Rh2DG573100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0015675
Physical Location & Seq
Forward (+)
80315145 .. 80317150
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG573100.1

Sequence Viewer

Length: 372 bp
ATGGCTAGAGTTGGTCTGGTTTGCCTAGTTCTTCTAGCTGGGATCCTTGTAGTCCAGGCAATGGCTGAAAAATCTGAGCTGAACCCAACTGAGGCTAAGCCCCAAAATCGGGTTTTAGCAGCACATTCAGATTCAGATTCAGGTTCAGGTTCAGATCAGAGTAGTGTTTCTGTTGCTGAAGAGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGCCCATCTATCAGAAAGTTGGGGTCCTCAAAGCATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTTATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCTGTCTTTTGCTACATCAGAGTCACCAGAAAAAGGGGAGGTGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

12.79

Weight (kDa)

6.9

Isoelectric Point (pI)

43.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43890
malus_domestica MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis pycom09g02570 pycom17g08680
rosa_chinensis RchiOBHm_Chr2g0160641
rosa_laevigata RLG00000021232
rosa_multiflora Rmu_sc0000674.1_g000030
rosa_roxburghii Rroxscaffold_2G00089530
rosa_rugosa Rorug02G0484700
rosa_samantha Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana Rw2G045530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AclWI GGATC 2 cut(s) 37, 50
AcuI CTGAAG 2 cut(s) 198, 237
AfiI CCNNNNNNNGG 5 cut(s) 61, 91, 108, 109, 354
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 3 cut(s) 38, 79, 323
AluI AGCT 3 cut(s) 38, 79, 323
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 2 cut(s) 37, 50
AoxI GGCC 1 cut(s) 220
ApeKI GCWGC 2 cut(s) 119, 320
AspS9I GGNCC 2 cut(s) 221, 243
AsuHPI GGTGA 2 cut(s) 248, 337
AvaII GGWCC 1 cut(s) 243
BamHI GGATCC 1 cut(s) 42
BbvI GCAGC 2 cut(s) 131, 332
BccI CCATC 2 cut(s) 193, 232
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 3 cut(s) 6, 26, 35
BisI GCNGC 2 cut(s) 120, 321
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 121, 322
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 243
BmgT120I GGNCC 2 cut(s) 221, 243
BmiI GGNNCC 2 cut(s) 44, 244
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 262
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 192
Bsc4I CCNNNNNNNGG 5 cut(s) 61, 91, 108, 109, 354
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 56
BseLI CCNNNNNNNGG 5 cut(s) 61, 91, 108, 109, 354
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 66, 81
BseRI GAGGAG 1 cut(s) 215
BseXI GCAGC 2 cut(s) 131, 332
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 1 cut(s) 222
BslI CCNNNNNNNGG 5 cut(s) 61, 91, 108, 109, 354
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 222
Bsp143I GATC 2 cut(s) 42, 154
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 222
BspCNI CTCAG 2 cut(s) 67, 82
BspLI GGNNCC 2 cut(s) 44, 244
BspPI GGATC 2 cut(s) 37, 50
BspQI GCTCTTC 1 cut(s) 174
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 2 cut(s) 42, 154
Bst2UI CCWGG 1 cut(s) 56
Bst6I CTCTTC 1 cut(s) 174
BstDEI CTNAG 3 cut(s) 75, 90, 96
BstKTI GATC 2 cut(s) 45, 157
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 2 cut(s) 42, 154
BstMWI GCNNNNNNNGC 1 cut(s) 317
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 131, 332
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 1 cut(s) 222
BtsI GCAGTG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 306
Cfr13I GGNCC 2 cut(s) 221, 243
DdeI CTNAG 3 cut(s) 75, 90, 96
DpnI GATC 2 cut(s) 44, 156
DpnII GATC 2 cut(s) 42, 154
Eam1104I CTCTTC 1 cut(s) 174
EarI CTCTTC 1 cut(s) 174
Eco47I GGWCC 1 cut(s) 243
Eco57I CTGAAG 2 cut(s) 198, 237
EcoO109I RGGNCCY 1 cut(s) 243
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 2 cut(s) 192, 197
Fnu4HI GCNGC 2 cut(s) 120, 321
Fsp4HI GCNGC 2 cut(s) 120, 321
FspBI CTAG 3 cut(s) 6, 26, 35
GluI GCNGC 2 cut(s) 120, 321
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 1 cut(s) 222
HinfI GANTC 4 cut(s) 131, 137, 203, 342
HphI GGTGA 2 cut(s) 248, 337
Hpy188I TCNGA 7 cut(s) 76, 130, 136, 154, 159, 233, 341
HpyAV CCTTC 1 cut(s) 212
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 317
HpyF3I CTNAG 3 cut(s) 75, 90, 96
Kzo9I GATC 2 cut(s) 42, 154
LguI GCTCTTC 1 cut(s) 174
LpnPI CCDG 8 cut(s) 2, 24, 41, 68, 126, 132, 261, 361
Lsp1109I GCAGC 2 cut(s) 131, 332
LweI GCATC 1 cut(s) 262
MaeI CTAG 3 cut(s) 6, 26, 35
MaeIII GTNAC 2 cut(s) 304, 343
MalI GATC 2 cut(s) 44, 156
MboI GATC 2 cut(s) 42, 154
MboII GAAGA 2 cut(s) 23, 191
MflI RGATCY 1 cut(s) 42
MlyI GAGTC 2 cut(s) 212, 351
MnlI CCTC 5 cut(s) 85, 193, 256, 275, 353
MseI TTAA 1 cut(s) 370
MspA1I CMGCKG 1 cut(s) 323
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 317
NdeII GATC 2 cut(s) 42, 154
NlaIV GGNNCC 2 cut(s) 44, 244
NmuCI GTSAC 2 cut(s) 304, 343
PciSI GCTCTTC 1 cut(s) 174
PfeI GAWTC 2 cut(s) 131, 137
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 121, 322
PleI GAGTC 2 cut(s) 211, 350
PpsI GAGTC 2 cut(s) 211, 350
PpuMI RGGWCCY 1 cut(s) 243
Psp5II RGGWCCY 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 54
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 2 cut(s) 44, 244
PspPI GGNCC 2 cut(s) 221, 243
PspPPI RGGWCCY 1 cut(s) 243
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 174
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 2 cut(s) 120, 321
Sau3AI GATC 2 cut(s) 42, 154
Sau96I GGNCC 2 cut(s) 221, 243
SchI GAGTC 2 cut(s) 212, 351
ScrFI CCNGG 1 cut(s) 56
SetI ASST 7 cut(s) 40, 81, 145, 151, 286, 325, 364
SfaNI GCATC 1 cut(s) 262
SinI GGWCC 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 207
SmoI CTYRAG 1 cut(s) 207
SspMI CTAG 3 cut(s) 6, 26, 35
StyD4I CCNGG 1 cut(s) 54
TfiI GAWTC 2 cut(s) 131, 137
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TscAI CASTG 1 cut(s) 313
TseFI GTSAC 2 cut(s) 304, 343
TseI GCWGC 2 cut(s) 119, 320
Tsp45I GTSAC 2 cut(s) 304, 343
TspRI CASTG 1 cut(s) 313
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 243
XspI CTAG 3 cut(s) 6, 26, 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.