pycom09g02240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0016374
Physical Location & Seq
Forward (+)
1723003 .. 1723949
947 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02240.2

Sequence Viewer

Length: 849 bp
ATGAAGAAAAACGTCTCGAAGTCAAAACCCAAGTTTTTGCACTGTTTCCGACCGGTGGACGTGGACATGATGTTCGAGACCAAAGCCGTCCGGAGGAGACAAGTTCGGACTGTCGAAAACAAGGAGGACAAGAAGGCGGCTCTGGTGACGAAAACCATGTCTCTGGACAGAGGGTTTTCTTCTCCGGCGGATTCTGAGAACTCGAAAATGCCTCCTCGTCCGAACCGAACTTTTTCGAAGGCGGTGAAAGCCGTGGTGTTCGAAACTATCTTGGCGAAGAAAGCTCGTGATCGGAAAGTTTGCCGGCAGGACTCGTTCGGATCAAAGCGGTGTTTTTCGCTCAGAAGCGAGGCGTCTCTGAATTTGGGAGGCGATGAGTCGGTGAAGAAATTTGAAGAAACAAAACCAATTTCTGAAATGCCATTACATTCTCGTTCTTCCAGTTCATCATCGTCCGCATTATCTTCTTCGAGTTCGGTTTCGGAATCCAAAAGGTTGTCCAAAACTTTCTCGGACCCGACGAAACAGAGCCTCCGGAATCCTCAAAACCCCGCGGCGAAACCAAAGAATACGGAAGTGGTGTGCTCCGGTTTCAACTCCGGAACATATTTTCTTCTCATCAGCCTTGCAGTGACGGTGTTTTGGGGCAAGGTGATTGCAATCCTTGTCTCGTCGATCTGGCTCTACTTTTTTCCGTGGCGGAGTTCATGTAAAATATCGCCGGAAAATGTGAGGAGGTGGTCGGATGCGGAGTGCAGGGACAATAACAAGAGGGTAATAATGGAAGGGTTGATTGAGAGGAAAAACCACCTCCACCACCACCACCAGCAGGGGGAGAGAAGGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.05

Weight (kDa)

10.15

Isoelectric Point (pI)

70.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 554
AccIII TCCGGA 3 cut(s) 90, 534, 599
AciI CCGC 9 cut(s) 137, 188, 242, 328, 456, 552, 554, 700, 749
AclWI GGATC 1 cut(s) 328
AcsI RAATTY 2 cut(s) 361, 389
AcyI GRCGYC 1 cut(s) 353
AfiI CCNNNNNNNGG 4 cut(s) 55, 93, 829, 832
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 2 cut(s) 395, 595
AjiI CACGTC 1 cut(s) 61
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 284
AluI AGCT 1 cut(s) 284
Alw21I GWGCWC 1 cut(s) 587
Alw26I GTCTC 6 cut(s) 19, 71, 91, 165, 360, 673
AlwI GGATC 1 cut(s) 328
Aor13HI TCCGGA 3 cut(s) 90, 534, 599
ApoI RAATTY 2 cut(s) 361, 389
ArsI GACNNNNNNTTYG 4 cut(s) 56, 88, 143, 175
AsiGI ACCGGT 1 cut(s) 52
Asp700I GAANNNNTTC 1 cut(s) 232
AspS9I GGNCC 1 cut(s) 514
AsuHPI GGTGA 4 cut(s) 157, 256, 394, 664
AsuII TTCGAA 2 cut(s) 236, 261
AvaII GGWCC 1 cut(s) 514
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 587
BceAI ACGGC 2 cut(s) 71, 236
BcoDI GTCTC 6 cut(s) 19, 71, 91, 165, 360, 673
BisI GCNGC 2 cut(s) 138, 555
BlsI GCNGC 2 cut(s) 139, 556
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 1 cut(s) 514
BmiI GGNNCC 1 cut(s) 516
BmsI GCATC 1 cut(s) 736
Bpu14I TTCGAA 2 cut(s) 236, 261
BsaBI GATNNNNATC 1 cut(s) 659
BsaHI GRCGYC 1 cut(s) 353
BsaI GGTCTC 1 cut(s) 71
BsaJI CCNNGG 3 cut(s) 252, 552, 695
BsaWI WCCGGW 5 cut(s) 52, 90, 534, 587, 599
BsaXI ACNNNNNCTCC 4 cut(s) 516, 546, 694, 724
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 93, 829, 832
Bse118I RCCGGY 2 cut(s) 52, 303
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 1 cut(s) 659
BseAI TCCGGA 3 cut(s) 90, 534, 599
BseDI CCNNGG 3 cut(s) 252, 552, 695
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 1 cut(s) 659
BseLI CCNNNNNNNGG 4 cut(s) 55, 93, 829, 832
BseMII CTCAG 2 cut(s) 186, 355
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 3 cut(s) 109, 204, 748
BsgI GTGCAG 1 cut(s) 775
Bsh1236I CGCG 1 cut(s) 554
Bsh1285I CGRYCG 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 587
BsiSI CCGG 8 cut(s) 53, 91, 185, 304, 535, 588, 600, 722
BslFI GGGAC 1 cut(s) 773
BslI CCNNNNNNNGG 4 cut(s) 55, 93, 829, 832
BsmAI GTCTC 6 cut(s) 19, 71, 91, 165, 360, 673
BsmBI CGTCTC 2 cut(s) 19, 360
BsmFI GGGAC 1 cut(s) 773
Bso31I GGTCTC 1 cut(s) 71
Bsp119I TTCGAA 2 cut(s) 236, 261
Bsp1286I GDGCHC 1 cut(s) 587
Bsp13I TCCGGA 3 cut(s) 90, 534, 599
Bsp143I GATC 3 cut(s) 289, 320, 675
BspACI CCGC 9 cut(s) 137, 188, 242, 328, 456, 552, 554, 700, 749
BspCNI CTCAG 2 cut(s) 187, 354
BspEI TCCGGA 3 cut(s) 90, 534, 599
BspFNI CGCG 1 cut(s) 554
BspLI GGNNCC 1 cut(s) 516
BspPI GGATC 1 cut(s) 328
BspT104I TTCGAA 2 cut(s) 236, 261
BspTNI GGTCTC 1 cut(s) 71
BsrFI RCCGGY 2 cut(s) 52, 303
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 2 cut(s) 52, 303
BssECI CCNNGG 3 cut(s) 252, 552, 695
BssMI GATC 3 cut(s) 289, 320, 675
BssNI GRCGYC 1 cut(s) 353
BssSI CACGAG 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 285
Bst4CI ACNGT 3 cut(s) 44, 112, 637
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 2 cut(s) 236, 261
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 2 cut(s) 195, 341
BstDSI CCRYGG 3 cut(s) 252, 552, 695
BstF5I GGATG 1 cut(s) 751
BstFNI CGCG 1 cut(s) 554
BstKTI GATC 3 cut(s) 292, 323, 678
BstMAI GTCTC 6 cut(s) 19, 71, 91, 165, 360, 673
BstMBI GATC 3 cut(s) 289, 320, 675
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 248, 281
BstUI CGCG 1 cut(s) 554
BstXI CCANNNNNNTGG 1 cut(s) 163
BtgI CCRYGG 3 cut(s) 252, 552, 695
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 751
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 40, 636
Cac8I GCNNGC 1 cut(s) 305
Cfr10I RCCGGY 2 cut(s) 52, 303
Cfr13I GGNCC 1 cut(s) 514
Cfr42I CCGCGG 1 cut(s) 555
CseI GACGC 1 cut(s) 342
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 3 cut(s) 67, 157, 708
CviJI RGCY 7 cut(s) 86, 140, 251, 284, 531, 624, 682
CviKI_1 RGCY 7 cut(s) 86, 140, 251, 284, 531, 624, 682
DdeI CTNAG 2 cut(s) 195, 341
DpnI GATC 3 cut(s) 291, 322, 677
DpnII GATC 3 cut(s) 289, 320, 675
EciI GGCGGA 2 cut(s) 203, 715
Eco31I GGTCTC 1 cut(s) 71
Eco47I GGWCC 1 cut(s) 514
Esp3I CGTCTC 2 cut(s) 19, 360
FaeI CATG 3 cut(s) 70, 160, 711
FaiI YATR 4 cut(s) 68, 158, 607, 709
FaqI GGGAC 1 cut(s) 773
FatI CATG 3 cut(s) 66, 156, 707
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 138, 555
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 2 cut(s) 138, 555
GluI GCNGC 2 cut(s) 138, 555
HapII CCGG 8 cut(s) 53, 91, 185, 304, 535, 588, 600, 722
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 3 cut(s) 70, 160, 711
HinfI GANTC 5 cut(s) 191, 311, 377, 485, 538
HpaII CCGG 8 cut(s) 53, 91, 185, 304, 535, 588, 600, 722
HphI GGTGA 4 cut(s) 157, 256, 394, 664
Hpy166II GTNNAC 2 cut(s) 58, 64
Hpy188III TCNNGA 7 cut(s) 16, 76, 91, 164, 287, 535, 600
Hpy8I GTNNAC 2 cut(s) 58, 64
Hpy99I CGWCG 2 cut(s) 523, 676
HpyAV CCTTC 4 cut(s) 127, 232, 779, 834
HpyCH4III ACNGT 3 cut(s) 44, 112, 637
HpyCH4IV ACGT 2 cut(s) 12, 60
HpyCH4V TGCA 4 cut(s) 40, 629, 659, 756
HpyF10VI GCNNNNNNNGC 2 cut(s) 248, 281
HpyF3I CTNAG 2 cut(s) 195, 341
HpySE526I ACGT 2 cut(s) 12, 60
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 3 cut(s) 70, 160, 711
Kpn2I TCCGGA 3 cut(s) 90, 534, 599
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
KspI CCGCGG 1 cut(s) 555
Kzo9I GATC 3 cut(s) 289, 320, 675
LmnI GCTCC 1 cut(s) 590
LweI GCATC 1 cut(s) 736
MaeII ACGT 2 cut(s) 12, 60
MaeIII GTNAC 2 cut(s) 145, 631
MalI GATC 3 cut(s) 291, 322, 677
MboI GATC 3 cut(s) 289, 320, 675
MboII GAAGA 9 cut(s) 16, 171, 289, 397, 407, 429, 456, 459, 605
MhlI GDGCHC 1 cut(s) 587
MluCI AATT 3 cut(s) 361, 389, 408
MlyI GAGTC 2 cut(s) 305, 386
MmeI TCCRAC 2 cut(s) 73, 723
MroI TCCGGA 3 cut(s) 90, 534, 599
MroNI GCCGGC 1 cut(s) 303
MroXI GAANNNNTTC 1 cut(s) 232
MspA1I CMGCKG 1 cut(s) 554
MspI CCGG 8 cut(s) 53, 91, 185, 304, 535, 588, 600, 722
MvnI CGCG 1 cut(s) 554
MwoI GCNNNNNNNGC 2 cut(s) 248, 281
NaeI GCCGGC 1 cut(s) 305
NdeII GATC 3 cut(s) 289, 320, 675
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 3 cut(s) 70, 160, 711
NlaIV GGNNCC 1 cut(s) 516
NmuCI GTSAC 2 cut(s) 145, 631
NspV TTCGAA 2 cut(s) 236, 261
PcsI WCGNNNNNNNCGW 2 cut(s) 223, 518
PdiI GCCGGC 1 cut(s) 305
PdmI GAANNNNTTC 1 cut(s) 232
PfeI GAWTC 3 cut(s) 191, 485, 538
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 139, 556
PleI GAGTC 2 cut(s) 305, 385
PpsI GAGTC 2 cut(s) 305, 385
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 514
SacII CCGCGG 1 cut(s) 555
SatI GCNGC 2 cut(s) 138, 555
Sau3AI GATC 3 cut(s) 289, 320, 675
Sau96I GGNCC 1 cut(s) 514
SchI GAGTC 2 cut(s) 305, 386
SduI GDGCHC 1 cut(s) 587
SetI ASST 7 cut(s) 15, 63, 286, 497, 654, 740, 813
SfaNI GCATC 1 cut(s) 736
Sfr303I CCGCGG 1 cut(s) 555
SfuI TTCGAA 2 cut(s) 236, 261
SgrBI CCGCGG 1 cut(s) 555
SinI GGWCC 1 cut(s) 514
Sse9I AATT 3 cut(s) 361, 389, 408
SsiI CCGC 9 cut(s) 137, 188, 242, 328, 456, 552, 554, 700, 749
TaaI ACNGT 3 cut(s) 44, 112, 637
TaiI ACGT 2 cut(s) 15, 63
TaqI TCGA 8 cut(s) 17, 75, 114, 203, 236, 261, 470, 674
TasI AATT 3 cut(s) 361, 389, 408
TauI GCSGC 2 cut(s) 140, 557
TfiI GAWTC 3 cut(s) 191, 485, 538
TscAI CASTG 2 cut(s) 47, 636
TseFI GTSAC 2 cut(s) 145, 631
Tsp45I GTSAC 2 cut(s) 145, 631
TspDTI ATGAA 3 cut(s) 17, 435, 696
TspGWI ACGGA 2 cut(s) 587, 684
TspRI CASTG 2 cut(s) 47, 636
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 2 cut(s) 361, 389
XmnI GAANNNNTTC 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.