FvH4_6g44541

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018063
Physical Location & Seq
Forward (+)
34304076 .. 34304608
533 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44541.t1

Sequence Viewer

Length: 414 bp
ATGTCTACCCTAAGCTTGGCCAGCAGCGGTAGCATTGCTACTCAAACTTCTGATCTGGATGTTAAAACACGAACAGCAGATTACAAGCCCAGCATTTGGAGTTACGAGTTTCTTCAATCGTTACAGGAAGAACAATACGAAGATGATAGGTGGACGTCGTTGGAGGGGGATGTGAAACATATTATTGATTATGATAATGATGCCAAGTCAGTTAAGACTACACTTGAATTGATTGATGATATCCAACGATTAGGTTTGGGACATCGATTCGAGGCCAGTATAACAGGAGCCCTTGACAGAATTATGAAGAATCTTGACCAAATAACAGACGAGGATACCCCTAGTCTCCACCTCACTGCTCTCAGCTTCAGGCTCCTTCGACAGCGTGGGTTTCAAGTCTCCCAAGGTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

4.65

Isoelectric Point (pI)

36.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 33 - 135 4.5e-21 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 158
AccB7I CCANNNNNTGG 1 cut(s) 96
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 27
AcoI YGGCCR 1 cut(s) 18
AcuI CTGAAG 1 cut(s) 352
AcyI GRCGYC 1 cut(s) 155
AfiI CCNNNNNNNGG 2 cut(s) 16, 96
AgsI TTSAA 3 cut(s) 116, 227, 395
AluBI AGCT 2 cut(s) 15, 366
AluI AGCT 2 cut(s) 15, 366
Alw26I GTCTC 2 cut(s) 350, 403
AoxI GGCC 2 cut(s) 18, 273
ApeKI GCWGC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 20
BanII GRGCYC 1 cut(s) 292
BbvI GCAGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 350, 403
BfaI CTAG 1 cut(s) 342
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 1 cut(s) 25
BlsI GCNGC 1 cut(s) 26
BmiI GGNNCC 2 cut(s) 289, 374
BmsI GCATC 1 cut(s) 190
Bpu10I CCTNAGC 1 cut(s) 11
Bsa29I ATCGAT 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 403
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 96
Bse1I ACTGG 1 cut(s) 276
Bse3DI GCAATG 1 cut(s) 33
BseCI ATCGAT 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 403
BseGI GGATG 2 cut(s) 64, 175
BseLI CCNNNNNNNGG 2 cut(s) 16, 96
BseMI GCAATG 1 cut(s) 33
BseMII CTCAG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 1 cut(s) 36
BseYI CCCAGC 1 cut(s) 89
BshFI GGCC 2 cut(s) 20, 275
BshVI ATCGAT 1 cut(s) 265
BslFI GGGAC 1 cut(s) 273
BslI CCNNNNNNNGG 2 cut(s) 16, 96
BsmAI GTCTC 2 cut(s) 350, 403
BsmFI GGGAC 1 cut(s) 273
BsnI GGCC 2 cut(s) 20, 275
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 27
BspANI GGCC 2 cut(s) 20, 275
BspCNI CTCAG 1 cut(s) 375
BspDI ATCGAT 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 289, 374
BsrDI GCAATG 1 cut(s) 33
BsrI ACTGG 1 cut(s) 276
BssECI CCNNGG 1 cut(s) 403
BssMI GATC 1 cut(s) 52
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 1 cut(s) 403
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 2 cut(s) 11, 362
BstF5I GGATG 2 cut(s) 64, 175
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 350, 403
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstV1I GCAGC 1 cut(s) 36
Bsu15I ATCGAT 1 cut(s) 265
BsuI GTATCC 1 cut(s) 328
BsuRI GGCC 2 cut(s) 20, 275
BsuTUI ATCGAT 1 cut(s) 265
BtsCI GGATG 2 cut(s) 64, 175
BtsI GCAGTG 1 cut(s) 354
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 1 cut(s) 22
ClaI ATCGAT 1 cut(s) 265
CviJI RGCY 7 cut(s) 15, 20, 88, 275, 290, 366, 373
CviKI_1 RGCY 7 cut(s) 15, 20, 88, 275, 290, 366, 373
DdeI CTNAG 2 cut(s) 11, 362
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EaeI YGGCCR 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 403
Eco24I GRGCYC 1 cut(s) 292
Eco32I GATATC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 352
EcoRV GATATC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 403
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 403
FaiI YATR 4 cut(s) 180, 192, 281, 305
FaqI GGGAC 1 cut(s) 273
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 2 cut(s) 71, 182
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 1 cut(s) 25
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 25
GsaI CCCAGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 20, 275
Hin1I GRCGYC 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 13
HinfI GANTC 2 cut(s) 267, 310
Hpy166II GTNNAC 2 cut(s) 6, 153
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 56, 314
Hpy8I GTNNAC 2 cut(s) 6, 153
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 1 cut(s) 386
HpyCH4IV ACGT 1 cut(s) 155
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 2 cut(s) 11, 362
HpySE526I ACGT 1 cut(s) 155
Hsp92I GRCGYC 1 cut(s) 155
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 2 cut(s) 287, 378
LpnPI CCDG 7 cut(s) 34, 41, 103, 110, 270, 289, 355
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 101, 120
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 104, 140, 152, 319
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 20
MluCI AATT 3 cut(s) 227, 300, 409
MluNI TGGCCA 1 cut(s) 20
MmeI TCCRAC 2 cut(s) 141, 268
MnlI CCTC 4 cut(s) 157, 265, 325, 362
Mox20I TGGCCA 1 cut(s) 20
MscI TGGCCA 1 cut(s) 20
MseI TTAA 3 cut(s) 63, 213, 412
Msp20I TGGCCA 1 cut(s) 20
MspA1I CMGCKG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 1 cut(s) 52
NlaIV GGNNCC 2 cut(s) 289, 374
PfeI GAWTC 2 cut(s) 267, 310
PflMI CCANNNNNTGG 1 cut(s) 96
PkrI GCNGC 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 289, 374
SaqAI TTAA 3 cut(s) 63, 213, 412
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 292
SetI ASST 7 cut(s) 17, 152, 158, 256, 354, 368, 409
SfaNI GCATC 1 cut(s) 190
Sse9I AATT 3 cut(s) 227, 300, 409
SsiI CCGC 1 cut(s) 27
SspMI CTAG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 403
TaiI ACGT 1 cut(s) 158
TaqI TCGA 3 cut(s) 265, 270, 379
TasI AATT 3 cut(s) 227, 300, 409
TfiI GAWTC 2 cut(s) 267, 310
Tru1I TTAA 3 cut(s) 63, 213, 412
Tru9I TTAA 3 cut(s) 63, 213, 412
TscAI CASTG 1 cut(s) 361
TseI GCWGC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 320
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 1 cut(s) 342
ZraI GACGTC 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.