RLG00000021268

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0016374
Physical Location & Seq
Reverse (-)
73554168 .. 73555522
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021268

Sequence Viewer

Length: 825 bp
ATGAAAAACGGTTCCAGAAGCAAGTTTCTGCTTTGCTTCCGACCAGTGGTTGACATGGAAATGGTGGTCGAGTCTAAAGATATCGTCGTTGATCGTCCTACGCGCAGAAGTAGAACTAAGCCGATCGAGAACACCAAGGTCGAAAAGACCAAGGTGGTGGAGGTGAAGGAGGAGGAGGAGGTGAAAGTCCAAGCCCCGTTAACCAAAACCATGTCTTTGGATAGAGAGTGCTCCATGATCAGTTCTCAGAGCTCCAAGATGCCTCGGTCTCGTCACAATCGGACGTTTTCCCGGGTCATTAAAGCCGTGGTCTTTGAAACGATTCTGGCCAAGAAGGTTCGAGACGGCAGAGTTGTCCGGCAAGACTCGTTCGGATCGAAACGGAGCTATTCGATGAACAGAGGAAAGTCTGTGAGTTTGGAGACTGATGAATTGATGATCACACCTACAGACACTAATTCTCATGAAGTCAAAGTCAATTCTAGTTCGAAACCGGACTCGGCAAAACAGAGCACGAAGAATCAAGAAGACTCTCTTACGAAACCGAAGAAGAACGAAAAGGGTTCCTGTGAGCTCAATTCAGGAATGTATTTACTTCTTATCAGCCTCGGAATCACTGTTTTCTGGGGGAGGGTGTTTGCTATTCTCTTCACATCACTTTGGCTCTACTTTTTCACATGGAGTTGCCCAACTGGTTATCGCCGGCGGCCGGAAAACGTTAGAAAGTGGTCGGAGGCGGAGTCCAGGTATCAGAAGAGGAGGGTCATAATGGAAGGGTTGATTGAAAGAAACCACCATTTCCACAGTAGTCAGAGAGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

275

Amino Acids

31.81

Weight (kDa)

9.93

Isoelectric Point (pI)

60.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 103
AciI CCGC 2 cut(s) 706, 737
AclI AACGTT 1 cut(s) 717
AclWI GGATC 1 cut(s) 382
AcoI YGGCCR 2 cut(s) 327, 707
AfiI CCNNNNNNNGG 2 cut(s) 46, 709
AgsI TTSAA 2 cut(s) 317, 785
AjnI CCWGG 1 cut(s) 743
AluBI AGCT 3 cut(s) 252, 387, 574
AluI AGCT 3 cut(s) 252, 387, 574
Alw21I GWGCWC 4 cut(s) 233, 254, 515, 576
Alw26I GTCTC 3 cut(s) 273, 336, 416
AlwI GGATC 1 cut(s) 382
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 2 cut(s) 327, 707
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 2 cut(s) 292, 293
AsuHPI GGTGA 2 cut(s) 175, 193
AsuII TTCGAA 1 cut(s) 488
AvaI CYCGRG 1 cut(s) 291
BalI TGGCCA 1 cut(s) 329
BanII GRGCYC 2 cut(s) 254, 576
BbsI GAAGAC 1 cut(s) 534
Bbv12I GWGCWC 4 cut(s) 233, 254, 515, 576
BceAI ACGGC 2 cut(s) 290, 361
BciT130I CCWGG 1 cut(s) 745
BclI TGATCA 2 cut(s) 237, 438
BcnI CCSGG 2 cut(s) 292, 293
BcoDI GTCTC 3 cut(s) 273, 336, 416
BfaI CTAG 1 cut(s) 483
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 708
Bme1390I CCNGG 3 cut(s) 292, 293, 745
BmeT110I CYCGRG 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 13, 565
BmrFI CCNGG 3 cut(s) 292, 293, 745
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 488
BpuMI CCSGG 2 cut(s) 292, 293
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 6 cut(s) 135, 150, 263, 291, 306, 607
BsaWI WCCGGW 1 cut(s) 493
BsaXI ACNNNNNCTCC 4 cut(s) 725, 731, 755, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 709
Bse118I RCCGGY 1 cut(s) 702
Bse1I ACTGG 2 cut(s) 44, 697
BseBI CCWGG 1 cut(s) 745
BseDI CCNNGG 6 cut(s) 135, 150, 263, 291, 306, 607
BseLI CCNNNNNNNGG 2 cut(s) 46, 709
BseMII CTCAG 1 cut(s) 260
BseNI ACTGG 2 cut(s) 44, 697
BseRI GAGGAG 4 cut(s) 185, 188, 191, 772
BseX3I CGGCCG 1 cut(s) 707
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 2 cut(s) 126, 710
BshFI GGCC 2 cut(s) 329, 709
BsiEI CGRYCG 2 cut(s) 126, 710
BsiHKAI GWGCWC 4 cut(s) 233, 254, 515, 576
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 5 cut(s) 292, 358, 494, 703, 710
BslI CCNNNNNNNGG 2 cut(s) 46, 709
BsmAI GTCTC 3 cut(s) 273, 336, 416
BsmBI CGTCTC 1 cut(s) 336
BsnI GGCC 2 cut(s) 329, 709
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 291
Bsp119I TTCGAA 1 cut(s) 488
Bsp1286I GDGCHC 4 cut(s) 233, 254, 515, 576
Bsp143I GATC 5 cut(s) 91, 123, 237, 374, 438
BspACI CCGC 2 cut(s) 706, 737
BspANI GGCC 2 cut(s) 329, 709
BspCNI CTCAG 1 cut(s) 259
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 2 cut(s) 13, 565
BspPI GGATC 1 cut(s) 382
BspT104I TTCGAA 1 cut(s) 488
BspTNI GGTCTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 702
BsrI ACTGG 2 cut(s) 44, 697
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 6 cut(s) 135, 150, 263, 291, 306, 607
BssMI GATC 5 cut(s) 91, 123, 237, 374, 438
BssT1I CCWWGG 2 cut(s) 135, 150
Bst2UI CCWGG 1 cut(s) 745
Bst4CI ACNGT 3 cut(s) 11, 619, 806
Bst6I CTCTTC 2 cut(s) 653, 749
BstBI TTCGAA 1 cut(s) 488
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 2 cut(s) 117, 246
BstDSI CCRYGG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 94, 126, 240, 377, 441
BstMAI GTCTC 3 cut(s) 273, 336, 416
BstMBI GATC 5 cut(s) 91, 123, 237, 374, 438
BstMCI CGRYCG 2 cut(s) 126, 710
BstNI CCWGG 1 cut(s) 745
BstSCI CCNGG 3 cut(s) 290, 291, 743
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 534
BstXI CCANNNNNNTGG 2 cut(s) 157, 217
BstZI CGGCCG 1 cut(s) 707
BsuRI GGCC 2 cut(s) 329, 709
BtgI CCRYGG 1 cut(s) 306
BtsIMutI CAGTG 2 cut(s) 51, 615
Cac8I GCNNGC 1 cut(s) 704
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 702
Cfr9I CCCGGG 1 cut(s) 291
CviAII CATG 5 cut(s) 55, 211, 235, 464, 678
DdeI CTNAG 2 cut(s) 117, 246
DpnI GATC 5 cut(s) 93, 125, 239, 376, 440
DpnII GATC 5 cut(s) 91, 123, 237, 374, 438
EaeI YGGCCR 2 cut(s) 327, 707
EagI CGGCCG 1 cut(s) 707
Eam1104I CTCTTC 2 cut(s) 653, 749
EarI CTCTTC 2 cut(s) 653, 749
EciI GGCGGA 1 cut(s) 752
Ecl136II GAGCTC 2 cut(s) 252, 574
EclXI CGGCCG 1 cut(s) 707
Eco130I CCWWGG 2 cut(s) 135, 150
Eco24I GRGCYC 2 cut(s) 254, 576
Eco31I GGTCTC 1 cut(s) 273
Eco32I GATATC 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 707
Eco53kI GAGCTC 2 cut(s) 252, 574
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 2 cut(s) 252, 574
EcoRII CCWGG 1 cut(s) 743
EcoRV GATATC 1 cut(s) 82
EcoT14I CCWWGG 2 cut(s) 135, 150
EcoT38I GRGCYC 2 cut(s) 254, 576
ErhI CCWWGG 2 cut(s) 135, 150
Esp3I CGTCTC 1 cut(s) 336
FaeI CATG 5 cut(s) 58, 214, 238, 467, 681
FaiI YATR 6 cut(s) 56, 212, 236, 465, 679, 767
FalI AAGNNNNNCTT 2 cut(s) 519, 551
FatI CATG 5 cut(s) 54, 210, 234, 463, 677
FbaI TGATCA 2 cut(s) 237, 438
Fnu4HI GCNGC 1 cut(s) 707
FriOI GRGCYC 2 cut(s) 254, 576
Fsp4HI GCNGC 1 cut(s) 707
FspBI CTAG 1 cut(s) 483
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 707
HaeIII GGCC 2 cut(s) 329, 709
HapII CCGG 5 cut(s) 292, 358, 494, 703, 710
HhaI GCGC 1 cut(s) 105
Hin1II CATG 5 cut(s) 58, 214, 238, 467, 681
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 52, 201
HindII GTYRAC 2 cut(s) 52, 201
HinfI GANTC 8 cut(s) 71, 322, 365, 497, 520, 530, 612, 740
HpaI GTTAAC 1 cut(s) 201
HpaII CCGG 5 cut(s) 292, 358, 494, 703, 710
HphI GGTGA 2 cut(s) 175, 193
Hpy166II GTNNAC 2 cut(s) 52, 201
Hpy188I TCNGA 8 cut(s) 41, 249, 282, 374, 611, 733, 753, 813
Hpy188III TCNNGA 6 cut(s) 15, 127, 341, 464, 524, 582
Hpy8I GTNNAC 2 cut(s) 52, 201
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 3 cut(s) 160, 328, 767
HpyCH4III ACNGT 3 cut(s) 11, 619, 806
HpyCH4IV ACGT 2 cut(s) 284, 717
HpyF3I CTNAG 2 cut(s) 117, 246
HpySE526I ACGT 2 cut(s) 284, 717
Hsp92II CATG 5 cut(s) 58, 214, 238, 467, 681
HspAI GCGC 1 cut(s) 103
KroI GCCGGC 1 cut(s) 702
KroNI GCCGGC 1 cut(s) 704
Ksp22I TGATCA 2 cut(s) 237, 438
KspAI GTTAAC 1 cut(s) 201
Kzo9I GATC 5 cut(s) 91, 123, 237, 374, 438
LmnI GCTCC 3 cut(s) 236, 257, 384
LweI GCATC 1 cut(s) 249
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 284, 717
MaeIII GTNAC 1 cut(s) 272
MalI GATC 5 cut(s) 93, 125, 239, 376, 440
MboI GATC 5 cut(s) 91, 123, 237, 374, 438
MboII GAAGA 6 cut(s) 529, 539, 559, 562, 640, 766
MhlI GDGCHC 4 cut(s) 233, 254, 515, 576
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 4 cut(s) 431, 457, 478, 577
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 5 cut(s) 80, 359, 491, 524, 749
MmeI TCCRAC 2 cut(s) 64, 711
Mox20I TGGCCA 1 cut(s) 329
MreI CGCCGGCG 1 cut(s) 702
MroNI GCCGGC 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 329
MseI TTAA 3 cut(s) 200, 300, 823
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 5 cut(s) 292, 358, 494, 703, 710
MspR9I CCNGG 3 cut(s) 292, 293, 745
MvaI CCWGG 1 cut(s) 745
MvnI CGCG 1 cut(s) 103
NaeI GCCGGC 1 cut(s) 704
NciI CCSGG 2 cut(s) 292, 293
NdeII GATC 5 cut(s) 91, 123, 237, 374, 438
NgoMIV GCCGGC 1 cut(s) 702
NlaIII CATG 5 cut(s) 58, 214, 238, 467, 681
NlaIV GGNNCC 2 cut(s) 13, 565
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 272
NspV TTCGAA 1 cut(s) 488
PagI TCATGA 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 3 cut(s) 322, 520, 612
PkrI GCNGC 1 cut(s) 708
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 5 cut(s) 79, 359, 491, 524, 748
PpsI GAGTC 5 cut(s) 79, 359, 491, 524, 748
Psp124BI GAGCTC 2 cut(s) 254, 576
Psp1406I AACGTT 1 cut(s) 717
Psp6I CCWGG 1 cut(s) 743
PspGI CCWGG 1 cut(s) 743
PspN4I GGNNCC 2 cut(s) 13, 565
PvuI CGATCG 1 cut(s) 126
RseI CAYNNNNRTG 1 cut(s) 59
SacI GAGCTC 2 cut(s) 254, 576
SaqAI TTAA 3 cut(s) 200, 300, 823
SatI GCNGC 1 cut(s) 707
Sau3AI GATC 5 cut(s) 91, 123, 237, 374, 438
SchI GAGTC 5 cut(s) 80, 359, 491, 524, 749
ScrFI CCNGG 3 cut(s) 292, 293, 745
SduI GDGCHC 4 cut(s) 233, 254, 515, 576
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 1 cut(s) 488
SgrAI CRCCGGYG 1 cut(s) 702
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 59
Sse9I AATT 4 cut(s) 431, 457, 478, 577
SsiI CCGC 2 cut(s) 706, 737
SspMI CTAG 1 cut(s) 483
SstI GAGCTC 2 cut(s) 254, 576
StyD4I CCNGG 3 cut(s) 290, 291, 743
StyI CCWWGG 2 cut(s) 135, 150
TaaI ACNGT 3 cut(s) 11, 619, 806
TaiI ACGT 2 cut(s) 287, 720
TaqI TCGA 7 cut(s) 69, 126, 141, 340, 377, 392, 488
TaqII GACCGA 1 cut(s) 255
TasI AATT 4 cut(s) 431, 457, 478, 577
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 3 cut(s) 322, 520, 612
Tru1I TTAA 3 cut(s) 200, 300, 823
Tru9I TTAA 3 cut(s) 200, 300, 823
TscAI CASTG 2 cut(s) 51, 622
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 17, 410, 444, 480
TspGWI ACGGA 1 cut(s) 397
TspMI CCCGGG 1 cut(s) 291
TspRI CASTG 2 cut(s) 51, 622
XmaI CCCGGG 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.