RLG00000021232

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0015675
Physical Location & Seq
Forward (+)
73140264 .. 73140641
378 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021232

Sequence Viewer

Length: 378 bp
ATGGCTAGAGTTGGTCTGGTTGGCCTAGTTCTTCTGGCTGGGATCCTTGTGGTCCAGGCAATGGCTGAAAAATCTGAGCTGAACCCAACTGAGGCTAAGCCCCAAAATGGGGTTTTAGCAGCACATTCAGATTCAGATTCTGGTTCAGGTTCAGGTTCTGATCAGAGTAGTGTTTCTGTTGCTGAAGTGCCATCTCATAGTATGGAGGAGTCTCAAGTGGCTGAAGGCCCATCTATCAGAAGGTTGGGGCCCTCAAAGCATCACCAAGATAAGTCTGTTGCTGGTGGAGGTGTTATTATTGGTGGGCTTGTCACTGCCATTTTTGCAGCTGTCTTTTGCTACATCAGGGTCACCAGAAAAAGGGGAGGTGTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

12.8

Weight (kDa)

6.9

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015675)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g43890
malus_domestica MD09G1102100.v1.1 MD09G1127500.v1.1
prunus_persica Prupe.3G223500_v2.0.a1 Prupe.3G223500_v2.0.a1
pyrus_communis pycom09g02570 pycom17g08680
rosa_chinensis RchiOBHm_Chr2g0160641
rosa_laevigata RLG00000021232
rosa_multiflora Rmu_sc0000674.1_g000030
rosa_roxburghii Rroxscaffold_2G00089530
rosa_rugosa Rorug02G0484700
rosa_samantha Rh2AG549700 Rh2BG564100 Rh2DG573100
rosa_wichuraiana Rw2G045530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 61
AclWI GGATC 2 cut(s) 37, 50
AcuI CTGAAG 2 cut(s) 204, 243
AfiI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 360
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 2 cut(s) 79, 329
AluI AGCT 2 cut(s) 79, 329
Alw26I GTCTC 1 cut(s) 216
AlwI GGATC 2 cut(s) 37, 50
AlwNI CAGNNNCTG 2 cut(s) 140, 158
AoxI GGCC 3 cut(s) 22, 226, 248
ApaI GGGCCC 1 cut(s) 252
ApeKI GCWGC 2 cut(s) 119, 326
AspS9I GGNCC 4 cut(s) 52, 227, 248, 249
AsuHPI GGTGA 2 cut(s) 254, 343
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 252
BamHI GGATCC 1 cut(s) 42
BanII GRGCYC 1 cut(s) 252
BbvI GCAGC 2 cut(s) 131, 338
BccI CCATC 2 cut(s) 199, 238
BciT130I CCWGG 1 cut(s) 56
BclI TGATCA 1 cut(s) 160
BcoDI GTCTC 1 cut(s) 216
BfaI CTAG 2 cut(s) 6, 26
BisI GCNGC 2 cut(s) 120, 327
BlpI GCTNAGC 1 cut(s) 96
BlsI GCNGC 2 cut(s) 121, 328
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 4 cut(s) 52, 227, 248, 249
BmiI GGNNCC 3 cut(s) 44, 249, 250
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 96
BpuEI CTTGAG 1 cut(s) 198
Bsc4I CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 360
Bse3DI GCAATG 1 cut(s) 66
BseBI CCWGG 1 cut(s) 56
BseLI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 360
BseMI GCAATG 1 cut(s) 66
BseMII CTCAG 2 cut(s) 66, 81
BseRI GAGGAG 1 cut(s) 221
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 2 cut(s) 131, 338
BseYI CCCAGC 1 cut(s) 38
BshFI GGCC 3 cut(s) 24, 228, 250
BslI CCNNNNNNNGG 6 cut(s) 61, 91, 107, 108, 109, 360
BsmAI GTCTC 1 cut(s) 216
BsnI GGCC 3 cut(s) 24, 228, 250
Bsp120I GGGCCC 1 cut(s) 248
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 42, 160
Bsp1720I GCTNAGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 24, 228, 250
BspCNI CTCAG 2 cut(s) 67, 82
BspLI GGNNCC 3 cut(s) 44, 249, 250
BspPI GGATC 2 cut(s) 37, 50
BsrDI GCAATG 1 cut(s) 66
BssMI GATC 2 cut(s) 42, 160
Bst2UI CCWGG 1 cut(s) 56
BstDEI CTNAG 3 cut(s) 75, 90, 96
BstEII GGTNACC 1 cut(s) 349
BstKTI GATC 2 cut(s) 45, 163
BstMAI GTCTC 1 cut(s) 216
BstMBI GATC 2 cut(s) 42, 160
BstMWI GCNNNNNNNGC 2 cut(s) 256, 323
BstNI CCWGG 1 cut(s) 56
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 54
BstSLI GKGCMC 1 cut(s) 252
BstV1I GCAGC 2 cut(s) 131, 338
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuRI GGCC 3 cut(s) 24, 228, 250
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 1 cut(s) 312
CaiI CAGNNNCTG 2 cut(s) 140, 158
Cfr13I GGNCC 4 cut(s) 52, 227, 248, 249
DdeI CTNAG 3 cut(s) 75, 90, 96
DpnI GATC 2 cut(s) 44, 162
DpnII GATC 2 cut(s) 42, 160
Eco24I GRGCYC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 52
Eco57I CTGAAG 2 cut(s) 204, 243
Eco91I GGTNACC 1 cut(s) 349
EcoO109I RGGNCCY 2 cut(s) 248, 249
EcoO65I GGTNACC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 252
FaiI YATR 2 cut(s) 198, 203
FbaI TGATCA 1 cut(s) 160
Fnu4HI GCNGC 2 cut(s) 120, 327
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 120, 327
FspBI CTAG 2 cut(s) 6, 26
GluI GCNGC 2 cut(s) 120, 327
GsaI CCCAGC 1 cut(s) 42
HaeIII GGCC 3 cut(s) 24, 228, 250
HinfI GANTC 3 cut(s) 131, 137, 209
HphI GGTGA 2 cut(s) 254, 343
Hpy188I TCNGA 6 cut(s) 76, 130, 136, 160, 165, 239
HpyAV CCTTC 2 cut(s) 218, 234
HpyCH4V TGCA 1 cut(s) 326
HpyF10VI GCNNNNNNNGC 2 cut(s) 256, 323
HpyF3I CTNAG 3 cut(s) 75, 90, 96
Ksp22I TGATCA 1 cut(s) 160
Kzo9I GATC 2 cut(s) 42, 160
Lsp1109I GCAGC 2 cut(s) 131, 338
LweI GCATC 1 cut(s) 268
MaeI CTAG 2 cut(s) 6, 26
MaeIII GTNAC 2 cut(s) 310, 349
MalI GATC 2 cut(s) 44, 162
MboI GATC 2 cut(s) 42, 160
MboII GAAGA 1 cut(s) 23
MflI RGATCY 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 252
MlyI GAGTC 1 cut(s) 218
MnlI CCTC 5 cut(s) 85, 199, 262, 281, 359
MseI TTAA 1 cut(s) 376
MspA1I CMGCKG 1 cut(s) 329
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 2 cut(s) 256, 323
NdeII GATC 2 cut(s) 42, 160
NlaIV GGNNCC 3 cut(s) 44, 249, 250
NmuCI GTSAC 2 cut(s) 310, 349
PfeI GAWTC 2 cut(s) 131, 137
PflMI CCANNNNNTGG 1 cut(s) 61
PkrI GCNGC 2 cut(s) 121, 328
PleI GAGTC 1 cut(s) 217
PpsI GAGTC 1 cut(s) 217
Psp6I CCWGG 1 cut(s) 54
PspEI GGTNACC 1 cut(s) 349
PspFI CCCAGC 1 cut(s) 38
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 3 cut(s) 44, 249, 250
PspOMI GGGCCC 1 cut(s) 248
PspPI GGNCC 4 cut(s) 52, 227, 248, 249
PstNI CAGNNNCTG 2 cut(s) 140, 158
PsuI RGATCY 1 cut(s) 42
PvuII CAGCTG 1 cut(s) 329
SaqAI TTAA 1 cut(s) 376
SatI GCNGC 2 cut(s) 120, 327
Sau3AI GATC 2 cut(s) 42, 160
Sau96I GGNCC 4 cut(s) 52, 227, 248, 249
SchI GAGTC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 252
SetI ASST 7 cut(s) 81, 151, 157, 245, 292, 331, 370
SfaNI GCATC 1 cut(s) 268
SinI GGWCC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 213
SmoI CTYRAG 1 cut(s) 213
SspMI CTAG 2 cut(s) 6, 26
StyD4I CCNGG 1 cut(s) 54
TfiI GAWTC 2 cut(s) 131, 137
Tru1I TTAA 1 cut(s) 376
Tru9I TTAA 1 cut(s) 376
TscAI CASTG 1 cut(s) 319
TseFI GTSAC 2 cut(s) 310, 349
TseI GCWGC 2 cut(s) 119, 326
Tsp45I GTSAC 2 cut(s) 310, 349
TspRI CASTG 1 cut(s) 319
Van91I CCANNNNNTGG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 52
XspI CTAG 2 cut(s) 6, 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.