Rh2BG564300

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001427
Physical Location & Seq
Forward (+)
77623692 .. 77624503
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG564300.1

Sequence Viewer

Length: 711 bp
ATGGAGAAGCCTCAAGGTTCTTGCTTGCCGACTCTGTACCGGAAAAAGAACGTCGCGGTTACAAGAATTGATCGGAAGAATCGGACGGTCCAGATCAACCGGGTTTGGGTCTCGCACCCGAATCTGTTTCTAGAAGGATCCGTTTCGATTCACGGCGTTCTTGGCCCGTTCGCCGCTGTGGATCCCGAATATGACGTCATTCACGCGCCTGTGTGCGACTCCAATTCTAGCGTCGTTTCTGGTTCTGGTGGAGTGAAGCACAAGAAGAAGAGCAATGTGGAATGGGGTCGGATTATTAGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGGCTGCATTCTGTTCTTGATGGGATTCTTGAAGATGAGAGAAATGTGAGCTCTGTGACGATTTTTGTGCCGCCAAGATTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTTTCACATTGTGCCTCAGAGGCTTACACACAGGGAGCTTTCGGCATTGCCTGCGAGGACTCTGCTCAGGACTATGGTTCATGGTGATCAGCCTTTGGAAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCATCAATGGAGTGAGGATTGTGGCGCCCGACATCTATTCTTCGAACAACTTGGCTGTCCATGGGATTTCCCGAGCTTTTGAGGTGAATGATCTGCCTAAAACCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

236

Amino Acids

26.17

Weight (kDa)

9.65

Isoelectric Point (pI)

32.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fasciclin PF02469 130 - 226 1e-06 Fasciclin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 198
AccB1I GGYRCC 1 cut(s) 625
AccII CGCG 2 cut(s) 56, 206
AciI CCGC 3 cut(s) 56, 174, 407
AclWI GGATC 4 cut(s) 132, 145, 176, 189
AcyI GRCGYC 2 cut(s) 195, 626
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 38
AfiI CCNNNNNNNGG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 368
AluBI AGCT 6 cut(s) 309, 387, 421, 428, 505, 677
AluI AGCT 6 cut(s) 309, 387, 421, 428, 505, 677
Alw21I GWGCWC 3 cut(s) 311, 389, 430
Alw26I GTCTC 1 cut(s) 115
AlwI GGATC 4 cut(s) 132, 145, 176, 189
Ama87I CYCGRG 2 cut(s) 441, 672
AoxI GGCC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 340
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AspLEI GCGC 2 cut(s) 208, 628
AspS9I GGNCC 2 cut(s) 88, 164
AsuC2I CCSGG 1 cut(s) 101
AsuHPI GGTGA 2 cut(s) 563, 697
AsuII TTCGAA 1 cut(s) 644
AvaI CYCGRG 2 cut(s) 441, 672
AvaII GGWCC 1 cut(s) 88
BamHI GGATCC 2 cut(s) 137, 181
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 3 cut(s) 311, 389, 430
Bbv12I GWGCWC 3 cut(s) 311, 389, 430
BbvI GCAGC 1 cut(s) 327
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 169, 310
BcgI CGANNNNNNTGC 4 cut(s) 385, 419, 511, 545
BclI TGATCA 1 cut(s) 553
BcnI CCSGG 1 cut(s) 101
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 2 cut(s) 131, 228
BfoI RGCGCY 1 cut(s) 629
BglI GCCNNNNNGGC 1 cut(s) 487
BisI GCNGC 3 cut(s) 174, 341, 407
BlpI GCTNAGC 1 cut(s) 305
BlsI GCNGC 3 cut(s) 175, 342, 408
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 1 cut(s) 88
BmeT110I CYCGRG 2 cut(s) 441, 672
BmgT120I GGNCC 2 cut(s) 88, 164
BmiI GGNNCC 3 cut(s) 139, 183, 627
BmrFI CCNGG 1 cut(s) 101
BmrI ACTGGG 1 cut(s) 582
BmuI ACTGGG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 533
Bpu1102I GCTNAGC 1 cut(s) 305
Bpu14I TTCGAA 1 cut(s) 644
BpuEI CTTGAG 1 cut(s) 473
BpuMI CCSGG 1 cut(s) 101
BsaHI GRCGYC 2 cut(s) 195, 626
BsaI GGTCTC 1 cut(s) 115
BsaJI CCNNGG 2 cut(s) 440, 661
BsaWI WCCGGW 1 cut(s) 39
Bsc4I CCNNNNNNNGG 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 577
Bse3DI GCAATG 2 cut(s) 280, 512
BseDI CCNNGG 2 cut(s) 440, 661
BseGI GGATG 1 cut(s) 436
BseLI CCNNNNNNNGG 1 cut(s) 106
BseMI GCAATG 2 cut(s) 280, 512
BseMII CTCAG 3 cut(s) 296, 497, 547
BseNI ACTGG 1 cut(s) 577
BseXI GCAGC 1 cut(s) 327
Bsh1236I CGCG 2 cut(s) 56, 206
BshFI GGCC 1 cut(s) 165
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 3 cut(s) 311, 389, 430
BsiHKCI CYCGRG 2 cut(s) 441, 672
BsiSI CCGG 3 cut(s) 40, 100, 593
BslI CCNNNNNNNGG 1 cut(s) 106
BsmAI GTCTC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 343
BsnI GGCC 1 cut(s) 165
Bso31I GGTCTC 1 cut(s) 115
BsoBI CYCGRG 2 cut(s) 441, 672
Bsp119I TTCGAA 1 cut(s) 644
Bsp1286I GDGCHC 3 cut(s) 311, 389, 430
Bsp143I GATC 6 cut(s) 70, 93, 137, 181, 553, 691
Bsp1720I GCTNAGC 1 cut(s) 305
Bsp19I CCATGG 1 cut(s) 661
BspACI CCGC 3 cut(s) 56, 174, 407
BspANI GGCC 1 cut(s) 165
BspCNI CTCAG 3 cut(s) 297, 496, 546
BspFNI CGCG 2 cut(s) 56, 206
BspLI GGNNCC 3 cut(s) 139, 183, 627
BspPI GGATC 4 cut(s) 132, 145, 176, 189
BspQI GCTCTTC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 644
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 115
BsrDI GCAATG 2 cut(s) 280, 512
BsrI ACTGG 1 cut(s) 577
BssECI CCNNGG 2 cut(s) 440, 661
BssMI GATC 6 cut(s) 70, 93, 137, 181, 553, 691
BssNI GRCGYC 2 cut(s) 195, 626
BssT1I CCWWGG 1 cut(s) 661
Bst4CI ACNGT 1 cut(s) 88
Bst6I CTCTTC 1 cut(s) 263
BstACI GRCGYC 2 cut(s) 195, 626
BstAPI GCANNNNNTGC 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 644
BstC8I GCNNGC 2 cut(s) 26, 519
BstDEI CTNAG 3 cut(s) 305, 483, 533
BstDSI CCRYGG 1 cut(s) 661
BstF5I GGATG 1 cut(s) 436
BstFNI CGCG 2 cut(s) 56, 206
BstH2I RGCGCY 1 cut(s) 629
BstHHI GCGC 2 cut(s) 208, 628
BstKTI GATC 6 cut(s) 73, 96, 140, 184, 556, 694
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 6 cut(s) 70, 93, 137, 181, 553, 691
BstMWI GCNNNNNNNGC 3 cut(s) 162, 487, 518
BstSCI CCNGG 1 cut(s) 99
BstUI CGCG 2 cut(s) 56, 206
BstV1I GCAGC 1 cut(s) 327
BstX2I RGATCY 2 cut(s) 137, 181
BstYI RGATCY 2 cut(s) 137, 181
BsuRI GGCC 1 cut(s) 165
BtgI CCRYGG 1 cut(s) 661
BtsCI GGATG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 26, 519
CfoI GCGC 2 cut(s) 208, 628
Cfr13I GGNCC 2 cut(s) 88, 164
CseI GACGC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 37
CviAII CATG 3 cut(s) 548, 589, 662
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 3 cut(s) 305, 483, 533
DinI GGCGCC 1 cut(s) 627
DpnI GATC 6 cut(s) 72, 95, 139, 183, 555, 693
DpnII GATC 6 cut(s) 70, 93, 137, 181, 553, 691
DraIII CACNNNGTG 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 3 cut(s) 309, 387, 428
Eco130I CCWWGG 1 cut(s) 661
Eco24I GRGCYC 3 cut(s) 311, 389, 430
Eco31I GGTCTC 1 cut(s) 115
Eco47I GGWCC 1 cut(s) 88
Eco53kI GAGCTC 3 cut(s) 309, 387, 428
Eco88I CYCGRG 2 cut(s) 441, 672
EcoICRI GAGCTC 3 cut(s) 309, 387, 428
EcoT14I CCWWGG 1 cut(s) 661
EcoT38I GRGCYC 3 cut(s) 311, 389, 430
EgeI GGCGCC 1 cut(s) 627
EheI GGCGCC 1 cut(s) 627
ErhI CCWWGG 1 cut(s) 661
FaeI CATG 3 cut(s) 551, 592, 665
FaiI YATR 6 cut(s) 192, 542, 549, 581, 590, 663
FatI CATG 3 cut(s) 547, 588, 661
FbaI TGATCA 1 cut(s) 553
Fnu4HI GCNGC 3 cut(s) 174, 341, 407
FokI GGATG 1 cut(s) 423
FriOI GRGCYC 3 cut(s) 311, 389, 430
Fsp4HI GCNGC 3 cut(s) 174, 341, 407
FspBI CTAG 2 cut(s) 131, 228
GlaI GCGC 2 cut(s) 207, 627
GluI GCNGC 3 cut(s) 174, 341, 407
HaeII RGCGCY 1 cut(s) 629
HaeIII GGCC 1 cut(s) 165
HapII CCGG 3 cut(s) 40, 100, 593
HgaI GACGC 1 cut(s) 220
HhaI GCGC 2 cut(s) 208, 628
Hin1I GRCGYC 2 cut(s) 195, 626
Hin1II CATG 3 cut(s) 551, 592, 665
Hin6I GCGC 2 cut(s) 206, 626
HinP1I GCGC 2 cut(s) 206, 626
HinfI GANTC 7 cut(s) 31, 79, 121, 148, 218, 361, 526
HpaII CCGG 3 cut(s) 40, 100, 593
HphI GGTGA 2 cut(s) 563, 697
Hpy188I TCNGA 4 cut(s) 75, 84, 291, 486
Hpy188III TCNNGA 7 cut(s) 91, 131, 185, 353, 365, 535, 672
Hpy99I CGWCG 2 cut(s) 56, 236
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4IV ACGT 2 cut(s) 51, 195
HpyCH4V TGCA 2 cut(s) 332, 343
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 487, 518
HpyF3I CTNAG 3 cut(s) 305, 483, 533
HpySE526I ACGT 2 cut(s) 51, 195
Hsp92I GRCGYC 2 cut(s) 195, 626
Hsp92II CATG 3 cut(s) 551, 592, 665
HspAI GCGC 2 cut(s) 206, 626
KasI GGCGCC 1 cut(s) 625
Ksp22I TGATCA 1 cut(s) 553
Kzo9I GATC 6 cut(s) 70, 93, 137, 181, 553, 691
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 3 cut(s) 418, 425, 502
Lsp1109I GCAGC 1 cut(s) 327
MaeI CTAG 2 cut(s) 131, 228
MaeII ACGT 2 cut(s) 51, 195
MaeIII GTNAC 3 cut(s) 58, 391, 568
MalI GATC 6 cut(s) 72, 95, 139, 183, 555, 693
MboI GATC 6 cut(s) 70, 93, 137, 181, 553, 691
MboII GAAGA 6 cut(s) 88, 277, 280, 380, 469, 633
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 2 cut(s) 137, 181
MhlI GDGCHC 3 cut(s) 311, 389, 430
MluCI AATT 4 cut(s) 66, 223, 333, 596
Mly113I GGCGCC 1 cut(s) 626
MlyI GAGTC 3 cut(s) 25, 212, 520
MmeI TCCRAC 1 cut(s) 269
MnlI CCTC 8 cut(s) 21, 450, 459, 480, 492, 516, 609, 676
MspA1I CMGCKG 1 cut(s) 176
MspI CCGG 3 cut(s) 40, 100, 593
MspR9I CCNGG 1 cut(s) 101
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 343
MvnI CGCG 2 cut(s) 56, 206
MwoI GCNNNNNNNGC 3 cut(s) 162, 487, 518
NarI GGCGCC 1 cut(s) 626
NciI CCSGG 1 cut(s) 101
NcoI CCATGG 1 cut(s) 661
NdeII GATC 6 cut(s) 70, 93, 137, 181, 553, 691
NlaIII CATG 3 cut(s) 551, 592, 665
NlaIV GGNNCC 3 cut(s) 139, 183, 627
NmuCI GTSAC 2 cut(s) 391, 568
NspV TTCGAA 1 cut(s) 644
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 79, 121, 148, 361
PkrI GCNGC 3 cut(s) 175, 342, 408
PleI GAGTC 3 cut(s) 25, 212, 520
PluTI GGCGCC 1 cut(s) 629
PpsI GAGTC 3 cut(s) 25, 212, 520
Psp124BI GAGCTC 3 cut(s) 311, 389, 430
PspN4I GGNNCC 3 cut(s) 139, 183, 627
PspPI GGNCC 2 cut(s) 88, 164
PsuI RGATCY 2 cut(s) 137, 181
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SacI GAGCTC 3 cut(s) 311, 389, 430
SapI GCTCTTC 1 cut(s) 263
SatI GCNGC 3 cut(s) 174, 341, 407
Sau3AI GATC 6 cut(s) 70, 93, 137, 181, 553, 691
Sau96I GGNCC 2 cut(s) 88, 164
SchI GAGTC 3 cut(s) 25, 212, 520
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 3 cut(s) 311, 389, 430
SfoI GGCGCC 1 cut(s) 627
SfuI TTCGAA 1 cut(s) 644
SinI GGWCC 1 cut(s) 88
SmlI CTYRAG 2 cut(s) 12, 452
SmoI CTYRAG 2 cut(s) 12, 452
Sse9I AATT 4 cut(s) 66, 223, 333, 596
SsiI CCGC 3 cut(s) 56, 174, 407
SspDI GGCGCC 1 cut(s) 625
SspMI CTAG 2 cut(s) 131, 228
SstI GAGCTC 3 cut(s) 311, 389, 430
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 661
TaaI ACNGT 1 cut(s) 88
TaiI ACGT 2 cut(s) 54, 198
TaqI TCGA 2 cut(s) 146, 644
TasI AATT 4 cut(s) 66, 223, 333, 596
TauI GCSGC 2 cut(s) 176, 409
TfiI GAWTC 4 cut(s) 79, 121, 148, 361
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 2 cut(s) 391, 568
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 2 cut(s) 391, 568
TspDTI ATGAA 2 cut(s) 536, 577
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 1 cut(s) 577
VpaK11BI GGWCC 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 130
XspI CTAG 2 cut(s) 131, 228
ZraI GACGTC 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.