Rroxscaffold_2G00089610

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018063
Physical Location & Seq
Forward (+)
11549107 .. 11551547
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089610.1

Sequence Viewer

Length: 585 bp
ATGTCTATCCAATGCTTAGCGAGTAGCAGTAGCACTGCTGCTCAAACTTCACATTTGGATGTTAAAAGACCGACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCGGTCGTTACAGATTGATGATCATAATTATGAGGAAGTATATGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAGTATAAAAGAAACCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAGACAAGGATACTCCAAGTCTTCACCTCACTGCTCTAAGCTTCAGGCTCCTCAGACATCATAGGTTTCAAGTCTCCCAAGATATTTTCAGAATTTTCATGGACTGTGACGGTAACTTTAAGGATTGCCTTTGCAAAGATGTCAAAGGCTTGCTAAATCTATATGAAGCTTCATTCCTTGGCATTGAAGGAGAAACCCTCTTGGATGAGGCTCTTGCATTCACCAGCATGCACCTAAAGAACCTCGATCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

194

Amino Acids

22.32

Weight (kDa)

4.93

Isoelectric Point (pI)

38.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 191 9.7e-46 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 423
AcuI CTGAAG 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 4 cut(s) 233, 313, 401, 518
AluBI AGCT 2 cut(s) 372, 500
AluI AGCT 2 cut(s) 372, 500
Alw26I GTCTC 2 cut(s) 215, 409
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 423
AsuHPI GGTGA 2 cut(s) 347, 544
BbsI GAAGAC 1 cut(s) 344
BbvI GCAGC 1 cut(s) 25
BccI CCATC 1 cut(s) 172
BciVI GTATCC 1 cut(s) 334
BclI TGATCA 1 cut(s) 133
BcoDI GTCTC 2 cut(s) 215, 409
BfaI CTAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 1 cut(s) 39
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 196
BpiI GAAGAC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 513, 545
Bpu1102I GCTNAGC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 508
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 1 cut(s) 282
BseDI CCNNGG 1 cut(s) 508
BseGI GGATG 3 cut(s) 64, 246, 541
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 197, 371
BseXI GCAGC 1 cut(s) 25
Bsh1285I CGRYCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 281
BsiEI CGRYCG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 215, 409
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 548
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 133, 187, 577
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 396
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 1 cut(s) 195
BsrI ACTGG 1 cut(s) 282
BssECI CCNNGG 1 cut(s) 508
BssMI GATC 3 cut(s) 133, 187, 577
BssT1I CCWWGG 1 cut(s) 508
Bst4CI ACNGT 2 cut(s) 437, 443
BstC8I GCNNGC 2 cut(s) 482, 560
BstDEI CTNAG 3 cut(s) 16, 368, 383
BstF5I GGATG 3 cut(s) 64, 246, 541
BstKTI GATC 3 cut(s) 136, 190, 580
BstMAI GTCTC 2 cut(s) 215, 409
BstMBI GATC 3 cut(s) 133, 187, 577
BstMCI CGRYCG 1 cut(s) 119
BstNSI RCATGY 1 cut(s) 562
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 344
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 187
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 3 cut(s) 64, 246, 541
BtsI GCAGTG 2 cut(s) 33, 360
BtsIMutI CAGTG 2 cut(s) 33, 360
Cac8I GCNNGC 2 cut(s) 482, 560
CviAII CATG 2 cut(s) 430, 559
CviJI RGCY 7 cut(s) 88, 281, 372, 379, 480, 500, 542
CviKI_1 RGCY 7 cut(s) 88, 281, 372, 379, 480, 500, 542
DdeI CTNAG 3 cut(s) 16, 368, 383
DpnI GATC 3 cut(s) 135, 189, 579
DpnII GATC 3 cut(s) 133, 187, 577
Eco130I CCWWGG 1 cut(s) 508
Eco57I CTGAAG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 508
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 2 cut(s) 433, 562
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 279
FatI CATG 2 cut(s) 429, 558
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 3 cut(s) 71, 233, 548
Fsp4HI GCNGC 1 cut(s) 39
FspBI CTAG 1 cut(s) 218
GluI GCNGC 1 cut(s) 39
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 2 cut(s) 433, 562
HindIII AAGCTT 2 cut(s) 370, 498
HinfI GANTC 3 cut(s) 212, 273, 316
HphI GGTGA 2 cut(s) 347, 544
Hpy188I TCNGA 3 cut(s) 192, 386, 422
Hpy188III TCNNGA 1 cut(s) 320
HpyAV CCTTC 1 cut(s) 512
HpyCH4III ACNGT 2 cut(s) 437, 443
HpyCH4V TGCA 4 cut(s) 209, 465, 548, 562
HpyF3I CTNAG 3 cut(s) 16, 368, 383
Hsp92II CATG 2 cut(s) 433, 562
Ksp22I TGATCA 1 cut(s) 133
Kzo9I GATC 3 cut(s) 133, 187, 577
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 3 cut(s) 295, 361, 568
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 4 cut(s) 120, 213, 437, 443
MalI GATC 3 cut(s) 135, 189, 579
MboI GATC 3 cut(s) 133, 187, 577
MboII GAAGA 3 cut(s) 104, 325, 344
MflI RGATCY 1 cut(s) 187
MluCI AATT 4 cut(s) 79, 139, 233, 423
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 9 cut(s) 139, 175, 178, 271, 368, 392, 532, 539, 584
MseI TTAA 2 cut(s) 63, 450
MslI CAYNNNNRTG 3 cut(s) 57, 141, 557
Mva1269I GAATGC 1 cut(s) 548
NdeII GATC 3 cut(s) 133, 187, 577
NlaIII CATG 2 cut(s) 433, 562
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 2 cut(s) 213, 437
NspI RCATGY 1 cut(s) 562
PaeI GCATGC 1 cut(s) 562
PctI GAATGC 1 cut(s) 548
PfeI GAWTC 2 cut(s) 273, 316
PkrI GCNGC 1 cut(s) 40
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 3 cut(s) 57, 141, 557
SaqAI TTAA 2 cut(s) 63, 450
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 133, 187, 577
SchI GAGTC 1 cut(s) 221
SetI ASST 8 cut(s) 170, 262, 360, 374, 398, 502, 567, 576
SfaNI GCATC 1 cut(s) 196
SmiMI CAYNNNNRTG 3 cut(s) 57, 141, 557
SphI GCATGC 1 cut(s) 562
Sse9I AATT 4 cut(s) 79, 139, 233, 423
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 508
TaaI ACNGT 2 cut(s) 437, 443
TaqI TCGA 2 cut(s) 276, 576
TaqII GACCGA 2 cut(s) 85, 105
TasI AATT 4 cut(s) 79, 139, 233, 423
TfiI GAWTC 2 cut(s) 273, 316
Tru1I TTAA 2 cut(s) 63, 450
Tru9I TTAA 2 cut(s) 63, 450
TscAI CASTG 2 cut(s) 40, 367
TseFI GTSAC 2 cut(s) 213, 437
TseI GCWGC 1 cut(s) 38
Tsp45I GTSAC 2 cut(s) 213, 437
TspDTI ATGAA 3 cut(s) 418, 492, 510
TspRI CASTG 2 cut(s) 40, 367
XapI RAATTY 1 cut(s) 423
XceI RCATGY 1 cut(s) 562
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.