Prupe.3G227700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0016374
Physical Location & Seq
Reverse (-)
22688150 .. 22690086
1937 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G227700.1

Sequence Viewer

Length: 819 bp
ATGAAAAACGTTCCAAAACCAAAACCCAAGTTTCTGCACTGTTTCCGACCGGTCGTGGACATGGACATGGTGCTCGAGTCGAAAGCTGTAAGGATTGTTGAGAAGAAGGAGAACAAGAACGAGAACTCTTTGTCGACTAAAACCATGTCTTTGGACAGAGGGTGCACTGTCAAGTCAGAGAACACGAAAATGCCTCCTCGTCCAAACCGAACGTTTTCTCGGGCGATCAAAGCCGTTGTGTTTGAAACAATTCTGGCCAAGAGAGCTCGTGATCGAAAAGGTTACAGGCAAGACTCGTTTGGATCAAAAAGTTTTTCGGTGAAAAGTGAAGCACCTCTGAATTTGGGCAGCGATGAATTGATGAAGGTTGAAGAAACCAAACCCAATTTGGAGACGTTGCATACTTCTTCTCCTAGTTCATTATCACCATCATCAATATCACGTTCAAGTTCGATTTCAGAATCCAAAAGATTGTCCAAAGATTTATCAGACTCAATGAAACAGAGCAAAAAAAACCAACAAGACCCTGCAGTGAAATCAAAGAACACGCAAATGAGTTCCTCTGATTTCAACTCTGGGATATATTTTCTTCTCATAAGCCTTGCGATCACAGTGTTTTGGGGCAGGGTCTTTGCAATCCTTGTCGCATCAACTTGGCTCTACTTTTTTCCAGGGCGTTATAATGCAAGTAATGTGAAGCCGGAAAACGTGAGAAAGTGGTCGGAGGCAGAGTGCAGAGACAACAAGAAGAAGGTCATAATGGAAGGGTTGATTGAAAGGAAGAACCACCACAGCCAGAGAGAAAACAGAGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

273

Amino Acids

30.93

Weight (kDa)

9.98

Isoelectric Point (pI)

49.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 681
AccI GTMKAC 1 cut(s) 134
AclI AACGTT 2 cut(s) 9, 212
AclWI GGATC 1 cut(s) 310
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 1 cut(s) 340
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 5 cut(s) 245, 371, 447, 571, 776
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 2 cut(s) 86, 266
AluI AGCT 2 cut(s) 86, 266
Alw21I GWGCWC 3 cut(s) 75, 167, 268
Alw26I GTCTC 2 cut(s) 386, 732
Alw44I GTGCAC 1 cut(s) 163
AlwI GGATC 1 cut(s) 310
Ama87I CYCGRG 2 cut(s) 74, 219
AoxI GGCC 1 cut(s) 255
ApaLI GTGCAC 1 cut(s) 163
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 1 cut(s) 340
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 2 cut(s) 214, 249
AsuHPI GGTGA 2 cut(s) 331, 417
AvaI CYCGRG 2 cut(s) 74, 219
BaeGI GKGCMC 1 cut(s) 167
BalI TGGCCA 1 cut(s) 257
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 267
Bbv12I GWGCWC 3 cut(s) 75, 167, 268
BbvI GCAGC 1 cut(s) 360
BccI CCATC 1 cut(s) 436
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 672
BcoDI GTCTC 2 cut(s) 386, 732
BfaI CTAG 1 cut(s) 414
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 1 cut(s) 349
BlsI GCNGC 1 cut(s) 350
Bme1390I CCNGG 1 cut(s) 672
BmeT110I CYCGRG 2 cut(s) 74, 219
BmrFI CCNGG 1 cut(s) 672
BmsI GCATC 1 cut(s) 656
BsaJI CCNNGG 1 cut(s) 671
BsaWI WCCGGW 1 cut(s) 49
BsaXI ACNNNNNCTCC 4 cut(s) 394, 424, 716, 746
Bse118I RCCGGY 1 cut(s) 49
BseBI CCWGG 1 cut(s) 672
BseDI CCNNGG 1 cut(s) 671
BseRI GAGGAG 1 cut(s) 186
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 1 cut(s) 360
BsgI GTGCAG 2 cut(s) 20, 754
Bsh1285I CGRYCG 2 cut(s) 50, 54
BshFI GGCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 49
BsiEI CGRYCG 2 cut(s) 50, 54
BsiHKAI GWGCWC 3 cut(s) 75, 167, 268
BsiHKCI CYCGRG 2 cut(s) 74, 219
BsiSI CCGG 2 cut(s) 50, 701
BsmAI GTCTC 2 cut(s) 386, 732
BsmBI CGTCTC 1 cut(s) 386
BsnI GGCC 1 cut(s) 257
BsoBI CYCGRG 2 cut(s) 74, 219
Bsp1286I GDGCHC 3 cut(s) 75, 167, 268
Bsp143I GATC 4 cut(s) 225, 271, 302, 606
BspANI GGCC 1 cut(s) 257
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 1 cut(s) 310
BsrFI RCCGGY 1 cut(s) 49
BssAI RCCGGY 1 cut(s) 49
BssECI CCNNGG 1 cut(s) 671
BssMI GATC 4 cut(s) 225, 271, 302, 606
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 3 cut(s) 41, 169, 613
BstKTI GATC 4 cut(s) 228, 274, 305, 609
BstMAI GTCTC 2 cut(s) 386, 732
BstMBI GATC 4 cut(s) 225, 271, 302, 606
BstMCI CGRYCG 2 cut(s) 50, 54
BstMWI GCNNNNNNNGC 2 cut(s) 230, 263
BstNI CCWGG 1 cut(s) 672
BstSCI CCNGG 1 cut(s) 670
BstSFI CTRYAG 1 cut(s) 528
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 1 cut(s) 360
BstXI CCANNNNNNTGG 1 cut(s) 151
BsuRI GGCC 1 cut(s) 257
BtgZI GCGATG 1 cut(s) 366
BtsI GCAGTG 1 cut(s) 537
BtsIMutI CAGTG 4 cut(s) 37, 165, 537, 618
Cfr10I RCCGGY 1 cut(s) 49
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 3 cut(s) 61, 67, 145
CviJI RGCY 8 cut(s) 86, 233, 257, 266, 600, 658, 700, 795
CviKI_1 RGCY 8 cut(s) 86, 233, 257, 266, 600, 658, 700, 795
DpnI GATC 4 cut(s) 227, 273, 304, 608
DpnII GATC 4 cut(s) 225, 271, 302, 606
EaeI YGGCCR 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 266
Eco24I GRGCYC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 266
Eco88I CYCGRG 2 cut(s) 74, 219
EcoICRI GAGCTC 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 670
EcoT38I GRGCYC 1 cut(s) 268
Esp3I CGTCTC 1 cut(s) 386
FaeI CATG 3 cut(s) 64, 70, 148
FaiI YATR 8 cut(s) 62, 68, 146, 402, 583, 596, 681, 758
FatI CATG 3 cut(s) 60, 66, 144
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 349
FriOI GRGCYC 1 cut(s) 268
Fsp4HI GCNGC 1 cut(s) 349
FspBI CTAG 1 cut(s) 414
GluI GCNGC 1 cut(s) 349
HaeIII GGCC 1 cut(s) 257
HapII CCGG 2 cut(s) 50, 701
Hin1II CATG 3 cut(s) 64, 70, 148
HincII GTYRAC 1 cut(s) 135
HindII GTYRAC 1 cut(s) 135
HinfI GANTC 4 cut(s) 77, 293, 461, 491
HpaII CCGG 2 cut(s) 50, 701
HphI GGTGA 2 cut(s) 331, 417
Hpy166II GTNNAC 3 cut(s) 58, 135, 165
Hpy188I TCNGA 7 cut(s) 47, 178, 339, 460, 490, 565, 724
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 3 cut(s) 58, 135, 165
HpyAV CCTTC 4 cut(s) 100, 358, 745, 758
HpyCH4III ACNGT 3 cut(s) 41, 169, 613
HpyCH4IV ACGT 5 cut(s) 9, 212, 395, 442, 708
HpyCH4V TGCA 7 cut(s) 37, 165, 400, 530, 635, 686, 735
HpyF10VI GCNNNNNNNGC 2 cut(s) 230, 263
HpySE526I ACGT 5 cut(s) 9, 212, 395, 442, 708
Hsp92II CATG 3 cut(s) 64, 70, 148
Kzo9I GATC 4 cut(s) 225, 271, 302, 606
Lsp1109I GCAGC 1 cut(s) 360
LweI GCATC 1 cut(s) 656
MaeI CTAG 1 cut(s) 414
MaeII ACGT 5 cut(s) 9, 212, 395, 442, 708
MaeIII GTNAC 1 cut(s) 281
MalI GATC 4 cut(s) 227, 273, 304, 608
MboI GATC 4 cut(s) 225, 271, 302, 606
MboII GAAGA 6 cut(s) 115, 383, 399, 581, 760, 793
MhlI GDGCHC 3 cut(s) 75, 167, 268
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 4 cut(s) 249, 340, 356, 385
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 3 cut(s) 86, 287, 485
MmeI TCCRAC 2 cut(s) 70, 702
MnlI CCTC 7 cut(s) 152, 204, 207, 345, 571, 718, 803
Mox20I TGGCCA 1 cut(s) 257
MroXI GAANNNNTTC 2 cut(s) 214, 249
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 817
MslI CAYNNNNRTG 3 cut(s) 65, 188, 551
Msp20I TGGCCA 1 cut(s) 257
MspI CCGG 2 cut(s) 50, 701
MspR9I CCNGG 1 cut(s) 672
MvaI CCWGG 1 cut(s) 672
MwoI GCNNNNNNNGC 2 cut(s) 230, 263
NdeII GATC 4 cut(s) 225, 271, 302, 606
NlaIII CATG 3 cut(s) 64, 70, 148
PaeR7I CTCGAG 1 cut(s) 74
PcsI WCGNNNNNNNCGW 1 cut(s) 205
PdmI GAANNNNTTC 2 cut(s) 214, 249
PfeI GAWTC 1 cut(s) 461
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 1 cut(s) 350
PleI GAGTC 3 cut(s) 85, 287, 485
PpsI GAGTC 3 cut(s) 85, 287, 485
PsiI TTATAA 1 cut(s) 681
Psp124BI GAGCTC 1 cut(s) 268
Psp1406I AACGTT 2 cut(s) 9, 212
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspXI VCTCGAGB 1 cut(s) 74
PstI CTGCAG 1 cut(s) 532
RseI CAYNNNNRTG 3 cut(s) 65, 188, 551
SacI GAGCTC 1 cut(s) 268
SalI GTCGAC 1 cut(s) 133
SaqAI TTAA 1 cut(s) 817
SatI GCNGC 1 cut(s) 349
Sau3AI GATC 4 cut(s) 225, 271, 302, 606
SchI GAGTC 3 cut(s) 86, 287, 485
ScrFI CCNGG 1 cut(s) 672
SduI GDGCHC 3 cut(s) 75, 167, 268
SfaNI GCATC 1 cut(s) 656
SfcI CTRYAG 1 cut(s) 528
Sfr274I CTCGAG 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 74
SmiMI CAYNNNNRTG 3 cut(s) 65, 188, 551
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 4 cut(s) 249, 340, 356, 385
SspMI CTAG 1 cut(s) 414
SstI GAGCTC 1 cut(s) 268
StyD4I CCNGG 1 cut(s) 670
TaaI ACNGT 3 cut(s) 41, 169, 613
TaiI ACGT 5 cut(s) 12, 215, 398, 445, 711
TaqI TCGA 5 cut(s) 75, 80, 134, 274, 452
TasI AATT 4 cut(s) 249, 340, 356, 385
TfiI GAWTC 1 cut(s) 461
Tru1I TTAA 1 cut(s) 817
Tru9I TTAA 1 cut(s) 817
TscAI CASTG 4 cut(s) 44, 172, 537, 618
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 5 cut(s) 17, 369, 377, 408, 512
TspRI CASTG 4 cut(s) 44, 172, 537, 618
VneI GTGCAC 1 cut(s) 163
XapI RAATTY 1 cut(s) 340
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XhoI CTCGAG 1 cut(s) 74
XmiI GTMKAC 1 cut(s) 134
XmnI GAANNNNTTC 2 cut(s) 214, 249
XspI CTAG 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.