MD09G1098800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0016374
Physical Location & Seq
Forward (+)
7211821 .. 7212761
941 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1098800.v1.1.491

Sequence Viewer

Length: 846 bp
ATGAAGAAAAACGTCTCGAAGTCAAAACCCAAGTTTTTGCACTGTTTCCGACCGGTGGACGTGGACATGGTGTTCGAGACCAAAGCTGTCCGGAGGAGACAAGTTCGGACTGTCGAAAACAAGGAGGACAAGAAGGCCGCTCTGGTGACGAAAACCATGTCTCTGGACAGAGGGTTTTCTTCTCCGGCGGATTCTGAGAACTCGAAAATGTCTCCTCGTCCGAGCCGAACTTTTTCGAAGGCGGTGAAAGCCGTGGTGTTCGAAACTATCCTGGCGAAGAAAGCTCGTGATCGGAAAGTATGCCGGCAGGACTCGTTCGGATCAAAGCGGTGTTTTTCGCTCAGAAGTGAGGCGTCTCTGAATTTGGGAGGCGATGAGTCGGTGAAGAAATTTGAAGAAACAATACCAAATTCTGAAATGTCATTACATTCTCGTTCTTCCAGTTCATCATCGTCCGCATTATCTTCTTCGAGTTCGGTTTCGGAATCCAAAAGGTTGTCCAAAACTTTCTCGGACCCGACGAAACAGAGCCTCCGGAATCCTCAAAACCCCGCGGCGAAACCAAAGAACACGGAAGTGAGGTGCTCCGGTTTCAACTCCGGAACATATTTTCTTCTCATCAGCCTTGCAGTGACGGTGTTTTGGGGCAAGGCGATTGCAATCCTTGTCTCATCGATTTGGCTCTACTTTTTTCCGTCGCGGAGTTCATGTAAAATATCGCCAGAAAATGTGAGGAGGTGGTCGGAGGCGGAGTGCAGGGACAATAACAAGAGGGTAATAATGGAAGGGTTGATTGAGAGGAAAAACCACCTCCACCACCACCAGCAGGGGGAGAGAGGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

282

Amino Acids

31.66

Weight (kDa)

10.12

Isoelectric Point (pI)

72.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 140
AccII CGCG 2 cut(s) 554, 700
AccIII TCCGGA 3 cut(s) 90, 534, 599
AciI CCGC 9 cut(s) 138, 188, 242, 328, 456, 552, 554, 700, 749
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 3 cut(s) 361, 389, 409
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 3 cut(s) 55, 826, 829
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 2 cut(s) 395, 595
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 270
AleI CACNNNNGTG 1 cut(s) 575
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 2 cut(s) 86, 284
AluI AGCT 2 cut(s) 86, 284
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 7 cut(s) 19, 71, 91, 165, 216, 360, 673
AlwI GGATC 1 cut(s) 328
Aor13HI TCCGGA 3 cut(s) 90, 534, 599
AoxI GGCC 1 cut(s) 135
ApoI RAATTY 3 cut(s) 361, 389, 409
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 143, 175
AsiGI ACCGGT 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 3 cut(s) 157, 256, 394
AsuII TTCGAA 2 cut(s) 236, 261
AvaII GGWCC 1 cut(s) 514
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 587
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 272
BcoDI GTCTC 7 cut(s) 19, 71, 91, 165, 216, 360, 673
BisI GCNGC 2 cut(s) 138, 555
BlsI GCNGC 2 cut(s) 139, 556
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 1 cut(s) 272
Bpu14I TTCGAA 2 cut(s) 236, 261
Bsa29I ATCGAT 1 cut(s) 674
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 2 cut(s) 252, 552
BsaWI WCCGGW 5 cut(s) 52, 90, 534, 587, 599
BsaXI ACNNNNNCTCC 6 cut(s) 516, 546, 694, 724, 737, 767
Bsc4I CCNNNNNNNGG 3 cut(s) 55, 826, 829
Bse118I RCCGGY 2 cut(s) 52, 303
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 659
BseAI TCCGGA 3 cut(s) 90, 534, 599
BseBI CCWGG 1 cut(s) 272
BseCI ATCGAT 1 cut(s) 674
BseDI CCNNGG 2 cut(s) 252, 552
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 3 cut(s) 55, 826, 829
BseMII CTCAG 2 cut(s) 186, 355
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 3 cut(s) 109, 204, 748
BsgI GTGCAG 1 cut(s) 775
Bsh1236I CGCG 2 cut(s) 554, 700
Bsh1285I CGRYCG 1 cut(s) 53
BshFI GGCC 1 cut(s) 137
BshTI ACCGGT 1 cut(s) 52
BshVI ATCGAT 1 cut(s) 674
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 7 cut(s) 53, 91, 185, 304, 535, 588, 600
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 3 cut(s) 55, 826, 829
BsmAI GTCTC 7 cut(s) 19, 71, 91, 165, 216, 360, 673
BsmBI CGTCTC 2 cut(s) 19, 360
BsmFI GGGAC 1 cut(s) 773
BsnI GGCC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 2 cut(s) 236, 261
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 3 cut(s) 90, 534, 599
Bsp143I GATC 2 cut(s) 289, 320
BspACI CCGC 9 cut(s) 138, 188, 242, 328, 456, 552, 554, 700, 749
BspANI GGCC 1 cut(s) 137
BspCNI CTCAG 2 cut(s) 187, 354
BspDI ATCGAT 1 cut(s) 674
BspEI TCCGGA 3 cut(s) 90, 534, 599
BspFNI CGCG 2 cut(s) 554, 700
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 328
BspT104I TTCGAA 2 cut(s) 236, 261
BspTNI GGTCTC 1 cut(s) 71
BsrBI CCGCTC 1 cut(s) 140
BsrFI RCCGGY 2 cut(s) 52, 303
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 2 cut(s) 52, 303
BssECI CCNNGG 2 cut(s) 252, 552
BssMI GATC 2 cut(s) 289, 320
BssNI GRCGYC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst2UI CCWGG 1 cut(s) 272
Bst4CI ACNGT 3 cut(s) 44, 112, 637
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 2 cut(s) 236, 261
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 195, 341
BstDSI CCRYGG 2 cut(s) 252, 552
BstFNI CGCG 2 cut(s) 554, 700
BstKTI GATC 2 cut(s) 292, 323
BstMAI GTCTC 7 cut(s) 19, 71, 91, 165, 216, 360, 673
BstMBI GATC 2 cut(s) 289, 320
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 248, 281
BstNI CCWGG 1 cut(s) 272
BstSCI CCNGG 1 cut(s) 270
BstUI CGCG 2 cut(s) 554, 700
BstXI CCANNNNNNTGG 1 cut(s) 163
Bsu15I ATCGAT 1 cut(s) 674
BsuRI GGCC 1 cut(s) 137
BsuTUI ATCGAT 1 cut(s) 674
BtgI CCRYGG 2 cut(s) 252, 552
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 40, 636
Cac8I GCNNGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 52, 303
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 555
ClaI ATCGAT 1 cut(s) 674
CseI GACGC 1 cut(s) 342
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 3 cut(s) 67, 157, 708
CviJI RGCY 8 cut(s) 86, 137, 225, 251, 284, 531, 624, 682
CviKI_1 RGCY 8 cut(s) 86, 137, 225, 251, 284, 531, 624, 682
DdeI CTNAG 2 cut(s) 195, 341
DpnI GATC 2 cut(s) 291, 322
DpnII GATC 2 cut(s) 289, 320
EciI GGCGGA 2 cut(s) 203, 764
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 270
Esp3I CGTCTC 2 cut(s) 19, 360
FaeI CATG 3 cut(s) 70, 160, 711
FaiI YATR 5 cut(s) 68, 158, 301, 607, 709
FaqI GGGAC 1 cut(s) 773
FatI CATG 3 cut(s) 66, 156, 707
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 138, 555
Fsp4HI GCNGC 2 cut(s) 138, 555
GluI GCNGC 2 cut(s) 138, 555
HaeIII GGCC 1 cut(s) 137
HapII CCGG 7 cut(s) 53, 91, 185, 304, 535, 588, 600
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 3 cut(s) 70, 160, 711
HinfI GANTC 5 cut(s) 191, 311, 377, 485, 538
HpaII CCGG 7 cut(s) 53, 91, 185, 304, 535, 588, 600
HphI GGTGA 3 cut(s) 157, 256, 394
Hpy166II GTNNAC 2 cut(s) 58, 64
Hpy188III TCNNGA 7 cut(s) 16, 76, 91, 164, 287, 535, 600
Hpy8I GTNNAC 2 cut(s) 58, 64
Hpy99I CGWCG 2 cut(s) 523, 700
HpyAV CCTTC 3 cut(s) 127, 232, 779
HpyCH4III ACNGT 3 cut(s) 44, 112, 637
HpyCH4IV ACGT 2 cut(s) 12, 60
HpyCH4V TGCA 4 cut(s) 40, 629, 659, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 281
HpyF3I CTNAG 2 cut(s) 195, 341
HpySE526I ACGT 2 cut(s) 12, 60
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 3 cut(s) 70, 160, 711
Kpn2I TCCGGA 3 cut(s) 90, 534, 599
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
KspI CCGCGG 1 cut(s) 555
Kzo9I GATC 2 cut(s) 289, 320
LmnI GCTCC 1 cut(s) 590
MaeII ACGT 2 cut(s) 12, 60
MaeIII GTNAC 2 cut(s) 145, 631
MalI GATC 2 cut(s) 291, 322
MbiI CCGCTC 1 cut(s) 140
MboI GATC 2 cut(s) 289, 320
MboII GAAGA 9 cut(s) 16, 171, 289, 397, 407, 429, 456, 459, 605
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 3 cut(s) 361, 389, 409
MlyI GAGTC 2 cut(s) 305, 386
MmeI TCCRAC 2 cut(s) 73, 723
MroI TCCGGA 3 cut(s) 90, 534, 599
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 232
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 7 cut(s) 53, 91, 185, 304, 535, 588, 600
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
MvnI CGCG 2 cut(s) 554, 700
MwoI GCNNNNNNNGC 2 cut(s) 248, 281
NaeI GCCGGC 1 cut(s) 305
NdeII GATC 2 cut(s) 289, 320
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 3 cut(s) 70, 160, 711
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 145, 631
NspV TTCGAA 2 cut(s) 236, 261
OliI CACNNNNGTG 1 cut(s) 575
PcsI WCGNNNNNNNCGW 2 cut(s) 223, 518
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 191, 485, 538
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 139, 556
PleI GAGTC 2 cut(s) 305, 385
PpsI GAGTC 2 cut(s) 305, 385
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 514
RseI CAYNNNNRTG 1 cut(s) 575
SacII CCGCGG 1 cut(s) 555
SatI GCNGC 2 cut(s) 138, 555
Sau3AI GATC 2 cut(s) 289, 320
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 305, 386
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 587
SetI ASST 8 cut(s) 15, 63, 88, 286, 497, 584, 740, 813
Sfr303I CCGCGG 1 cut(s) 555
SfuI TTCGAA 2 cut(s) 236, 261
SgrBI CCGCGG 1 cut(s) 555
SinI GGWCC 1 cut(s) 514
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 3 cut(s) 361, 389, 409
SsiI CCGC 9 cut(s) 138, 188, 242, 328, 456, 552, 554, 700, 749
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 3 cut(s) 44, 112, 637
TaiI ACGT 2 cut(s) 15, 63
TaqI TCGA 8 cut(s) 17, 75, 114, 203, 236, 261, 470, 674
TasI AATT 3 cut(s) 361, 389, 409
TauI GCSGC 2 cut(s) 140, 557
TfiI GAWTC 3 cut(s) 191, 485, 538
TscAI CASTG 2 cut(s) 47, 636
TseFI GTSAC 2 cut(s) 145, 631
Tsp45I GTSAC 2 cut(s) 145, 631
TspDTI ATGAA 3 cut(s) 17, 435, 696
TspGWI ACGGA 2 cut(s) 587, 684
TspRI CASTG 2 cut(s) 47, 636
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 3 cut(s) 361, 389, 409
XmnI GAANNNNTTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.