Rh2AG553900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0016374
Physical Location & Seq
Reverse (-)
78446486 .. 78448077
1592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG553900.1

Sequence Viewer

Length: 825 bp
ATGAAAAACGGTTCCAGAAGCAAGTTTCTGCTTTGCTTCCGACCCGTGGTCGACATGGAAATGGTGGTCGAGTCTAAAGGTGTCGTCATTGATCGTCCTACGCGCAGAAGTAGAACTAAGCCGATCGAGAACACCAAGGTCGAAAAGACCAAGGCGGTGGAGGTGAAGGAGGAGGAGGAGGTGAAAGTCCAAGGCCCGTTAACCAAAACCATGTCTTTGGATAGAGAGTGCTCCATGATCAGTTCTCAGAGCTCCAAGATGCCTCGGTCTCGTCACAATCGGACGTTTTCCCGGGTCATCAAAGCCGTGGTCTTCGAAACGATTCTGGCCAAGAAGGTTCGGGACGGCAGAGTTGTCCGGCAAGACTCGTTCGGATCGAAACGGAGCTATTCGATGAACAGAGGAAAGTCTCTGAGTTTGGAGACTAATGAATTGATGATCACACCTACAGAAACTAATTCTCATGAAGTCAAAGTCAATTCTAGTTCGAATCCGGACTCGGCAAAACGGAGCACGAAGAATCAAGAAGACTCTGTTACGAAGCCGAAGAAGAACGAAAACTGTTCCTGTGAGCTCAATTCCGGAATGTATGTACTTCTTATCAGCCTCGGAATCACGGTTTTCTGGGGGAGGGTATTAGCTATTCTCTTCACATCACTTTGGCTCTACTTTTTCACATGGAGTTGCCCAACTAGTTATCGCCGGCGGCCGGAAAACGTTAGAAAGTGGTCGGAGGCGGAGTGCAGGGATCAGAAGAGGAGGGTCATAATGGAAGGGTTGATTGAAAGAAACCACCATTTCCACAGTAGTCAGAGAGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

274

Amino Acids

31.72

Weight (kDa)

9.9

Isoelectric Point (pI)

62.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 103
AccIII TCCGGA 2 cut(s) 493, 581
AciI CCGC 3 cut(s) 155, 706, 737
AclI AACGTT 1 cut(s) 717
AclWI GGATC 2 cut(s) 382, 756
AcoI YGGCCR 2 cut(s) 327, 707
AfaI GTAC 1 cut(s) 594
AfiI CCNNNNNNNGG 2 cut(s) 46, 709
AgsI TTSAA 1 cut(s) 785
AhdI GACNNNNNGTC 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 692
AluBI AGCT 4 cut(s) 252, 387, 574, 641
AluI AGCT 4 cut(s) 252, 387, 574, 641
Alw21I GWGCWC 4 cut(s) 233, 254, 515, 576
Alw26I GTCTC 3 cut(s) 273, 414, 416
AlwI GGATC 2 cut(s) 382, 756
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 2 cut(s) 493, 581
AoxI GGCC 3 cut(s) 193, 327, 707
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
Asp700I GAANNNNTTC 1 cut(s) 321
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 1 cut(s) 194
AsuC2I CCSGG 2 cut(s) 292, 293
AsuHPI GGTGA 2 cut(s) 175, 193
AsuII TTCGAA 2 cut(s) 315, 488
AvaI CYCGRG 1 cut(s) 291
BalI TGGCCA 1 cut(s) 329
BanII GRGCYC 2 cut(s) 254, 576
BbsI GAAGAC 2 cut(s) 304, 534
Bbv12I GWGCWC 4 cut(s) 233, 254, 515, 576
BceAI ACGGC 2 cut(s) 290, 361
BclI TGATCA 2 cut(s) 237, 438
BcnI CCSGG 2 cut(s) 292, 293
BcoDI GTCTC 3 cut(s) 273, 414, 416
BcuI ACTAGT 1 cut(s) 692
BfaI CTAG 2 cut(s) 483, 693
BfmI CTRYAG 1 cut(s) 447
BisI GCNGC 1 cut(s) 707
BlsI GCNGC 1 cut(s) 708
Bme1390I CCNGG 2 cut(s) 292, 293
BmeRI GACNNNNNGTC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 194
BmiI GGNNCC 1 cut(s) 13
BmrFI CCNGG 2 cut(s) 292, 293
BmsI GCATC 1 cut(s) 249
BpiI GAAGAC 2 cut(s) 304, 534
Bpu14I TTCGAA 2 cut(s) 315, 488
BpuMI CCSGG 2 cut(s) 292, 293
BsaI GGTCTC 1 cut(s) 273
BsaJI CCNNGG 8 cut(s) 45, 135, 150, 190, 263, 291, 306, 607
BsaWI WCCGGW 2 cut(s) 493, 581
BsaXI ACNNNNNCTCC 2 cut(s) 725, 755
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 709
Bse118I RCCGGY 1 cut(s) 702
BseAI TCCGGA 2 cut(s) 493, 581
BseDI CCNNGG 8 cut(s) 45, 135, 150, 190, 263, 291, 306, 607
BseLI CCNNNNNNNGG 2 cut(s) 46, 709
BseMII CTCAG 2 cut(s) 260, 404
BseRI GAGGAG 4 cut(s) 185, 188, 191, 772
BseX3I CGGCCG 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 763
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 2 cut(s) 126, 710
BshFI GGCC 3 cut(s) 195, 329, 709
BsiEI CGRYCG 2 cut(s) 126, 710
BsiHKAI GWGCWC 4 cut(s) 233, 254, 515, 576
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 6 cut(s) 292, 358, 494, 582, 703, 710
BslFI GGGAC 1 cut(s) 356
BslI CCNNNNNNNGG 2 cut(s) 46, 709
BsmAI GTCTC 3 cut(s) 273, 414, 416
BsmFI GGGAC 1 cut(s) 356
BsnI GGCC 3 cut(s) 195, 329, 709
Bso31I GGTCTC 1 cut(s) 273
BsoBI CYCGRG 1 cut(s) 291
Bsp119I TTCGAA 2 cut(s) 315, 488
Bsp1286I GDGCHC 4 cut(s) 233, 254, 515, 576
Bsp13I TCCGGA 2 cut(s) 493, 581
Bsp143I GATC 6 cut(s) 91, 123, 237, 374, 438, 748
BspACI CCGC 3 cut(s) 155, 706, 737
BspANI GGCC 3 cut(s) 195, 329, 709
BspCNI CTCAG 2 cut(s) 259, 405
BspEI TCCGGA 2 cut(s) 493, 581
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 463
BspLI GGNNCC 1 cut(s) 13
BspPI GGATC 2 cut(s) 382, 756
BspT104I TTCGAA 2 cut(s) 315, 488
BspTNI GGTCTC 1 cut(s) 273
BsrFI RCCGGY 1 cut(s) 702
BssAI RCCGGY 1 cut(s) 702
BssECI CCNNGG 8 cut(s) 45, 135, 150, 190, 263, 291, 306, 607
BssMI GATC 6 cut(s) 91, 123, 237, 374, 438, 748
BssT1I CCWWGG 3 cut(s) 135, 150, 190
Bst4CI ACNGT 4 cut(s) 11, 563, 619, 806
Bst6I CTCTTC 2 cut(s) 653, 749
BstBI TTCGAA 2 cut(s) 315, 488
BstC8I GCNNGC 1 cut(s) 704
BstDEI CTNAG 3 cut(s) 117, 246, 413
BstDSI CCRYGG 2 cut(s) 45, 306
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 6 cut(s) 94, 126, 240, 377, 441, 751
BstMAI GTCTC 3 cut(s) 273, 414, 416
BstMBI GATC 6 cut(s) 91, 123, 237, 374, 438, 748
BstMCI CGRYCG 2 cut(s) 126, 710
BstSCI CCNGG 2 cut(s) 290, 291
BstSFI CTRYAG 1 cut(s) 447
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 2 cut(s) 304, 534
BstXI CCANNNNNNTGG 2 cut(s) 157, 217
BstZI CGGCCG 1 cut(s) 707
BsuRI GGCC 3 cut(s) 195, 329, 709
BtgI CCRYGG 2 cut(s) 45, 306
Cac8I GCNNGC 1 cut(s) 704
CciI TCATGA 1 cut(s) 463
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 702
Cfr13I GGNCC 1 cut(s) 194
Cfr9I CCCGGG 1 cut(s) 291
Csp6I GTAC 1 cut(s) 593
CviAII CATG 5 cut(s) 55, 211, 235, 464, 678
CviQI GTAC 1 cut(s) 593
DdeI CTNAG 3 cut(s) 117, 246, 413
DpnI GATC 6 cut(s) 93, 125, 239, 376, 440, 750
DpnII GATC 6 cut(s) 91, 123, 237, 374, 438, 748
DriI GACNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 2 cut(s) 327, 707
EagI CGGCCG 1 cut(s) 707
Eam1104I CTCTTC 2 cut(s) 653, 749
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 2 cut(s) 653, 749
EciI GGCGGA 1 cut(s) 752
Ecl136II GAGCTC 2 cut(s) 252, 574
EclXI CGGCCG 1 cut(s) 707
Eco130I CCWWGG 3 cut(s) 135, 150, 190
Eco24I GRGCYC 2 cut(s) 254, 576
Eco31I GGTCTC 1 cut(s) 273
Eco52I CGGCCG 1 cut(s) 707
Eco53kI GAGCTC 2 cut(s) 252, 574
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 2 cut(s) 252, 574
EcoT14I CCWWGG 3 cut(s) 135, 150, 190
EcoT38I GRGCYC 2 cut(s) 254, 576
ErhI CCWWGG 3 cut(s) 135, 150, 190
FaeI CATG 5 cut(s) 58, 214, 238, 467, 681
FaiI YATR 7 cut(s) 56, 212, 236, 465, 591, 679, 767
FaqI GGGAC 1 cut(s) 356
FatI CATG 5 cut(s) 54, 210, 234, 463, 677
FbaI TGATCA 2 cut(s) 237, 438
FblI GTMKAC 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 707
FriOI GRGCYC 2 cut(s) 254, 576
Fsp4HI GCNGC 1 cut(s) 707
FspBI CTAG 2 cut(s) 483, 693
GlaI GCGC 1 cut(s) 104
GluI GCNGC 1 cut(s) 707
HaeIII GGCC 3 cut(s) 195, 329, 709
HapII CCGG 6 cut(s) 292, 358, 494, 582, 703, 710
HhaI GCGC 1 cut(s) 105
Hin1II CATG 5 cut(s) 58, 214, 238, 467, 681
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 52, 201
HindII GTYRAC 2 cut(s) 52, 201
HinfI GANTC 8 cut(s) 71, 322, 365, 490, 497, 520, 530, 612
HpaI GTTAAC 1 cut(s) 201
HpaII CCGG 6 cut(s) 292, 358, 494, 582, 703, 710
HphI GGTGA 2 cut(s) 175, 193
Hpy166II GTNNAC 2 cut(s) 52, 201
Hpy188I TCNGA 9 cut(s) 41, 249, 282, 374, 414, 611, 733, 753, 813
Hpy188III TCNNGA 7 cut(s) 15, 127, 341, 464, 494, 524, 582
Hpy8I GTNNAC 2 cut(s) 52, 201
HpyAV CCTTC 3 cut(s) 160, 328, 767
HpyCH4III ACNGT 4 cut(s) 11, 563, 619, 806
HpyCH4IV ACGT 2 cut(s) 284, 717
HpyCH4V TGCA 1 cut(s) 744
HpyF3I CTNAG 3 cut(s) 117, 246, 413
HpySE526I ACGT 2 cut(s) 284, 717
Hsp92II CATG 5 cut(s) 58, 214, 238, 467, 681
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 2 cut(s) 493, 581
KroI GCCGGC 1 cut(s) 702
KroNI GCCGGC 1 cut(s) 704
Ksp22I TGATCA 2 cut(s) 237, 438
KspAI GTTAAC 1 cut(s) 201
Kzo9I GATC 6 cut(s) 91, 123, 237, 374, 438, 748
LmnI GCTCC 4 cut(s) 236, 257, 384, 510
LweI GCATC 1 cut(s) 249
MaeI CTAG 2 cut(s) 483, 693
MaeII ACGT 2 cut(s) 284, 717
MaeIII GTNAC 2 cut(s) 272, 535
MalI GATC 6 cut(s) 93, 125, 239, 376, 440, 750
MboI GATC 6 cut(s) 91, 123, 237, 374, 438, 748
MboII GAAGA 7 cut(s) 304, 529, 539, 559, 562, 640, 766
MhlI GDGCHC 4 cut(s) 233, 254, 515, 576
MlsI TGGCCA 1 cut(s) 329
MluCI AATT 4 cut(s) 431, 457, 478, 577
MluNI TGGCCA 1 cut(s) 329
MlyI GAGTC 4 cut(s) 80, 359, 491, 524
MmeI TCCRAC 2 cut(s) 64, 711
Mox20I TGGCCA 1 cut(s) 329
MreI CGCCGGCG 1 cut(s) 702
MroI TCCGGA 2 cut(s) 493, 581
MroNI GCCGGC 1 cut(s) 702
MroXI GAANNNNTTC 1 cut(s) 321
MscI TGGCCA 1 cut(s) 329
MseI TTAA 2 cut(s) 200, 823
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 329
MspI CCGG 6 cut(s) 292, 358, 494, 582, 703, 710
MspR9I CCNGG 2 cut(s) 292, 293
MvnI CGCG 1 cut(s) 103
NaeI GCCGGC 1 cut(s) 704
NciI CCSGG 2 cut(s) 292, 293
NdeII GATC 6 cut(s) 91, 123, 237, 374, 438, 748
NgoMIV GCCGGC 1 cut(s) 702
NlaIII CATG 5 cut(s) 58, 214, 238, 467, 681
NlaIV GGNNCC 1 cut(s) 13
NmeAIII GCCGAG 1 cut(s) 479
NmuCI GTSAC 1 cut(s) 272
NspV TTCGAA 2 cut(s) 315, 488
PagI TCATGA 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 374
PdiI GCCGGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 321
PfeI GAWTC 4 cut(s) 322, 490, 520, 612
PkrI GCNGC 1 cut(s) 708
Ple19I CGATCG 1 cut(s) 126
PleI GAGTC 4 cut(s) 79, 359, 491, 524
PpsI GAGTC 4 cut(s) 79, 359, 491, 524
Psp124BI GAGCTC 2 cut(s) 254, 576
Psp1406I AACGTT 1 cut(s) 717
PspN4I GGNNCC 1 cut(s) 13
PspPI GGNCC 1 cut(s) 194
PvuI CGATCG 1 cut(s) 126
RsaI GTAC 1 cut(s) 594
RsaNI GTAC 1 cut(s) 593
RseI CAYNNNNRTG 1 cut(s) 59
SacI GAGCTC 2 cut(s) 254, 576
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 200, 823
SatI GCNGC 1 cut(s) 707
Sau3AI GATC 6 cut(s) 91, 123, 237, 374, 438, 748
Sau96I GGNCC 1 cut(s) 194
SchI GAGTC 4 cut(s) 80, 359, 491, 524
ScrFI CCNGG 2 cut(s) 292, 293
SduI GDGCHC 4 cut(s) 233, 254, 515, 576
SfaNI GCATC 1 cut(s) 249
SfcI CTRYAG 1 cut(s) 447
SfuI TTCGAA 2 cut(s) 315, 488
SgrAI CRCCGGYG 1 cut(s) 702
SmaI CCCGGG 1 cut(s) 293
SmiMI CAYNNNNRTG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 692
Sse9I AATT 4 cut(s) 431, 457, 478, 577
SsiI CCGC 3 cut(s) 155, 706, 737
SspMI CTAG 2 cut(s) 483, 693
SstI GAGCTC 2 cut(s) 254, 576
StyD4I CCNGG 2 cut(s) 290, 291
StyI CCWWGG 3 cut(s) 135, 150, 190
TaaI ACNGT 4 cut(s) 11, 563, 619, 806
TaiI ACGT 2 cut(s) 287, 720
TaqI TCGA 8 cut(s) 51, 69, 126, 141, 315, 377, 392, 488
TaqII GACCGA 1 cut(s) 255
TasI AATT 4 cut(s) 431, 457, 478, 577
TatI WGTACW 1 cut(s) 592
TauI GCSGC 1 cut(s) 709
TfiI GAWTC 4 cut(s) 322, 490, 520, 612
Tru1I TTAA 2 cut(s) 200, 823
Tru9I TTAA 2 cut(s) 200, 823
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 4 cut(s) 17, 410, 444, 480
TspGWI ACGGA 2 cut(s) 397, 523
TspMI CCCGGG 1 cut(s) 291
XmaI CCCGGG 1 cut(s) 291
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 321
XspI CTAG 2 cut(s) 483, 693
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.