Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034845.1

Orthogroup ID

OG0001427

Physical Location & Seq

Genomic Coordinates Forward (+)

3973 .. 4808

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034845.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

atggccgttatcctctccgccatcgcaatctccatgaccttccgctccgaccccactcccaaacccccaaatccgccacacccatcagccatgtatctctctcacagcctcaagaactctccaggccttcggcttcaccatcaagggggcactcctccaaatctcaccggagctcttcatccccttgtcgaactccaccatcttcgcaatcgccgactcccatatctccaacacctctcttcatcaaccgagtttgggtctcgcactggaatctgtttgtggaaggatccttttcgattcaaggtgttcttgaccccttcacaatgttcttggcccgttcttgaagatgagagaaatgtgagctctgtgacgatttttgtgccactaagattggagattggagctcatcatcatcctcaatctttgcttgagaagattgtgaggtttcacattgtgcctcagagatttacacacagggagctttcggctttgcctgcgaggactttgctcaggactatggttcatggtgatcagcctctgggagtcactgggtttatgagtttcatgtcggaattggtcctcaatggagtgaggatcatggtgctcgacatctattcttcgaacaacttggttgtccatgggatttcccgagctttcgaggtgaatgatttgcctaatacccaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Fasciclin

Protein Analysis

228

Amino Acids

25.63

Weight (kDa)

9.82

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06920
fragaria_vesca	FvH4_6g43900
malus_domestica	MD09G1127600.v1.1
prunus_persica	Prupe.3G223600_v2.0.a1
pyrus_communis	pycom09g05150
rosa_chinensis	RchiOBHm_Chr1g0324271 RchiOBHm_Chr2g0160671 RchiOBHm_Chr4g0411281 RchiOBHm_Chr6g0278031
rosa_laevigata	RLG00000021233 RLG00000028539
rosa_multiflora	Rmu_co7999010.1_g000001 Rmu_sc0000543.1_g000032 Rmu_sc0002343.1_g000015 Rmu_sc0012217.1_g000005 Rmu_sc0018619.1_g000004 Rmu_sc0034845.1_g000001 Rmu_sc0038508.1_g000001
rosa_roxburghii	Rroxscaffold_2G00089520 Rroxscaffold_5G00342920 Rroxscaffold_7G00214560
rosa_rugosa	Rorug02G0484700 Rorug04G0007500 Rorug05G0314800 Rorug06G0332500
rosa_samantha	Rh2AG315600 Rh2AG549800 Rh2BG054100 Rh2BG564300 Rh2CG056400 Rh2CG534300 Rh2DG573200 Rh3CG224500 Rh3CG242900 Rh3DG341500 Rh4AG166600 Rh4BG191400 Rh4DG161300 Rh5BG271500 Rh5BG561300 Rh5CG583800 Rh6BG160300 Rh6BG161200 Rh6CG457800 Rh6DG145800 Rh6DG146500
rosa_wichuraiana	Rw0G005530 Rw0G010110 Rw2G045550 Rw3G018120 Rw4G013780 Rw5G040990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	45
AciI	CCGC	3 cut(s)	18, 43, 74
AclWI	GGATC	3 cut(s)	281, 294, 602
AcoI	YGGCCR	1 cut(s)	3
AdeI	CACNNNGTG	1 cut(s)	454
AfiI	CCNNNNNNNGG	2 cut(s)	145, 255
AgsI	TTSAA	2 cut(s)	301, 344
AjnI	CCWGG	1 cut(s)	121
AluBI	AGCT	5 cut(s)	173, 363, 404, 481, 653
AluI	AGCT	5 cut(s)	173, 363, 404, 481, 653
Alw21I	GWGCWC	4 cut(s)	175, 365, 406, 606
Alw26I	GTCTC	1 cut(s)	264
AlwI	GGATC	3 cut(s)	281, 294, 602
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	648
AoxI	GGCC	3 cut(s)	3, 124, 332
AspS9I	GGNCC	2 cut(s)	333, 577
AsuHPI	GGTGA	4 cut(s)	128, 157, 539, 673
AsuII	TTCGAA	1 cut(s)	620
AvaI	CYCGRG	1 cut(s)	648
AvaII	GGWCC	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	152
BamHI	GGATCC	1 cut(s)	286
BanII	GRGCYC	3 cut(s)	175, 365, 406
Bbv12I	GWGCWC	4 cut(s)	175, 365, 406, 606
BccI	CCATC	4 cut(s)	29, 91, 147, 207
BcgI	CGANNNNNNTGC	4 cut(s)	361, 395, 487, 521
BciT130I	CCWGG	1 cut(s)	123
BclI	TGATCA	1 cut(s)	529
BcoDI	GTCTC	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	123
Bme18I	GGWCC	1 cut(s)	577
BmeT110I	CYCGRG	1 cut(s)	648
BmgT120I	GGNCC	2 cut(s)	333, 577
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	558
BmuI	ACTGGG	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	509
Bpu14I	TTCGAA	1 cut(s)	620
BpuEI	CTTGAG	2 cut(s)	95, 449
BsaI	GGTCTC	1 cut(s)	264
BsaJI	CCNNGG	1 cut(s)	637
BsaWI	WCCGGW	1 cut(s)	167
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 255
Bse1I	ACTGG	2 cut(s)	271, 553
BseBI	CCWGG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	637
BseGI	GGATG	2 cut(s)	178, 412
BseLI	CCNNNNNNNGG	2 cut(s)	145, 255
BseMII	CTCAG	2 cut(s)	473, 523
BseNI	ACTGG	2 cut(s)	271, 553
BseRI	GAGGAG	1 cut(s)	144
BseSI	GKGCMC	1 cut(s)	152
BshFI	GGCC	3 cut(s)	5, 126, 334
BsiHKAI	GWGCWC	4 cut(s)	175, 365, 406, 606
BsiHKCI	CYCGRG	1 cut(s)	648
BsiSI	CCGG	1 cut(s)	168
BslI	CCNNNNNNNGG	2 cut(s)	145, 255
BsmAI	GTCTC	1 cut(s)	264
BsnI	GGCC	3 cut(s)	5, 126, 334
Bso31I	GGTCTC	1 cut(s)	264
BsoBI	CYCGRG	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	620
Bsp1286I	GDGCHC	5 cut(s)	152, 175, 365, 406, 606
Bsp143I	GATC	3 cut(s)	286, 529, 594
Bsp19I	CCATGG	1 cut(s)	637
BspACI	CCGC	3 cut(s)	18, 43, 74
BspANI	GGCC	3 cut(s)	5, 126, 334
BspCNI	CTCAG	2 cut(s)	472, 522
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	3 cut(s)	281, 294, 602
BspQI	GCTCTTC	1 cut(s)	180
BspT104I	TTCGAA	1 cut(s)	620
BspTNI	GGTCTC	1 cut(s)	264
BsrBI	CCGCTC	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	271, 553
BssECI	CCNNGG	1 cut(s)	637
BssMI	GATC	3 cut(s)	286, 529, 594
BssT1I	CCWWGG	1 cut(s)	637
Bst2UI	CCWGG	1 cut(s)	123
Bst6I	CTCTTC	2 cut(s)	180, 244
BstBI	TTCGAA	1 cut(s)	620
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	3 cut(s)	386, 459, 509
BstDSI	CCRYGG	1 cut(s)	637
BstF5I	GGATG	2 cut(s)	178, 412
BstKTI	GATC	3 cut(s)	289, 532, 597
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	286, 529, 594
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstNI	CCWGG	1 cut(s)	123
BstSCI	CCNGG	1 cut(s)	121
BstSLI	GKGCMC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BsuRI	GGCC	3 cut(s)	5, 126, 334
BtgI	CCRYGG	1 cut(s)	637
BtgZI	GCGATG	1 cut(s)	7
BtsCI	GGATG	2 cut(s)	178, 412
BtsIMutI	CAGTG	2 cut(s)	264, 546
Cac8I	GCNNGC	1 cut(s)	495
CaiI	CAGNNNCTG	1 cut(s)	538
Cfr13I	GGNCC	2 cut(s)	333, 577
CspCI	CAANNNNNGTGG	2 cut(s)	372, 407
CviAII	CATG	6 cut(s)	34, 91, 524, 565, 598, 638
DdeI	CTNAG	3 cut(s)	386, 459, 509
DpnI	GATC	3 cut(s)	288, 531, 596
DpnII	GATC	3 cut(s)	286, 529, 594
DraIII	CACNNNGTG	1 cut(s)	454
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	180, 244
EarI	CTCTTC	2 cut(s)	180, 244
EciI	GGCGGA	2 cut(s)	7, 63
Ecl136II	GAGCTC	3 cut(s)	173, 363, 404
Eco130I	CCWWGG	1 cut(s)	637
Eco147I	AGGCCT	1 cut(s)	126
Eco24I	GRGCYC	3 cut(s)	175, 365, 406
Eco31I	GGTCTC	1 cut(s)	264
Eco47I	GGWCC	1 cut(s)	577
Eco53kI	GAGCTC	3 cut(s)	173, 363, 404
Eco88I	CYCGRG	1 cut(s)	648
EcoICRI	GAGCTC	3 cut(s)	173, 363, 404
EcoRII	CCWGG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	637
EcoT38I	GRGCYC	3 cut(s)	175, 365, 406
ErhI	CCWWGG	1 cut(s)	637
FaeI	CATG	6 cut(s)	37, 94, 527, 568, 601, 641
FaiI	YATR	9 cut(s)	35, 92, 223, 518, 525, 557, 566, 599, 639
FalI	AAGNNNNNCTT	2 cut(s)	293, 325
FatI	CATG	6 cut(s)	33, 90, 523, 564, 597, 637
FbaI	TGATCA	1 cut(s)	529
FokI	GGATG	2 cut(s)	165, 399
FriOI	GRGCYC	3 cut(s)	175, 365, 406
GsuI	CTGGAG	1 cut(s)	105
HaeIII	GGCC	3 cut(s)	5, 126, 334
HapII	CCGG	1 cut(s)	168
Hin1II	CATG	6 cut(s)	37, 94, 527, 568, 601, 641
HinfI	GANTC	4 cut(s)	216, 270, 297, 543
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	4 cut(s)	128, 157, 539, 673
Hpy188I	TCNGA	3 cut(s)	49, 462, 571
Hpy188III	TCNNGA	5 cut(s)	112, 310, 341, 511, 648
HpyAV	CCTTC	4 cut(s)	49, 137, 277, 327
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	3 cut(s)	386, 459, 509
Hsp92II	CATG	6 cut(s)	37, 94, 527, 568, 601, 641
Ksp22I	TGATCA	1 cut(s)	529
Kzo9I	GATC	3 cut(s)	286, 529, 594
LguI	GCTCTTC	1 cut(s)	180
LmnI	GCTCC	4 cut(s)	50, 170, 401, 478
LpnPI	CCDG	9 cut(s)	108, 135, 181, 252, 460, 496, 507, 524, 534
MaeIII	GTNAC	2 cut(s)	367, 544
MalI	GATC	3 cut(s)	288, 531, 596
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	3 cut(s)	286, 529, 594
MboII	GAAGA	6 cut(s)	167, 194, 231, 356, 445, 609
MflI	RGATCY	1 cut(s)	286
MhlI	GDGCHC	5 cut(s)	152, 175, 365, 406, 606
MluCI	AATT	1 cut(s)	572
MlyI	GAGTC	2 cut(s)	210, 552
MmeI	TCCRAC	3 cut(s)	72, 253, 549
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	1 cut(s)	123
MvaI	CCWGG	1 cut(s)	123
MwoI	GCNNNNNNNGC	1 cut(s)	494
NcoI	CCATGG	1 cut(s)	637
NdeII	GATC	3 cut(s)	286, 529, 594
NlaIII	CATG	6 cut(s)	37, 94, 527, 568, 601, 641
NlaIV	GGNNCC	1 cut(s)	288
NmuCI	GTSAC	2 cut(s)	367, 544
NspV	TTCGAA	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	126
PciSI	GCTCTTC	1 cut(s)	180
PcsI	WCGNNNNNNNCGW	1 cut(s)	211
PfeI	GAWTC	2 cut(s)	270, 297
PleI	GAGTC	2 cut(s)	210, 551
PpsI	GAGTC	2 cut(s)	210, 551
Psp124BI	GAGCTC	3 cut(s)	175, 365, 406
Psp6I	CCWGG	1 cut(s)	121
PspGI	CCWGG	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	333, 577
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	286
SacI	GAGCTC	3 cut(s)	175, 365, 406
SapI	GCTCTTC	1 cut(s)	180
Sau3AI	GATC	3 cut(s)	286, 529, 594
Sau96I	GGNCC	2 cut(s)	333, 577
SchI	GAGTC	2 cut(s)	210, 552
ScrFI	CCNGG	1 cut(s)	123
SduI	GDGCHC	5 cut(s)	152, 175, 365, 406, 606
SfuI	TTCGAA	1 cut(s)	620
SinI	GGWCC	1 cut(s)	577
SmlI	CTYRAG	2 cut(s)	110, 428
SmoI	CTYRAG	2 cut(s)	110, 428
Sse9I	AATT	1 cut(s)	572
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	18, 43, 74
SstI	GAGCTC	3 cut(s)	175, 365, 406
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	121
StyI	CCWWGG	1 cut(s)	637
TaqI	TCGA	5 cut(s)	189, 295, 606, 620, 657
TasI	AATT	1 cut(s)	572
TfiI	GAWTC	2 cut(s)	270, 297
TscAI	CASTG	2 cut(s)	271, 553
TseFI	GTSAC	2 cut(s)	367, 544
Tsp45I	GTSAC	2 cut(s)	367, 544
TspDTI	ATGAA	4 cut(s)	167, 231, 512, 553
TspRI	CASTG	2 cut(s)	271, 553
VpaK11BI	GGWCC	1 cut(s)	577

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.