FvH4_6g44330

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0016374
Physical Location & Seq
Reverse (-)
34151848 .. 34153254
1407 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44330.t1

Sequence Viewer

Length: 765 bp
ATGAAAAACGCTTCCAGAAGCAAGTTTCTGCTTTGCTTCCGACCAGTGGACGTCGACATGGAAATGGTCGTCGAGTCTAAACCTGCGCGCAGAACTAGAACCAAGCTGATCGAGAACACCAAGGCCGAAAAGACCAAGGTGGTGGACAAGGAGGAAGTCCAAGCTCCGTTGACCAAAACTATGTCTTTGGATAGAGAGTGCTCCATGATCAGTTCTCAGACCTCCAAACTGCCTCGGTCTCGTCACAGCCGGACGTTATCTAAGGCCATCAAAGCCGTCGTCTTTGAAACGATTCTGGCGAAGAAGGTTCGAGAAGGCAGAGCTTTCCGGCAAGACTCGTTCGGATCGAAACGGGGCTATTCTCTGAGTTTGGGGACTGATGAACTGATGACAACACCTTCAGAGACTAATTCTCATGAAGTCAGAGTCAATTTTGACTCGGAAAAACAGAGCACGAAGAATCAAGAAGACTCTGTTAAGAAATCGAAGAAGAACGAAAAGGGTTCATGTGAGCTCAATTCCGGAATGTATTTACTTCTCATAAGCCTCGGGATCACTGTTTTCTGGGGGAGGGTATTTGCTATTCTCTTCACATCAATCTGGCTCTACTTTTTCTCATGGCGTTGCGCAAATAGTAATCTCCGGCGGCCGGAAAACGTGAGAGAGTTGTCGGAGGCGGAGTCCAGGGAGCAGAAGAGGAGGGTCATAATGGAAGGGTTGATTGAACGGAACCACCATTTCCAGGGTAGTCAGAGATGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

29.39

Weight (kDa)

9.88

Isoelectric Point (pI)

55.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 54
Acc16I TGCGCA 1 cut(s) 628
Acc36I ACCTGC 1 cut(s) 91
AccI GTMKAC 1 cut(s) 54
AccII CGCG 1 cut(s) 88
AccIII TCCGGA 1 cut(s) 521
AciI CCGC 2 cut(s) 646, 677
AclWI GGATC 2 cut(s) 352, 560
AcoI YGGCCR 1 cut(s) 647
AcuI CTGAAG 1 cut(s) 384
AcyI GRCGYC 1 cut(s) 51
AfiI CCNNNNNNNGG 3 cut(s) 46, 649, 742
AgsI TTSAA 2 cut(s) 287, 725
AjnI CCWGG 2 cut(s) 683, 741
AluBI AGCT 4 cut(s) 106, 164, 323, 514
AluI AGCT 4 cut(s) 106, 164, 323, 514
Alw21I GWGCWC 3 cut(s) 203, 455, 516
Alw26I GTCTC 2 cut(s) 243, 398
AlwI GGATC 2 cut(s) 352, 560
Ama87I CYCGRG 1 cut(s) 548
Aor13HI TCCGGA 1 cut(s) 521
AoxI GGCC 3 cut(s) 123, 264, 647
ArsI GACNNNNNNTTYG 2 cut(s) 264, 296
Asp700I GAANNNNTTC 1 cut(s) 291
AspLEI GCGC 3 cut(s) 88, 90, 629
AvaI CYCGRG 1 cut(s) 548
BanII GRGCYC 1 cut(s) 516
BbsI GAAGAC 1 cut(s) 474
Bbv12I GWGCWC 3 cut(s) 203, 455, 516
BccI CCATC 2 cut(s) 275, 750
BceAI ACGGC 1 cut(s) 260
BciT130I CCWGG 2 cut(s) 685, 743
BclI TGATCA 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 243, 398
BfaI CTAG 1 cut(s) 96
BfuAI ACCTGC 1 cut(s) 91
BisI GCNGC 1 cut(s) 647
BlsI GCNGC 1 cut(s) 648
Bme1390I CCNGG 2 cut(s) 685, 743
BmeT110I CYCGRG 1 cut(s) 548
BmiI GGNNCC 1 cut(s) 731
BmrFI CCNGG 2 cut(s) 685, 743
BpiI GAAGAC 1 cut(s) 474
BsaHI GRCGYC 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 243
BsaJI CCNNGG 6 cut(s) 120, 135, 233, 547, 684, 742
BsaWI WCCGGW 1 cut(s) 521
BsaXI ACNNNNNCTCC 2 cut(s) 665, 695
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 649, 742
Bse1I ACTGG 1 cut(s) 44
BseAI TCCGGA 1 cut(s) 521
BseBI CCWGG 2 cut(s) 685, 743
BseDI CCNNGG 6 cut(s) 120, 135, 233, 547, 684, 742
BseLI CCNNNNNNNGG 3 cut(s) 46, 649, 742
BseMII CTCAG 2 cut(s) 230, 356
BseNI ACTGG 1 cut(s) 44
BsePI GCGCGC 1 cut(s) 86
BseRI GAGGAG 1 cut(s) 712
BseX3I CGGCCG 1 cut(s) 647
Bsh1236I CGCG 1 cut(s) 88
Bsh1285I CGRYCG 1 cut(s) 650
BshFI GGCC 3 cut(s) 125, 266, 649
BsiEI CGRYCG 1 cut(s) 650
BsiHKAI GWGCWC 3 cut(s) 203, 455, 516
BsiHKCI CYCGRG 1 cut(s) 548
BsiSI CCGG 5 cut(s) 250, 328, 522, 643, 650
BslFI GGGAC 1 cut(s) 388
BslI CCNNNNNNNGG 3 cut(s) 46, 649, 742
BsmAI GTCTC 2 cut(s) 243, 398
BsmFI GGGAC 1 cut(s) 388
BsnI GGCC 3 cut(s) 125, 266, 649
Bso31I GGTCTC 1 cut(s) 243
BsoBI CYCGRG 1 cut(s) 548
Bsp1286I GDGCHC 3 cut(s) 203, 455, 516
Bsp13I TCCGGA 1 cut(s) 521
Bsp143I GATC 4 cut(s) 108, 207, 344, 552
BspACI CCGC 2 cut(s) 646, 677
BspANI GGCC 3 cut(s) 125, 266, 649
BspCNI CTCAG 2 cut(s) 229, 357
BspEI TCCGGA 1 cut(s) 521
BspFNI CGCG 1 cut(s) 88
BspHI TCATGA 1 cut(s) 415
BspLI GGNNCC 1 cut(s) 731
BspMI ACCTGC 1 cut(s) 91
BspPI GGATC 2 cut(s) 352, 560
BspTNI GGTCTC 1 cut(s) 243
BsrI ACTGG 1 cut(s) 44
BssECI CCNNGG 6 cut(s) 120, 135, 233, 547, 684, 742
BssHII GCGCGC 1 cut(s) 86
BssMI GATC 4 cut(s) 108, 207, 344, 552
BssNI GRCGYC 1 cut(s) 51
BssT1I CCWWGG 2 cut(s) 120, 135
Bst2UI CCWGG 2 cut(s) 685, 743
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 593, 689
BstACI GRCGYC 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 3 cut(s) 216, 261, 365
BstFNI CGCG 1 cut(s) 88
BstHHI GCGC 3 cut(s) 88, 90, 629
BstKTI GATC 4 cut(s) 111, 210, 347, 555
BstMAI GTCTC 2 cut(s) 243, 398
BstMBI GATC 4 cut(s) 108, 207, 344, 552
BstMCI CGRYCG 1 cut(s) 650
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstNI CCWGG 2 cut(s) 685, 743
BstSCI CCNGG 2 cut(s) 683, 741
BstUI CGCG 1 cut(s) 88
BstV2I GAAGAC 1 cut(s) 474
BstXI CCANNNNNNTGG 1 cut(s) 142
BstZI CGGCCG 1 cut(s) 647
BsuRI GGCC 3 cut(s) 125, 266, 649
BtsIMutI CAGTG 2 cut(s) 51, 555
BveI ACCTGC 1 cut(s) 91
Cac8I GCNNGC 1 cut(s) 88
CciI TCATGA 1 cut(s) 415
CfoI GCGC 3 cut(s) 88, 90, 629
CviAII CATG 5 cut(s) 58, 205, 416, 507, 618
DdeI CTNAG 3 cut(s) 216, 261, 365
DpnI GATC 4 cut(s) 110, 209, 346, 554
DpnII GATC 4 cut(s) 108, 207, 344, 552
EaeI YGGCCR 1 cut(s) 647
EagI CGGCCG 1 cut(s) 647
Eam1104I CTCTTC 2 cut(s) 593, 689
EarI CTCTTC 2 cut(s) 593, 689
EciI GGCGGA 1 cut(s) 692
Ecl136II GAGCTC 1 cut(s) 514
EclXI CGGCCG 1 cut(s) 647
Eco130I CCWWGG 2 cut(s) 120, 135
Eco24I GRGCYC 1 cut(s) 516
Eco31I GGTCTC 1 cut(s) 243
Eco52I CGGCCG 1 cut(s) 647
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 384
Eco88I CYCGRG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 683, 741
EcoT14I CCWWGG 2 cut(s) 120, 135
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 120, 135
FaeI CATG 5 cut(s) 61, 208, 419, 510, 621
FaiI YATR 8 cut(s) 59, 182, 206, 417, 508, 542, 619, 707
FaqI GGGAC 1 cut(s) 388
FatI CATG 5 cut(s) 57, 204, 415, 506, 617
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 647
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 647
FspBI CTAG 1 cut(s) 96
FspI TGCGCA 1 cut(s) 628
GlaI GCGC 3 cut(s) 87, 89, 628
GluI GCNGC 1 cut(s) 647
HaeIII GGCC 3 cut(s) 125, 266, 649
HapII CCGG 5 cut(s) 250, 328, 522, 643, 650
HhaI GCGC 3 cut(s) 88, 90, 629
Hin1I GRCGYC 1 cut(s) 51
Hin1II CATG 5 cut(s) 61, 208, 419, 510, 621
Hin6I GCGC 3 cut(s) 86, 88, 627
HinP1I GCGC 3 cut(s) 86, 88, 627
HincII GTYRAC 2 cut(s) 55, 171
HindII GTYRAC 2 cut(s) 55, 171
HinfI GANTC 8 cut(s) 74, 292, 335, 426, 437, 460, 470, 680
HpaII CCGG 5 cut(s) 250, 328, 522, 643, 650
Hpy166II GTNNAC 4 cut(s) 49, 55, 145, 171
Hpy188I TCNGA 9 cut(s) 41, 219, 344, 366, 403, 425, 442, 673, 753
Hpy188III TCNNGA 7 cut(s) 15, 112, 311, 416, 464, 522, 550
Hpy8I GTNNAC 4 cut(s) 49, 55, 145, 171
Hpy99I CGWCG 3 cut(s) 56, 74, 281
HpyAV CCTTC 4 cut(s) 298, 308, 408, 707
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 3 cut(s) 51, 254, 657
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
HpyF3I CTNAG 3 cut(s) 216, 261, 365
HpySE526I ACGT 3 cut(s) 51, 254, 657
Hsp92I GRCGYC 1 cut(s) 51
Hsp92II CATG 5 cut(s) 61, 208, 419, 510, 621
HspAI GCGC 3 cut(s) 86, 88, 627
Kpn2I TCCGGA 1 cut(s) 521
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 4 cut(s) 108, 207, 344, 552
LmnI GCTCC 3 cut(s) 169, 206, 688
MaeI CTAG 1 cut(s) 96
MaeII ACGT 3 cut(s) 51, 254, 657
MaeIII GTNAC 1 cut(s) 242
MalI GATC 4 cut(s) 110, 209, 346, 554
MboI GATC 4 cut(s) 108, 207, 344, 552
MboII GAAGA 7 cut(s) 313, 469, 479, 499, 502, 580, 706
MhlI GDGCHC 3 cut(s) 203, 455, 516
MluCI AATT 3 cut(s) 409, 430, 517
MlyI GAGTC 6 cut(s) 83, 329, 431, 435, 464, 689
MmeI TCCRAC 2 cut(s) 64, 651
MnlI CCTC 8 cut(s) 145, 232, 243, 557, 564, 667, 690, 693
MroI TCCGGA 1 cut(s) 521
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 2 cut(s) 477, 763
MslI CAYNNNNRTG 1 cut(s) 62
MspI CCGG 5 cut(s) 250, 328, 522, 643, 650
MspR9I CCNGG 2 cut(s) 685, 743
MvaI CCWGG 2 cut(s) 685, 743
MvnI CGCG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 4 cut(s) 108, 207, 344, 552
NlaIII CATG 5 cut(s) 61, 208, 419, 510, 621
NlaIV GGNNCC 1 cut(s) 731
NmuCI GTSAC 1 cut(s) 242
NsbI TGCGCA 1 cut(s) 628
PagI TCATGA 1 cut(s) 415
PauI GCGCGC 1 cut(s) 86
PcsI WCGNNNNNNNCGW 2 cut(s) 296, 344
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 292, 460
PkrI GCNGC 1 cut(s) 648
PleI GAGTC 6 cut(s) 82, 329, 431, 434, 464, 688
PpsI GAGTC 6 cut(s) 82, 329, 431, 434, 464, 688
Psp124BI GAGCTC 1 cut(s) 516
Psp6I CCWGG 2 cut(s) 683, 741
PspGI CCWGG 2 cut(s) 683, 741
PspN4I GGNNCC 1 cut(s) 731
PteI GCGCGC 1 cut(s) 86
RseI CAYNNNNRTG 1 cut(s) 62
SacI GAGCTC 1 cut(s) 516
SalI GTCGAC 1 cut(s) 53
SaqAI TTAA 2 cut(s) 477, 763
SatI GCNGC 1 cut(s) 647
Sau3AI GATC 4 cut(s) 108, 207, 344, 552
SchI GAGTC 6 cut(s) 83, 329, 431, 435, 464, 689
ScrFI CCNGG 2 cut(s) 685, 743
SduI GDGCHC 3 cut(s) 203, 455, 516
SmiMI CAYNNNNRTG 1 cut(s) 62
Sse9I AATT 3 cut(s) 409, 430, 517
SsiI CCGC 2 cut(s) 646, 677
SspMI CTAG 1 cut(s) 96
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 2 cut(s) 683, 741
StyI CCWWGG 2 cut(s) 120, 135
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 3 cut(s) 54, 257, 660
TaqI TCGA 6 cut(s) 54, 72, 111, 310, 347, 485
TaqII GACCGA 1 cut(s) 225
TasI AATT 3 cut(s) 409, 430, 517
TauI GCSGC 1 cut(s) 649
TfiI GAWTC 2 cut(s) 292, 460
Tru1I TTAA 2 cut(s) 477, 763
Tru9I TTAA 2 cut(s) 477, 763
TscAI CASTG 2 cut(s) 51, 562
TseFI GTSAC 1 cut(s) 242
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 4 cut(s) 17, 396, 432, 495
TspGWI ACGGA 2 cut(s) 156, 742
TspRI CASTG 2 cut(s) 51, 562
XmiI GTMKAC 1 cut(s) 54
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 96
ZraI GACGTC 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.