MD17G1087000.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0016374
Physical Location & Seq
Forward (+)
7169014 .. 7170439
1426 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1087000.v1.1.491

Sequence Viewer

Length: 843 bp
ATGATGAAAAACGTTTCGAAGTCAAAACCCAAGTTTCTGCACTGTTTCCGACCGGTGGACGTGGACATGGTGCTCCAGACCAAAGCTTCCCGGAGGAGACAGGTCCGGACTATTGAATCCAGGGAGGACAAGAAGGCGGCTCCGCTGACGAAAACAATGTCTCTGGACAGAGGGTGTTCTTCTCCGGCAGATTCTGAGAACTCGAATATGCCTCCGCATCCGAACAAAACTTTTTCCAAGGCGGTGAAAGCCGTAGTGTTCGAAACAATCTTGGCTAAGAGAGATCGTGATCGGAAAGTTTGCCGGCAGGACTCGTTCGGATCAAAGCGGTGTTTTTCGTTCAGAAATGAGGCGTCCCTGAATTTGGGAGGCGATGAGTCGGTGAAAGTAATTGAAGAAACAAAGCCAAATTCTGAGATGTCGTTACATTCTCGTTCTTCCAGTTCATCATTATCCGCATTATCTTCTTCGAGTTCGGTTTCGGAATCCGAAAGGTTGTCCAAAACTCTCTCGGACCCGACGAAACAGAGCCTCGGGAATCCTAACAACCCCGCCGCGAAACCGAAGAACACGAAAGTGGGGTCCTACTGTTTCAACTCTGGAACATATTTTCTTCTCATCAGCCTTGCAGTGACGGTATTTTGGGGCAAGGCGATTGCAATCCTTGTCTCATCAATTTGGATCTACTTTTTTCCGTGGCAGAGTTCGAGTACAATCTCGCCGGAATATGTGAGGAGGTGGTCGGAGGCGGAGTGTAAGGATAATAACAAGAGGGTACTTATGGAAGGGTTTATTGATAGGAAGAACCACCACCACCGCCACCAGACAGAGAGGGGGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

281

Amino Acids

31.57

Weight (kDa)

9.83

Isoelectric Point (pI)

64.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016374)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44330
malus_domestica MD09G1098800.v1.1 MD17G1087000.v1.1
prunus_persica Prupe.3G227700_v2.0.a1
pyrus_communis pycom09g02240 pycom17g08420
rosa_chinensis RchiOBHm_Chr2g0161211
rosa_laevigata RLG00000021268
rosa_multiflora Rmu_sc0006420.1_g000048
rosa_roxburghii Rroxscaffold_2G00089020
rosa_samantha Rh2AG553900 Rh2BG567400 Rh2CG537700 Rh2DG576800
rosa_wichuraiana Rw2G045820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 557
AccIII TCCGGA 1 cut(s) 105
AclI AACGTT 1 cut(s) 12
AclWI GGATC 2 cut(s) 328, 689
AcsI RAATTY 2 cut(s) 361, 409
AcyI GRCGYC 1 cut(s) 353
AfaI GTAC 2 cut(s) 712, 777
AfiI CCNNNNNNNGG 2 cut(s) 55, 364
AgeI ACCGGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 116, 395, 595
AjiI CACGTC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 119
AleI CACNNNNGTG 1 cut(s) 575
AluBI AGCT 1 cut(s) 86
AluI AGCT 1 cut(s) 86
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 3 cut(s) 91, 165, 673
AlwI GGATC 2 cut(s) 328, 689
AlwNI CAGNNNCTG 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 533
Aor13HI TCCGGA 1 cut(s) 105
ApoI RAATTY 2 cut(s) 361, 409
ArsI GACNNNNNNTTYG 4 cut(s) 143, 175, 566, 598
AsiGI ACCGGT 1 cut(s) 52
AspS9I GGNCC 3 cut(s) 103, 514, 582
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 2 cut(s) 256, 394
AsuII TTCGAA 2 cut(s) 17, 261
AvaI CYCGRG 1 cut(s) 533
AvaII GGWCC 3 cut(s) 103, 514, 582
Bbv12I GWGCWC 1 cut(s) 75
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 121
BcnI CCSGG 1 cut(s) 91
BcoDI GTCTC 3 cut(s) 91, 165, 673
BisI GCNGC 2 cut(s) 138, 555
BlsI GCNGC 2 cut(s) 139, 556
Bme1390I CCNGG 2 cut(s) 91, 121
Bme18I GGWCC 3 cut(s) 103, 514, 582
BmeT110I CYCGRG 1 cut(s) 533
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 3 cut(s) 103, 514, 582
BmiI GGNNCC 3 cut(s) 141, 516, 583
BmrFI CCNGG 2 cut(s) 91, 121
BmsI GCATC 1 cut(s) 226
BpmI CTGGAG 1 cut(s) 59
Bpu14I TTCGAA 2 cut(s) 17, 261
BpuMI CCSGG 1 cut(s) 91
BsaBI GATNNNNATC 2 cut(s) 288, 659
BsaHI GRCGYC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 120, 237, 532, 695
BsaWI WCCGGW 2 cut(s) 52, 105
BsaXI ACNNNNNCTCC 2 cut(s) 737, 767
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 364
Bse118I RCCGGY 2 cut(s) 52, 303
Bse1I ACTGG 1 cut(s) 441
Bse8I GATNNNNATC 2 cut(s) 288, 659
BseAI TCCGGA 1 cut(s) 105
BseBI CCWGG 1 cut(s) 121
BseDI CCNNGG 4 cut(s) 120, 237, 532, 695
BseGI GGATG 1 cut(s) 217
BseJI GATNNNNATC 2 cut(s) 288, 659
BseLI CCNNNNNNNGG 2 cut(s) 55, 364
BseMII CTCAG 2 cut(s) 186, 405
BseNI ACTGG 1 cut(s) 441
BseRI GAGGAG 2 cut(s) 109, 748
BsgI GTGCAG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 557
Bsh1285I CGRYCG 1 cut(s) 53
BshTI ACCGGT 1 cut(s) 52
BsiEI CGRYCG 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 533
BsiSI CCGG 6 cut(s) 53, 91, 106, 185, 304, 722
BslFI GGGAC 1 cut(s) 340
BslI CCNNNNNNNGG 2 cut(s) 55, 364
BsmAI GTCTC 3 cut(s) 91, 165, 673
BsmFI GGGAC 1 cut(s) 340
BsoBI CYCGRG 1 cut(s) 533
Bsp119I TTCGAA 2 cut(s) 17, 261
Bsp1286I GDGCHC 1 cut(s) 75
Bsp13I TCCGGA 1 cut(s) 105
Bsp143I GATC 4 cut(s) 283, 289, 320, 681
BspCNI CTCAG 2 cut(s) 187, 406
BspEI TCCGGA 1 cut(s) 105
BspFNI CGCG 1 cut(s) 557
BspLI GGNNCC 3 cut(s) 141, 516, 583
BspPI GGATC 2 cut(s) 328, 689
BspT104I TTCGAA 2 cut(s) 17, 261
BsrFI RCCGGY 2 cut(s) 52, 303
BsrI ACTGG 1 cut(s) 441
BssAI RCCGGY 2 cut(s) 52, 303
BssECI CCNNGG 4 cut(s) 120, 237, 532, 695
BssMI GATC 4 cut(s) 283, 289, 320, 681
BssNI GRCGYC 1 cut(s) 353
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 121
Bst4CI ACNGT 3 cut(s) 44, 590, 637
BstACI GRCGYC 1 cut(s) 353
BstBI TTCGAA 2 cut(s) 17, 261
BstC8I GCNNGC 1 cut(s) 305
BstDEI CTNAG 3 cut(s) 195, 276, 414
BstDSI CCRYGG 1 cut(s) 695
BstF5I GGATG 1 cut(s) 217
BstFNI CGCG 1 cut(s) 557
BstKTI GATC 4 cut(s) 286, 292, 323, 684
BstMAI GTCTC 3 cut(s) 91, 165, 673
BstMBI GATC 4 cut(s) 283, 289, 320, 681
BstMCI CGRYCG 1 cut(s) 53
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstNI CCWGG 1 cut(s) 121
BstSCI CCNGG 2 cut(s) 89, 119
BstUI CGCG 1 cut(s) 557
BstX2I RGATCY 1 cut(s) 681
BstYI RGATCY 1 cut(s) 681
BtgI CCRYGG 1 cut(s) 695
BtgZI GCGATG 1 cut(s) 387
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 217
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 2 cut(s) 40, 636
Cac8I GCNNGC 1 cut(s) 305
CaiI CAGNNNCTG 1 cut(s) 194
Cfr10I RCCGGY 2 cut(s) 52, 303
Cfr13I GGNCC 3 cut(s) 103, 514, 582
CseI GACGC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 711, 776
CspAI ACCGGT 1 cut(s) 52
CviAII CATG 1 cut(s) 67
CviJI RGCY 7 cut(s) 86, 140, 251, 275, 406, 531, 624
CviKI_1 RGCY 7 cut(s) 86, 140, 251, 275, 406, 531, 624
CviQI GTAC 2 cut(s) 711, 776
DdeI CTNAG 3 cut(s) 195, 276, 414
DpnI GATC 4 cut(s) 285, 291, 322, 683
DpnII GATC 4 cut(s) 283, 289, 320, 681
EciI GGCGGA 1 cut(s) 764
Eco130I CCWWGG 1 cut(s) 237
Eco47I GGWCC 3 cut(s) 103, 514, 582
Eco88I CYCGRG 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 237
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 1 cut(s) 70
FaiI YATR 5 cut(s) 68, 209, 607, 729, 782
FaqI GGGAC 1 cut(s) 340
FatI CATG 1 cut(s) 66
FauI CCCGC 1 cut(s) 559
Fnu4HI GCNGC 2 cut(s) 138, 555
FokI GGATG 1 cut(s) 204
Fsp4HI GCNGC 2 cut(s) 138, 555
GluI GCNGC 2 cut(s) 138, 555
GsuI CTGGAG 1 cut(s) 59
HapII CCGG 6 cut(s) 53, 91, 106, 185, 304, 722
HgaI GACGC 1 cut(s) 342
Hin1I GRCGYC 1 cut(s) 353
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 84
HinfI GANTC 6 cut(s) 116, 191, 311, 377, 485, 538
HpaII CCGG 6 cut(s) 53, 91, 106, 185, 304, 722
HphI GGTGA 2 cut(s) 256, 394
Hpy166II GTNNAC 2 cut(s) 58, 64
Hpy188III TCNNGA 6 cut(s) 76, 106, 164, 287, 535, 600
Hpy8I GTNNAC 2 cut(s) 58, 64
Hpy99I CGWCG 1 cut(s) 523
HpyAV CCTTC 2 cut(s) 127, 779
HpyCH4III ACNGT 3 cut(s) 44, 590, 637
HpyCH4IV ACGT 2 cut(s) 12, 60
HpyCH4V TGCA 3 cut(s) 40, 629, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 3 cut(s) 195, 276, 414
HpySE526I ACGT 2 cut(s) 12, 60
Hsp92I GRCGYC 1 cut(s) 353
Hsp92II CATG 1 cut(s) 70
Kpn2I TCCGGA 1 cut(s) 105
KroI GCCGGC 1 cut(s) 303
KroNI GCCGGC 1 cut(s) 305
Kzo9I GATC 4 cut(s) 283, 289, 320, 681
LmnI GCTCC 2 cut(s) 78, 145
LweI GCATC 1 cut(s) 226
MaeII ACGT 2 cut(s) 12, 60
MaeIII GTNAC 2 cut(s) 423, 631
MalI GATC 4 cut(s) 285, 291, 322, 683
MboI GATC 4 cut(s) 283, 289, 320, 681
MboII GAAGA 8 cut(s) 171, 407, 429, 456, 459, 577, 605, 814
MflI RGATCY 1 cut(s) 681
MhlI GDGCHC 1 cut(s) 75
MluCI AATT 4 cut(s) 361, 390, 409, 675
MlyI GAGTC 2 cut(s) 305, 386
MmeI TCCRAC 2 cut(s) 73, 723
MroI TCCGGA 1 cut(s) 105
MroNI GCCGGC 1 cut(s) 303
MseI TTAA 1 cut(s) 841
MslI CAYNNNNRTG 1 cut(s) 575
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 6 cut(s) 53, 91, 106, 185, 304, 722
MspR9I CCNGG 2 cut(s) 91, 121
MvaI CCWGG 1 cut(s) 121
MvnI CGCG 1 cut(s) 557
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 305
NciI CCSGG 1 cut(s) 91
NdeII GATC 4 cut(s) 283, 289, 320, 681
NgoMIV GCCGGC 1 cut(s) 303
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 3 cut(s) 141, 516, 583
NmuCI GTSAC 1 cut(s) 631
NspV TTCGAA 2 cut(s) 17, 261
OliI CACNNNNGTG 1 cut(s) 575
PcsI WCGNNNNNNNCGW 1 cut(s) 518
PdiI GCCGGC 1 cut(s) 305
PfeI GAWTC 4 cut(s) 116, 191, 485, 538
PfoI TCCNGGA 1 cut(s) 89
PinAI ACCGGT 1 cut(s) 52
PkrI GCNGC 2 cut(s) 139, 556
PleI GAGTC 2 cut(s) 305, 385
PpsI GAGTC 2 cut(s) 305, 385
PpuMI RGGWCCY 1 cut(s) 582
Psp1406I AACGTT 1 cut(s) 12
Psp5II RGGWCCY 1 cut(s) 582
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 3 cut(s) 141, 516, 583
PspPI GGNCC 3 cut(s) 103, 514, 582
PspPPI RGGWCCY 1 cut(s) 582
PstNI CAGNNNCTG 1 cut(s) 194
PsuI RGATCY 1 cut(s) 681
RsaI GTAC 2 cut(s) 712, 777
RsaNI GTAC 2 cut(s) 711, 776
RseI CAYNNNNRTG 1 cut(s) 575
SaqAI TTAA 1 cut(s) 841
SatI GCNGC 2 cut(s) 138, 555
Sau3AI GATC 4 cut(s) 283, 289, 320, 681
Sau96I GGNCC 3 cut(s) 103, 514, 582
SchI GAGTC 2 cut(s) 305, 386
ScrFI CCNGG 2 cut(s) 91, 121
SduI GDGCHC 1 cut(s) 75
SetI ASST 6 cut(s) 15, 63, 88, 105, 497, 740
SfaNI GCATC 1 cut(s) 226
SfuI TTCGAA 2 cut(s) 17, 261
SinI GGWCC 3 cut(s) 103, 514, 582
SmiMI CAYNNNNRTG 1 cut(s) 575
Sse9I AATT 4 cut(s) 361, 390, 409, 675
StyD4I CCNGG 2 cut(s) 89, 119
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 3 cut(s) 44, 590, 637
TaiI ACGT 2 cut(s) 15, 63
TaqI TCGA 5 cut(s) 17, 203, 261, 470, 707
TasI AATT 4 cut(s) 361, 390, 409, 675
TatI WGTACW 1 cut(s) 710
TauI GCSGC 2 cut(s) 140, 557
TfiI GAWTC 4 cut(s) 116, 191, 485, 538
Tru1I TTAA 1 cut(s) 841
Tru9I TTAA 1 cut(s) 841
TscAI CASTG 2 cut(s) 47, 636
TseFI GTSAC 1 cut(s) 631
Tsp45I GTSAC 1 cut(s) 631
TspDTI ATGAA 2 cut(s) 20, 435
TspGWI ACGGA 1 cut(s) 684
TspRI CASTG 2 cut(s) 47, 636
VpaK11BI GGWCC 3 cut(s) 103, 514, 582
XapI RAATTY 2 cut(s) 361, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.