RchiOBHm_Chr4g0411281

Fasciclin-like arabinogalactan protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001427
Physical Location & Seq
Reverse (-)
35040004 .. 35040489
486 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38210

Sequence Viewer

Length: 486 bp
ATGGATCCCAATTATGATGTCATTCACGCGCCTGTGTGCGAGTCCAATTCGAGTGTCGTTTTTGGTTCTGGTGGATTGAAGAAGAAGAAGAGCAATATGGAATGGGGTCGGATTGTTTGGTTGCTGAGCTCAAAGGGGTTTGTGCCGTTTGCAATTGGACCGCATTCTGTTCTTGATGGGATTCTTAAAGATGAGAGAAATGTGAGCTCTGTGACTATTTTTGTGGCACCAAGCTTGGAGCTTGGAGCTCATCATCATCCTCGGGCTTTGCTTGAGAAGATTGTGAGGTATCACATTGTGCCTCAGAGGCTTAGACACAGGGAGCTTTCGGCCTTGCCTGCAAGGACTCTGCTCAGGACTATGGTTCTTGGTGATCAGCCTCTGGAAGTCACTGGGTTTATGAGTTTCATGCCGGAATTGGTCTTCAATGGAGTGAGTATCGTGGCGCCTGACATCTATTCTTCAAACCCCGAGCTTTCGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Fasciclin

Protein Analysis

161

Amino Acids

17.87

Weight (kDa)

8.82

Isoelectric Point (pI)

40.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 226, 445
AccII CGCG 1 cut(s) 29
AciI CCGC 1 cut(s) 161
AclWI GGATC 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 446
AdeI CACNNNGTG 1 cut(s) 298
AgsI TTSAA 3 cut(s) 79, 427, 465
AluBI AGCT 7 cut(s) 129, 207, 234, 241, 248, 325, 475
AluI AGCT 7 cut(s) 129, 207, 234, 241, 248, 325, 475
Alw21I GWGCWC 3 cut(s) 131, 209, 250
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 382
Ama87I CYCGRG 2 cut(s) 261, 470
AoxI GGCC 1 cut(s) 330
AspLEI GCGC 2 cut(s) 31, 448
AspS9I GGNCC 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 383
AvaI CYCGRG 2 cut(s) 261, 470
AvaII GGWCC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 2 cut(s) 226, 445
BanII GRGCYC 3 cut(s) 131, 209, 250
BbsI GAAGAC 1 cut(s) 415
Bbv12I GWGCWC 3 cut(s) 131, 209, 250
BccI CCATC 1 cut(s) 170
BceAI ACGGC 1 cut(s) 130
BclI TGATCA 1 cut(s) 373
BfoI RGCGCY 1 cut(s) 449
BglI GCCNNNNNGGC 1 cut(s) 307
BlpI GCTNAGC 1 cut(s) 125
Bme18I GGWCC 1 cut(s) 158
BmeT110I CYCGRG 2 cut(s) 261, 470
BmgT120I GGNCC 1 cut(s) 158
BmiI GGNNCC 3 cut(s) 6, 228, 447
BmrI ACTGGG 1 cut(s) 402
BmuI ACTGGG 1 cut(s) 402
BpiI GAAGAC 1 cut(s) 415
Bpu10I CCTNAGC 1 cut(s) 353
Bpu1102I GCTNAGC 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 260
Bse1I ACTGG 1 cut(s) 397
BseDI CCNNGG 1 cut(s) 260
BseGI GGATG 1 cut(s) 256
BseMII CTCAG 3 cut(s) 116, 317, 367
BseNI ACTGG 1 cut(s) 397
Bsh1236I CGCG 1 cut(s) 29
BshFI GGCC 1 cut(s) 332
BshNI GGYRCC 2 cut(s) 226, 445
BsiHKAI GWGCWC 3 cut(s) 131, 209, 250
BsiHKCI CYCGRG 2 cut(s) 261, 470
BsiSI CCGG 1 cut(s) 413
BsmI GAATGC 1 cut(s) 163
BsnI GGCC 1 cut(s) 332
BsoBI CYCGRG 2 cut(s) 261, 470
Bsp1286I GDGCHC 3 cut(s) 131, 209, 250
Bsp143I GATC 2 cut(s) 4, 373
Bsp1720I GCTNAGC 1 cut(s) 125
BspACI CCGC 1 cut(s) 161
BspANI GGCC 1 cut(s) 332
BspCNI CTCAG 3 cut(s) 117, 316, 366
BspFNI CGCG 1 cut(s) 29
BspLI GGNNCC 3 cut(s) 6, 228, 447
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 83
BspT107I GGYRCC 2 cut(s) 226, 445
BsrI ACTGG 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 260
BssMI GATC 2 cut(s) 4, 373
BssNI GRCGYC 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 446
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 4 cut(s) 125, 303, 311, 353
BstF5I GGATG 1 cut(s) 256
BstFNI CGCG 1 cut(s) 29
BstH2I RGCGCY 1 cut(s) 449
BstHHI GCGC 2 cut(s) 31, 448
BstKTI GATC 2 cut(s) 7, 376
BstMBI GATC 2 cut(s) 4, 373
BstMWI GCNNNNNNNGC 2 cut(s) 307, 338
BstUI CGCG 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 415
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 1 cut(s) 332
BtsCI GGATG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 339
CaiI CAGNNNCTG 1 cut(s) 382
CfoI GCGC 2 cut(s) 31, 448
Cfr13I GGNCC 1 cut(s) 158
CviAII CATG 1 cut(s) 409
DdeI CTNAG 4 cut(s) 125, 303, 311, 353
DinI GGCGCC 1 cut(s) 447
DpnI GATC 2 cut(s) 6, 375
DpnII GATC 2 cut(s) 4, 373
DraIII CACNNNGTG 1 cut(s) 298
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 3 cut(s) 129, 207, 248
Eco24I GRGCYC 3 cut(s) 131, 209, 250
Eco47I GGWCC 1 cut(s) 158
Eco53kI GAGCTC 3 cut(s) 129, 207, 248
Eco88I CYCGRG 2 cut(s) 261, 470
EcoICRI GAGCTC 3 cut(s) 129, 207, 248
EcoT38I GRGCYC 3 cut(s) 131, 209, 250
EgeI GGCGCC 1 cut(s) 447
EheI GGCGCC 1 cut(s) 447
FaeI CATG 1 cut(s) 412
FaiI YATR 5 cut(s) 15, 98, 362, 401, 410
FatI CATG 1 cut(s) 408
FbaI TGATCA 1 cut(s) 373
FokI GGATG 1 cut(s) 243
FriOI GRGCYC 3 cut(s) 131, 209, 250
GlaI GCGC 2 cut(s) 30, 447
HaeII RGCGCY 1 cut(s) 449
HaeIII GGCC 1 cut(s) 332
HapII CCGG 1 cut(s) 413
HhaI GCGC 2 cut(s) 31, 448
Hin1I GRCGYC 1 cut(s) 446
Hin1II CATG 1 cut(s) 412
Hin6I GCGC 2 cut(s) 29, 446
HinP1I GCGC 2 cut(s) 29, 446
HindIII AAGCTT 1 cut(s) 232
HinfI GANTC 3 cut(s) 41, 181, 346
HpaII CCGG 1 cut(s) 413
HphI GGTGA 1 cut(s) 383
Hpy188I TCNGA 2 cut(s) 111, 306
Hpy188III TCNNGA 3 cut(s) 173, 355, 383
HpyCH4V TGCA 2 cut(s) 152, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 307, 338
HpyF3I CTNAG 4 cut(s) 125, 303, 311, 353
Hsp92I GRCGYC 1 cut(s) 446
Hsp92II CATG 1 cut(s) 412
HspAI GCGC 2 cut(s) 29, 446
KasI GGCGCC 1 cut(s) 445
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 4, 373
LguI GCTCTTC 1 cut(s) 83
LmnI GCTCC 3 cut(s) 238, 245, 322
LpnPI CCDG 9 cut(s) 45, 54, 304, 340, 351, 368, 378, 426, 462
MaeIII GTNAC 2 cut(s) 211, 388
MalI GATC 2 cut(s) 6, 375
MboI GATC 2 cut(s) 4, 373
MboII GAAGA 7 cut(s) 91, 94, 97, 100, 289, 415, 453
MfeI CAATTG 1 cut(s) 153
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 3 cut(s) 131, 209, 250
MluCI AATT 4 cut(s) 10, 46, 153, 416
Mly113I GGCGCC 1 cut(s) 446
MlyI GAGTC 2 cut(s) 50, 340
MmeI TCCRAC 1 cut(s) 89
MnlI CCTC 6 cut(s) 270, 279, 300, 312, 390, 474
MseI TTAA 1 cut(s) 186
MspI CCGG 1 cut(s) 413
MunI CAATTG 1 cut(s) 153
Mva1269I GAATGC 1 cut(s) 163
MvnI CGCG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 307, 338
NarI GGCGCC 1 cut(s) 446
NdeII GATC 2 cut(s) 4, 373
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 3 cut(s) 6, 228, 447
NmuCI GTSAC 2 cut(s) 211, 388
PciSI GCTCTTC 1 cut(s) 83
PctI GAATGC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 181
PleI GAGTC 2 cut(s) 49, 340
PluTI GGCGCC 1 cut(s) 449
PpsI GAGTC 2 cut(s) 49, 340
Psp124BI GAGCTC 3 cut(s) 131, 209, 250
PspN4I GGNNCC 3 cut(s) 6, 228, 447
PspPI GGNCC 1 cut(s) 158
PstNI CAGNNNCTG 1 cut(s) 382
PsuI RGATCY 1 cut(s) 4
SacI GAGCTC 3 cut(s) 131, 209, 250
SapI GCTCTTC 1 cut(s) 83
SaqAI TTAA 1 cut(s) 186
Sau3AI GATC 2 cut(s) 4, 373
Sau96I GGNCC 1 cut(s) 158
SchI GAGTC 2 cut(s) 50, 340
SduI GDGCHC 3 cut(s) 131, 209, 250
SetI ASST 9 cut(s) 131, 209, 236, 243, 250, 290, 327, 477, 485
SfoI GGCGCC 1 cut(s) 447
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 272
SmoI CTYRAG 1 cut(s) 272
Sse9I AATT 4 cut(s) 10, 46, 153, 416
SsiI CCGC 1 cut(s) 161
SspDI GGCGCC 1 cut(s) 445
SstI GAGCTC 3 cut(s) 131, 209, 250
TaqI TCGA 2 cut(s) 50, 479
TasI AATT 4 cut(s) 10, 46, 153, 416
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 1 cut(s) 397
TseFI GTSAC 2 cut(s) 211, 388
Tsp45I GTSAC 2 cut(s) 211, 388
TspDTI ATGAA 1 cut(s) 397
TspRI CASTG 1 cut(s) 397
VpaK11BI GGWCC 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.