Rh2BG567400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0016374
Physical Location & Seq
Reverse (-)
78230785 .. 78232382
1598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG567400.1

Sequence Viewer

Length: 831 bp
ATGAAAAACGGTTCCAGAAGCAAGTTTCTGCTTTGCTTCCGACCCGTGGTCGACATGGAAATGGTGGTCGAGTCTAAAGGTGTCGTCGTCGATCGTCCTACGCGCAGAAGTAGAACTAAGCCTATCGAGAACACCAAGGTCGAAAAGACCAAGGTGGTGGAGGTGAAGGAGGAGGAGGAGGAGGAGGTGAAAGTCCAAGCCCCGTTAACCAAAACCATGTCTTTGGATAGAGAGTGCTCCATGATCAGTTCTCAGAGCCCCAAGATGCCTCGGTCTCGTCACAATCGGACGTTTTCCCGGGTCATCAAAGCCGTGGTCTTCGAAACGATTCTGGCCAAGAAGGTTCGGGACGGCAGAGTTGTCCGGCAAGACTGGTTCGGATCGAAACGGAGCTATTCGATGAACAGACGAAAGTCTCTGAGTTTGGAGACTAATGAATTGATGATCACACCTGCAGAAACTAATTCTCATGAAGTCAAAGTCAATTCTAGTTCGAATCCGGACTCGGCAAAACAGAGCACGAAGAATCAAGAAGACTCTGTTACGAAGCCGAAGAAGAACGAAAAGGGTTCCTGTGAGCTCAATTCCGGAATGTATTTACTTCTTATCAGCCTCGGAATCACTGTTTTCTGGGGGAGGGTGTTTGGTATTCTCTTCACATCACTTTGGCTCTACTTTTTCACATGGAGTTGCCCAACTAGTTATCGCCGGCGTCCGGAAAACGTTAGAAAGTGGTCGGAGGCGGAGTCCAGGGATCAGAAGAGGAGGGTCATAATGGAAGGGTTGATTGAAAGAAACCACCATTTCCACAGTAGTCAGAGAGAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

32.14

Weight (kDa)

9.92

Isoelectric Point (pI)

66.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 460
Acc36I ACCTGC 1 cut(s) 460
AccI GTMKAC 1 cut(s) 51
AccII CGCG 1 cut(s) 103
AccIII TCCGGA 3 cut(s) 499, 587, 715
AciI CCGC 1 cut(s) 743
AclI AACGTT 1 cut(s) 723
AclWI GGATC 2 cut(s) 388, 762
AcoI YGGCCR 1 cut(s) 333
AcyI GRCGYC 1 cut(s) 712
AfiI CCNNNNNNNGG 2 cut(s) 46, 715
AgsI TTSAA 1 cut(s) 791
AhdI GACNNNNNGTC 1 cut(s) 47
AhlI ACTAGT 1 cut(s) 698
AjnI CCWGG 1 cut(s) 749
AluBI AGCT 2 cut(s) 393, 580
AluI AGCT 2 cut(s) 393, 580
Alw21I GWGCWC 3 cut(s) 239, 521, 582
Alw26I GTCTC 3 cut(s) 279, 420, 422
AlwI GGATC 2 cut(s) 388, 762
Ama87I CYCGRG 1 cut(s) 297
Aor13HI TCCGGA 3 cut(s) 499, 587, 715
AoxI GGCC 1 cut(s) 333
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
Asp700I GAANNNNTTC 1 cut(s) 327
AspLEI GCGC 1 cut(s) 105
AsuC2I CCSGG 2 cut(s) 298, 299
AsuHPI GGTGA 2 cut(s) 175, 199
AsuII TTCGAA 2 cut(s) 321, 494
AvaI CYCGRG 1 cut(s) 297
BalI TGGCCA 1 cut(s) 335
BanII GRGCYC 2 cut(s) 260, 582
BbsI GAAGAC 2 cut(s) 310, 540
Bbv12I GWGCWC 3 cut(s) 239, 521, 582
BceAI ACGGC 2 cut(s) 296, 367
BciT130I CCWGG 1 cut(s) 751
BclI TGATCA 2 cut(s) 243, 444
BcnI CCSGG 2 cut(s) 298, 299
BcoDI GTCTC 3 cut(s) 279, 420, 422
BcuI ACTAGT 1 cut(s) 698
BfaI CTAG 2 cut(s) 489, 699
BfmI CTRYAG 1 cut(s) 453
BfuAI ACCTGC 1 cut(s) 460
Bme1390I CCNGG 3 cut(s) 298, 299, 751
BmeRI GACNNNNNGTC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 13, 571
BmrFI CCNGG 3 cut(s) 298, 299, 751
BmsI GCATC 1 cut(s) 255
BoxI GACNNNNGTC 1 cut(s) 412
BpiI GAAGAC 2 cut(s) 310, 540
Bpu14I TTCGAA 2 cut(s) 321, 494
BpuMI CCSGG 2 cut(s) 298, 299
BsaHI GRCGYC 1 cut(s) 712
BsaI GGTCTC 1 cut(s) 279
BsaJI CCNNGG 8 cut(s) 45, 135, 150, 269, 297, 312, 613, 750
BsaWI WCCGGW 3 cut(s) 499, 587, 715
BsaXI ACNNNNNCTCC 2 cut(s) 731, 761
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 715
Bse118I RCCGGY 1 cut(s) 708
Bse1I ACTGG 1 cut(s) 377
BseAI TCCGGA 3 cut(s) 499, 587, 715
BseBI CCWGG 1 cut(s) 751
BseDI CCNNGG 8 cut(s) 45, 135, 150, 269, 297, 312, 613, 750
BseLI CCNNNNNNNGG 2 cut(s) 46, 715
BseMII CTCAG 2 cut(s) 266, 410
BseNI ACTGG 1 cut(s) 377
BseRI GAGGAG 6 cut(s) 185, 188, 191, 194, 197, 778
Bsh1236I CGCG 1 cut(s) 103
Bsh1285I CGRYCG 1 cut(s) 94
BshFI GGCC 1 cut(s) 335
BsiEI CGRYCG 1 cut(s) 94
BsiHKAI GWGCWC 3 cut(s) 239, 521, 582
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 6 cut(s) 298, 364, 500, 588, 709, 716
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 46, 715
BsmAI GTCTC 3 cut(s) 279, 420, 422
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 1 cut(s) 335
Bso31I GGTCTC 1 cut(s) 279
BsoBI CYCGRG 1 cut(s) 297
Bsp119I TTCGAA 2 cut(s) 321, 494
Bsp1286I GDGCHC 4 cut(s) 239, 260, 521, 582
Bsp13I TCCGGA 3 cut(s) 499, 587, 715
Bsp143I GATC 5 cut(s) 91, 243, 380, 444, 754
BspACI CCGC 1 cut(s) 743
BspANI GGCC 1 cut(s) 335
BspCNI CTCAG 2 cut(s) 265, 411
BspEI TCCGGA 3 cut(s) 499, 587, 715
BspFNI CGCG 1 cut(s) 103
BspHI TCATGA 1 cut(s) 469
BspLI GGNNCC 2 cut(s) 13, 571
BspMAI CTGCAG 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 460
BspPI GGATC 2 cut(s) 388, 762
BspT104I TTCGAA 2 cut(s) 321, 494
BspTNI GGTCTC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 708
BsrI ACTGG 1 cut(s) 377
BssAI RCCGGY 1 cut(s) 708
BssECI CCNNGG 8 cut(s) 45, 135, 150, 269, 297, 312, 613, 750
BssMI GATC 5 cut(s) 91, 243, 380, 444, 754
BssNI GRCGYC 1 cut(s) 712
BssT1I CCWWGG 2 cut(s) 135, 150
Bst2UI CCWGG 1 cut(s) 751
Bst4CI ACNGT 3 cut(s) 11, 625, 812
Bst6I CTCTTC 2 cut(s) 659, 755
BstACI GRCGYC 1 cut(s) 712
BstBI TTCGAA 2 cut(s) 321, 494
BstC8I GCNNGC 1 cut(s) 710
BstDEI CTNAG 3 cut(s) 117, 252, 419
BstDSI CCRYGG 2 cut(s) 45, 312
BstFNI CGCG 1 cut(s) 103
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 5 cut(s) 94, 246, 383, 447, 757
BstMAI GTCTC 3 cut(s) 279, 420, 422
BstMBI GATC 5 cut(s) 91, 243, 380, 444, 754
BstMCI CGRYCG 1 cut(s) 94
BstNI CCWGG 1 cut(s) 751
BstPAI GACNNNNGTC 1 cut(s) 412
BstSCI CCNGG 3 cut(s) 296, 297, 749
BstSFI CTRYAG 1 cut(s) 453
BstUI CGCG 1 cut(s) 103
BstV2I GAAGAC 2 cut(s) 310, 540
BstXI CCANNNNNNTGG 2 cut(s) 157, 223
BsuRI GGCC 1 cut(s) 335
BtgI CCRYGG 2 cut(s) 45, 312
BtsIMutI CAGTG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 460
Cac8I GCNNGC 1 cut(s) 710
CciI TCATGA 1 cut(s) 469
CfoI GCGC 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 708
Cfr9I CCCGGG 1 cut(s) 297
CseI GACGC 1 cut(s) 701
CviAII CATG 5 cut(s) 55, 217, 241, 470, 684
DdeI CTNAG 3 cut(s) 117, 252, 419
DpnI GATC 5 cut(s) 93, 245, 382, 446, 756
DpnII GATC 5 cut(s) 91, 243, 380, 444, 754
DriI GACNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 2 cut(s) 659, 755
Eam1105I GACNNNNNGTC 1 cut(s) 47
EarI CTCTTC 2 cut(s) 659, 755
EciI GGCGGA 1 cut(s) 758
Ecl136II GAGCTC 1 cut(s) 580
Eco130I CCWWGG 2 cut(s) 135, 150
Eco24I GRGCYC 2 cut(s) 260, 582
Eco31I GGTCTC 1 cut(s) 279
Eco53kI GAGCTC 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 297
EcoICRI GAGCTC 1 cut(s) 580
EcoRII CCWGG 1 cut(s) 749
EcoT14I CCWWGG 2 cut(s) 135, 150
EcoT38I GRGCYC 2 cut(s) 260, 582
ErhI CCWWGG 2 cut(s) 135, 150
FaeI CATG 5 cut(s) 58, 220, 244, 473, 687
FaiI YATR 6 cut(s) 56, 218, 242, 471, 685, 773
FaqI GGGAC 1 cut(s) 362
FatI CATG 5 cut(s) 54, 216, 240, 469, 683
FbaI TGATCA 2 cut(s) 243, 444
FblI GTMKAC 1 cut(s) 51
FriOI GRGCYC 2 cut(s) 260, 582
FspBI CTAG 2 cut(s) 489, 699
GlaI GCGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 335
HapII CCGG 6 cut(s) 298, 364, 500, 588, 709, 716
HgaI GACGC 1 cut(s) 701
HhaI GCGC 1 cut(s) 105
Hin1I GRCGYC 1 cut(s) 712
Hin1II CATG 5 cut(s) 58, 220, 244, 473, 687
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HincII GTYRAC 2 cut(s) 52, 207
HindII GTYRAC 2 cut(s) 52, 207
HinfI GANTC 8 cut(s) 71, 328, 496, 503, 526, 536, 618, 746
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 6 cut(s) 298, 364, 500, 588, 709, 716
HphI GGTGA 2 cut(s) 175, 199
Hpy166II GTNNAC 2 cut(s) 52, 207
Hpy188I TCNGA 9 cut(s) 41, 255, 288, 380, 420, 617, 739, 759, 819
Hpy188III TCNNGA 8 cut(s) 15, 127, 347, 470, 500, 530, 588, 716
Hpy8I GTNNAC 2 cut(s) 52, 207
Hpy99I CGWCG 2 cut(s) 89, 92
HpyAV CCTTC 3 cut(s) 160, 334, 773
HpyCH4III ACNGT 3 cut(s) 11, 625, 812
HpyCH4IV ACGT 2 cut(s) 290, 723
HpyCH4V TGCA 1 cut(s) 455
HpyF3I CTNAG 3 cut(s) 117, 252, 419
HpySE526I ACGT 2 cut(s) 290, 723
Hsp92I GRCGYC 1 cut(s) 712
Hsp92II CATG 5 cut(s) 58, 220, 244, 473, 687
HspAI GCGC 1 cut(s) 103
Kpn2I TCCGGA 3 cut(s) 499, 587, 715
KroI GCCGGC 1 cut(s) 708
KroNI GCCGGC 1 cut(s) 710
Ksp22I TGATCA 2 cut(s) 243, 444
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 5 cut(s) 91, 243, 380, 444, 754
LmnI GCTCC 2 cut(s) 242, 390
LweI GCATC 1 cut(s) 255
MaeI CTAG 2 cut(s) 489, 699
MaeII ACGT 2 cut(s) 290, 723
MaeIII GTNAC 2 cut(s) 278, 541
MalI GATC 5 cut(s) 93, 245, 382, 446, 756
MboI GATC 5 cut(s) 91, 243, 380, 444, 754
MboII GAAGA 7 cut(s) 310, 535, 545, 565, 568, 646, 772
MhlI GDGCHC 4 cut(s) 239, 260, 521, 582
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 4 cut(s) 437, 463, 484, 583
MluNI TGGCCA 1 cut(s) 335
MlyI GAGTC 4 cut(s) 80, 497, 530, 755
MmeI TCCRAC 2 cut(s) 64, 717
Mox20I TGGCCA 1 cut(s) 335
MreI CGCCGGCG 1 cut(s) 708
MroI TCCGGA 3 cut(s) 499, 587, 715
MroNI GCCGGC 1 cut(s) 708
MroXI GAANNNNTTC 1 cut(s) 327
MscI TGGCCA 1 cut(s) 335
MseI TTAA 2 cut(s) 206, 829
MslI CAYNNNNRTG 1 cut(s) 59
Msp20I TGGCCA 1 cut(s) 335
MspI CCGG 6 cut(s) 298, 364, 500, 588, 709, 716
MspR9I CCNGG 3 cut(s) 298, 299, 751
MvaI CCWGG 1 cut(s) 751
MvnI CGCG 1 cut(s) 103
NaeI GCCGGC 1 cut(s) 710
NciI CCSGG 2 cut(s) 298, 299
NdeII GATC 5 cut(s) 91, 243, 380, 444, 754
NgoMIV GCCGGC 1 cut(s) 708
NlaIII CATG 5 cut(s) 58, 220, 244, 473, 687
NlaIV GGNNCC 2 cut(s) 13, 571
NmeAIII GCCGAG 1 cut(s) 485
NmuCI GTSAC 1 cut(s) 278
NspV TTCGAA 2 cut(s) 321, 494
PagI TCATGA 1 cut(s) 469
PaqCI CACCTGC 1 cut(s) 460
PdiI GCCGGC 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 327
PfeI GAWTC 4 cut(s) 328, 496, 526, 618
Ple19I CGATCG 1 cut(s) 94
PleI GAGTC 4 cut(s) 79, 497, 530, 754
PpsI GAGTC 4 cut(s) 79, 497, 530, 754
PshAI GACNNNNGTC 1 cut(s) 412
Psp124BI GAGCTC 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 723
Psp6I CCWGG 1 cut(s) 749
PspGI CCWGG 1 cut(s) 749
PspN4I GGNNCC 2 cut(s) 13, 571
PstI CTGCAG 1 cut(s) 457
PvuI CGATCG 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 59
SacI GAGCTC 1 cut(s) 582
SalI GTCGAC 1 cut(s) 50
SaqAI TTAA 2 cut(s) 206, 829
Sau3AI GATC 5 cut(s) 91, 243, 380, 444, 754
SchI GAGTC 4 cut(s) 80, 497, 530, 755
ScrFI CCNGG 3 cut(s) 298, 299, 751
SduI GDGCHC 4 cut(s) 239, 260, 521, 582
SfaNI GCATC 1 cut(s) 255
SfcI CTRYAG 1 cut(s) 453
SfuI TTCGAA 2 cut(s) 321, 494
SgrAI CRCCGGYG 1 cut(s) 708
SmaI CCCGGG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 59
SpeI ACTAGT 1 cut(s) 698
Sse9I AATT 4 cut(s) 437, 463, 484, 583
SsiI CCGC 1 cut(s) 743
SspMI CTAG 2 cut(s) 489, 699
SstI GAGCTC 1 cut(s) 582
StyD4I CCNGG 3 cut(s) 296, 297, 749
StyI CCWWGG 2 cut(s) 135, 150
TaaI ACNGT 3 cut(s) 11, 625, 812
TaiI ACGT 2 cut(s) 293, 726
TaqI TCGA 9 cut(s) 51, 69, 90, 126, 141, 321, 383, 398, 494
TaqII GACCGA 1 cut(s) 261
TasI AATT 4 cut(s) 437, 463, 484, 583
TfiI GAWTC 4 cut(s) 328, 496, 526, 618
Tru1I TTAA 2 cut(s) 206, 829
Tru9I TTAA 2 cut(s) 206, 829
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 1 cut(s) 278
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 4 cut(s) 17, 416, 450, 486
TspGWI ACGGA 1 cut(s) 403
TspMI CCCGGG 1 cut(s) 297
TspRI CASTG 1 cut(s) 628
XmaI CCCGGG 1 cut(s) 297
XmiI GTMKAC 1 cut(s) 51
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 2 cut(s) 489, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.