3 cut(s) 770, 825, 839
TspGWI ACGGA 1 cut(s) 442
VpaK11BI GGWCC 1 cut(s) 400
ZraI GACGTC 1 cut(s) 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.