Rh6CG047100

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0018063
Physical Location & Seq
Forward (+)
4656029 .. 4656532
504 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG047100.1

Sequence Viewer

Length: 417 bp
ATGTCTACCGAACGCTTAGCTACCGCTGCTCGAACTTCACATCTGGATGGTAAAAGACTGACAGCAAATTACAATCCAAACATGTGGAGTTATGATTTTATTCAATCGTTACAGATTGATGATCATAATCATGAAGAAGACAAAGATAATAGGTGGAAGTTGTTGGAGGAGGATGTGAAAAATATGATTGATTATGATAATGATGCACAATCGCTAGTCACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCTAGTATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAAACGAGGATACTCCAAGTCTCCACCTCAATGCTCTCAGCTTCAGGCTCCTTAGACAGCATGGGTTTCAAGTCTCCCAAGGTAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

138

Amino Acids

15.99

Weight (kDa)

4.99

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 28 - 136 1.1e-23 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AciI CCGC 1 cut(s) 24
AcuI CTGAAG 1 cut(s) 355
AfiI CCNNNNNNNGG 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 81
AgsI TTSAA 4 cut(s) 104, 230, 310, 398
AluBI AGCT 2 cut(s) 20, 369
AluI AGCT 2 cut(s) 20, 369
Alw26I GTCTC 2 cut(s) 353, 406
ApeKI GCWGC 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 41
BciVI GTATCC 1 cut(s) 331
BclI TGATCA 1 cut(s) 121
BcoDI GTCTC 2 cut(s) 353, 406
BfaI CTAG 2 cut(s) 215, 279
BfuI GTATCC 1 cut(s) 331
BisI GCNGC 1 cut(s) 27
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 28
BmiI GGNNCC 1 cut(s) 377
BmsI GCATC 1 cut(s) 193
BpiI GAAGAC 1 cut(s) 144
Bpu1102I GCTNAGC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 406
Bsc4I CCNNNNNNNGG 1 cut(s) 274
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 1 cut(s) 406
BseGI GGATG 3 cut(s) 52, 178, 243
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 1 cut(s) 274
BseMII CTCAG 1 cut(s) 379
BseRI GAGGAG 1 cut(s) 182
BseXI GCAGC 1 cut(s) 13
BslFI GGGAC 1 cut(s) 276
BslI CCNNNNNNNGG 1 cut(s) 274
BsmAI GTCTC 2 cut(s) 353, 406
BsmFI GGGAC 1 cut(s) 276
Bsp143I GATC 1 cut(s) 121
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 24
BspCNI CTCAG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 130
BspLI GGNNCC 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 406
BssMI GATC 1 cut(s) 121
BssT1I CCWWGG 1 cut(s) 406
BstDEI CTNAG 3 cut(s) 16, 365, 380
BstF5I GGATG 3 cut(s) 52, 178, 243
BstKTI GATC 1 cut(s) 124
BstMAI GTCTC 2 cut(s) 353, 406
BstMBI GATC 1 cut(s) 121
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 144
BstXI CCANNNNNNTGG 1 cut(s) 84
BsuI GTATCC 1 cut(s) 331
BtsCI GGATG 3 cut(s) 52, 178, 243
CciI TCATGA 1 cut(s) 130
CviAII CATG 3 cut(s) 82, 131, 389
CviJI RGCY 5 cut(s) 20, 278, 293, 369, 376
CviKI_1 RGCY 5 cut(s) 20, 278, 293, 369, 376
DdeI CTNAG 3 cut(s) 16, 365, 380
DpnI GATC 1 cut(s) 123
DpnII GATC 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 355
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 3 cut(s) 85, 134, 392
FaiI YATR 8 cut(s) 83, 93, 126, 132, 185, 195, 284, 390
FaqI GGGAC 1 cut(s) 276
FatI CATG 3 cut(s) 81, 130, 388
FbaI TGATCA 1 cut(s) 121
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 3 cut(s) 59, 185, 230
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 2 cut(s) 215, 279
GluI GCNGC 1 cut(s) 27
Hin1II CATG 3 cut(s) 85, 134, 392
HinfI GANTC 2 cut(s) 270, 313
Hpy166II GTNNAC 1 cut(s) 6
Hpy188III TCNNGA 3 cut(s) 44, 131, 317
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 3 cut(s) 16, 365, 380
Hsp92II CATG 3 cut(s) 85, 134, 392
Ksp22I TGATCA 1 cut(s) 121
Kzo9I GATC 1 cut(s) 121
LmnI GCTCC 1 cut(s) 381
LpnPI CCDG 2 cut(s) 29, 358
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 193
MaeI CTAG 2 cut(s) 215, 279
MaeIII GTNAC 2 cut(s) 108, 217
MalI GATC 1 cut(s) 123
MboI GATC 1 cut(s) 121
MboII GAAGA 3 cut(s) 146, 149, 322
MluCI AATT 2 cut(s) 67, 230
MmeI TCCRAC 2 cut(s) 144, 271
MnlI CCTC 5 cut(s) 160, 163, 268, 328, 365
MslI CAYNNNNRTG 3 cut(s) 45, 129, 357
MspA1I CMGCKG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 1 cut(s) 121
NlaIII CATG 3 cut(s) 85, 134, 392
NlaIV GGNNCC 1 cut(s) 377
NmuCI GTSAC 1 cut(s) 217
NspI RCATGY 1 cut(s) 85
PagI TCATGA 1 cut(s) 130
PciI ACATGT 1 cut(s) 81
PfeI GAWTC 2 cut(s) 270, 313
PkrI GCNGC 1 cut(s) 28
PscI ACATGT 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 377
RseI CAYNNNNRTG 3 cut(s) 45, 129, 357
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 121
SetI ASST 6 cut(s) 22, 155, 259, 357, 371, 412
SfaNI GCATC 1 cut(s) 193
SmiMI CAYNNNNRTG 3 cut(s) 45, 129, 357
Sse9I AATT 2 cut(s) 67, 230
SsiI CCGC 1 cut(s) 24
SspMI CTAG 2 cut(s) 215, 279
StyI CCWWGG 1 cut(s) 406
TaqI TCGA 2 cut(s) 31, 273
TasI AATT 2 cut(s) 67, 230
TfiI GAWTC 2 cut(s) 270, 313
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 147
XceI RCATGY 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 2 cut(s) 215, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.