Rh2AG549200

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018063
Physical Location & Seq
Reverse (-)
77902323 .. 77950459
48137 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG549200.1

Sequence Viewer

Length: 450 bp
ATGTCTACCCAATGCTTAGCAAGCAGCGGTAGCACTGCCGCTCAAACTTCAAATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAGTCGTTACAGATTGATGATCGTAATCATGAAGAAGTATACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAAAAGAAACCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAGACGAGGATACTCCAAATCTTCACCTCATTGCTCTAAGCTTTAGGCTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGGACAGGCTAACATGCATTTTGAAGGGGGAATGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

149

Amino Acids

16.99

Weight (kDa)

4.91

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 137 8.8e-22 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 2 cut(s) 27, 39
AclWI GGATC 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 98
AfiI CCNNNNNNNGG 2 cut(s) 277, 415
AgsI TTSAA 5 cut(s) 51, 233, 313, 401, 434
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Alw26I GTCTC 2 cut(s) 215, 409
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 24
AsuHPI GGTGA 1 cut(s) 347
BbvI GCAGC 1 cut(s) 36
BccI CCATC 1 cut(s) 172
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 2 cut(s) 215, 409
BfaI CTAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 2 cut(s) 25, 39
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 26, 40
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 2 cut(s) 277, 415
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 64, 246
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 2 cut(s) 277, 415
BseMI GCAATG 1 cut(s) 360
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 197, 371
BseXI GCAGC 1 cut(s) 36
BshFI GGCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 2 cut(s) 277, 415
BsmAI GTCTC 2 cut(s) 215, 409
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 133, 187
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 27, 39
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 396
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 1 cut(s) 195
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 360
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 2 cut(s) 133, 187
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 409
Bst1107I GTATAC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 16, 368, 383
BstF5I GGATG 2 cut(s) 64, 246
BstKTI GATC 2 cut(s) 136, 190
BstMAI GTCTC 2 cut(s) 215, 409
BstMBI GATC 2 cut(s) 133, 187
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstNSI RCATGY 1 cut(s) 427
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 64, 246
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 142
CviAII CATG 3 cut(s) 143, 392, 424
CviJI RGCY 5 cut(s) 88, 281, 372, 379, 419
CviKI_1 RGCY 5 cut(s) 88, 281, 372, 379, 419
DdeI CTNAG 3 cut(s) 16, 368, 383
DpnI GATC 2 cut(s) 135, 189
DpnII GATC 2 cut(s) 133, 187
Eco130I CCWWGG 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 429
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 3 cut(s) 146, 395, 427
FaiI YATR 6 cut(s) 144, 154, 200, 287, 393, 425
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 142, 391, 423
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 2 cut(s) 25, 39
FokI GGATG 2 cut(s) 71, 233
Fsp4HI GCNGC 2 cut(s) 25, 39
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 25, 39
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 3 cut(s) 146, 395, 427
HindIII AAGCTT 1 cut(s) 370
HinfI GANTC 3 cut(s) 212, 273, 316
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188I TCNGA 2 cut(s) 192, 386
Hpy188III TCNNGA 3 cut(s) 56, 143, 320
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyAV CCTTC 1 cut(s) 428
HpyCH4V TGCA 2 cut(s) 209, 427
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 3 cut(s) 16, 368, 383
Hsp92II CATG 3 cut(s) 146, 395, 427
Kzo9I GATC 2 cut(s) 133, 187
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 3 cut(s) 41, 295, 401
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 120, 213
MalI GATC 2 cut(s) 135, 189
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 133, 187
MboII GAAGA 4 cut(s) 104, 158, 325, 344
MflI RGATCY 1 cut(s) 187
MluCI AATT 3 cut(s) 79, 233, 445
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 6 cut(s) 175, 178, 271, 331, 368, 392
Mph1103I ATGCAT 1 cut(s) 429
MseI TTAA 1 cut(s) 63
MspA1I CMGCKG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 2 cut(s) 133, 187
NlaIII CATG 3 cut(s) 146, 395, 427
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 213
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 427
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 2 cut(s) 273, 316
PkrI GCNGC 2 cut(s) 26, 40
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 2 cut(s) 25, 39
Sau3AI GATC 2 cut(s) 133, 187
SchI GAGTC 1 cut(s) 221
SetI ASST 4 cut(s) 170, 262, 360, 374
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 3 cut(s) 79, 233, 445
SsiI CCGC 2 cut(s) 27, 39
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 409
TaqI TCGA 1 cut(s) 276
TasI AATT 3 cut(s) 79, 233, 445
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 2 cut(s) 273, 316
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 1 cut(s) 40
XceI RCATGY 1 cut(s) 427
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 1 cut(s) 218
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.