Prupe.3G223500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0015675
Physical Location & Seq
Forward (+)
22350766 .. 22352989
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G223500.2

Sequence Viewer

Length: 363 bp
ATGGCTAGACTTGGTCTGATTTGCTTAGTTCTAGCTGGGTTCATGGTGCTTCAAGCCACCATGGCTGATAAATCCCGGGATTTGGAGCTGAATCCATTTGAGGAAGTGAAGTTCCAAGATGGAGTTTTTGTCAGAGAAGCAGAACACTCTGTTTCTGTTGCTGCAGAGCCATCATCTGAGAGTATGCAGGAAGCCCAAGGGGCTGAAGCTCCAACTAGCAGGCGTTTGGGACCAGGAAAGCATCACTCCTCTGATAAGTCTGTGGCTGGAGGAGGTGTCATTATTGGTGGCCTCGTCACTACCATTTTTGCAGCTGTTTTCTGCTACATCAGGGTTACTAGAAGAAGGGGTGGTGTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.81

Weight (kDa)

6.9

Isoelectric Point (pI)

49.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43890
malus_domestica MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis pycom09g02570 pycom17g08680
rosa_chinensis RchiOBHm_Chr2g0160641
rosa_laevigata RLG00000021232
rosa_multiflora Rmu_sc0000674.1_g000030
rosa_roxburghii Rroxscaffold_2G00089530
rosa_rugosa Rorug02G0484700
rosa_samantha Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana Rw2G045530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 225
AfiI CCNNNNNNNGG 1 cut(s) 82
AgsI TTSAA 1 cut(s) 53
AjnI CCWGG 1 cut(s) 232
AloI GAACNNNNNNTCC 2 cut(s) 95, 127
AluBI AGCT 4 cut(s) 35, 88, 209, 314
AluI AGCT 4 cut(s) 35, 88, 209, 314
Ama87I CYCGRG 1 cut(s) 75
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 161, 311
AspS9I GGNCC 1 cut(s) 230
AsuC2I CCSGG 2 cut(s) 76, 77
AvaI CYCGRG 1 cut(s) 75
AvaII GGWCC 1 cut(s) 230
BbvI GCAGC 2 cut(s) 148, 323
BccI CCATC 2 cut(s) 113, 178
BciT130I CCWGG 1 cut(s) 234
BcnI CCSGG 2 cut(s) 76, 77
BfaI CTAG 4 cut(s) 6, 32, 216, 339
BfmI CTRYAG 1 cut(s) 162
BglI GCCNNNNNGGC 2 cut(s) 62, 200
BisI GCNGC 2 cut(s) 162, 312
BlsI GCNGC 2 cut(s) 163, 313
Bme1390I CCNGG 3 cut(s) 76, 77, 234
Bme18I GGWCC 1 cut(s) 230
BmeT110I CYCGRG 1 cut(s) 75
BmgT120I GGNCC 1 cut(s) 230
BmiI GGNNCC 1 cut(s) 231
BmrFI CCNGG 3 cut(s) 76, 77, 234
BmsI GCATC 1 cut(s) 250
BpmI CTGGAG 1 cut(s) 288
BpuMI CCSGG 2 cut(s) 76, 77
BsaJI CCNNGG 3 cut(s) 60, 75, 196
BsaXI ACNNNNNCTCC 4 cut(s) 114, 144, 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 3 cut(s) 60, 75, 196
BseLI CCNNNNNNNGG 1 cut(s) 82
BseMII CTCAG 1 cut(s) 168
BseRI GAGGAG 2 cut(s) 238, 285
BseXI GCAGC 2 cut(s) 148, 323
BseYI CCCAGC 1 cut(s) 35
BshFI GGCC 1 cut(s) 291
BsiHKCI CYCGRG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 76
BslFI GGGAC 1 cut(s) 243
BslI CCNNNNNNNGG 1 cut(s) 82
BsmFI GGGAC 1 cut(s) 243
BsnI GGCC 1 cut(s) 291
BsoBI CYCGRG 1 cut(s) 75
Bsp19I CCATGG 1 cut(s) 60
BspANI GGCC 1 cut(s) 291
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 231
BspMAI CTGCAG 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 60, 75, 196
BssT1I CCWWGG 2 cut(s) 60, 196
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 1 cut(s) 221
BstDEI CTNAG 2 cut(s) 25, 177
BstDSI CCRYGG 1 cut(s) 60
BstMWI GCNNNNNNNGC 2 cut(s) 62, 200
BstNI CCWGG 1 cut(s) 234
BstSCI CCNGG 3 cut(s) 74, 75, 232
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 148, 323
BsuRI GGCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 221
Cfr13I GGNCC 1 cut(s) 230
Cfr9I CCCGGG 1 cut(s) 75
CviAII CATG 2 cut(s) 43, 61
DdeI CTNAG 2 cut(s) 25, 177
Eco130I CCWWGG 2 cut(s) 60, 196
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 2 cut(s) 60, 196
ErhI CCWWGG 2 cut(s) 60, 196
FaeI CATG 2 cut(s) 46, 64
FaiI YATR 3 cut(s) 44, 62, 185
FaqI GGGAC 1 cut(s) 243
FatI CATG 2 cut(s) 42, 60
Fnu4HI GCNGC 2 cut(s) 162, 312
Fsp4HI GCNGC 2 cut(s) 162, 312
FspBI CTAG 4 cut(s) 6, 32, 216, 339
GluI GCNGC 2 cut(s) 162, 312
GsaI CCCAGC 1 cut(s) 39
GsuI CTGGAG 1 cut(s) 288
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 76
Hin1II CATG 2 cut(s) 46, 64
HinfI GANTC 1 cut(s) 91
HpaII CCGG 1 cut(s) 76
Hpy188I TCNGA 4 cut(s) 18, 134, 178, 253
HpyAV CCTTC 1 cut(s) 339
HpyCH4V TGCA 3 cut(s) 164, 187, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 200
HpyF3I CTNAG 2 cut(s) 25, 177
Hsp92II CATG 2 cut(s) 46, 64
LmnI GCTCC 2 cut(s) 85, 214
LpnPI CCDG 8 cut(s) 21, 89, 173, 205, 219, 246, 252, 316
Lsp1109I GCAGC 2 cut(s) 148, 323
LweI GCATC 1 cut(s) 250
MaeI CTAG 4 cut(s) 6, 32, 216, 339
MaeIII GTNAC 2 cut(s) 295, 334
MboII GAAGA 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 236
MnlI CCTC 5 cut(s) 94, 259, 263, 266, 302
MseI TTAA 1 cut(s) 361
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 1 cut(s) 76
MspR9I CCNGG 3 cut(s) 76, 77, 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 62, 200
NciI CCSGG 2 cut(s) 76, 77
NcoI CCATGG 1 cut(s) 60
NlaIII CATG 2 cut(s) 46, 64
NlaIV GGNNCC 1 cut(s) 231
NmuCI GTSAC 1 cut(s) 295
PfeI GAWTC 1 cut(s) 91
PflFI GACNNNGTC 1 cut(s) 12
PkrI GCNGC 2 cut(s) 163, 313
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 35
PspGI CCWGG 1 cut(s) 232
PspN4I GGNNCC 1 cut(s) 231
PspPI GGNCC 1 cut(s) 230
PstI CTGCAG 1 cut(s) 166
PsyI GACNNNGTC 1 cut(s) 12
PvuII CAGCTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 2 cut(s) 162, 312
Sau96I GGNCC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 76, 77, 234
SetI ASST 5 cut(s) 37, 90, 211, 277, 316
SfaNI GCATC 1 cut(s) 250
SfcI CTRYAG 1 cut(s) 162
SinI GGWCC 1 cut(s) 230
SmaI CCCGGG 1 cut(s) 77
SspMI CTAG 4 cut(s) 6, 32, 216, 339
StyD4I CCNGG 3 cut(s) 74, 75, 232
StyI CCWWGG 2 cut(s) 60, 196
TfiI GAWTC 1 cut(s) 91
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TseFI GTSAC 1 cut(s) 295
TseI GCWGC 2 cut(s) 161, 311
Tsp45I GTSAC 1 cut(s) 295
TspDTI ATGAA 2 cut(s) 31, 347
TspMI CCCGGG 1 cut(s) 75
Tth111I GACNNNGTC 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 230
XmaI CCCGGG 1 cut(s) 75
XspI CTAG 4 cut(s) 6, 32, 216, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.