Rmu_sc0005946.1_g000019

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005946.1
OG0018063
Physical Location & Seq
Forward (+)
115842 .. 116347
506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005946.1_g000019.1.cds

Sequence Viewer

Length: 420 bp
atgtctatccagtgcttagcgagcagcggtagccctactgctcaaacttcacatctggatgttaaaagactgacagcaaattacaagccaagtatttggagtcatgatttttttcagtcgttacagattgatgatcgtaatcatgaagaagtatacaaagataataggtggaagttgatcgaggaggatctgaaaaatgtgattgatgcagagtcactacagactacacttgaattgattgatgacatccaactattaggtttgggacaccgattcgaggccagtataacagaagcccttgataaagttttgaagaatcttgaccaaataacagacgaggatactccaagtctgcacctcactgctctcagcttcagactccttagacaacatgggtttcaagtctcccaaggtaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

139

Amino Acids

15.88

Weight (kDa)

5.1

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 153
AciI CCGC 1 cut(s) 27
AclWI GGATC 1 cut(s) 195
AcuI CTGAAG 1 cut(s) 358
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 233, 313, 401
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 1 cut(s) 195
AoxI GGCC 1 cut(s) 279
ApeKI GCWGC 1 cut(s) 24
BbvI GCAGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 334
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 218
BfuI GTATCC 1 cut(s) 334
BisI GCNGC 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 1 cut(s) 26
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 16
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 409
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse1I ACTGG 2 cut(s) 10, 282
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 409
BseGI GGATG 2 cut(s) 64, 246
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 382
BseNI ACTGG 2 cut(s) 10, 282
BseRI GAGGAG 1 cut(s) 197
BseXI GCAGC 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 281
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 281
Bsp143I GATC 3 cut(s) 133, 177, 187
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 1 cut(s) 27
BspANI GGCC 1 cut(s) 281
BspCNI CTCAG 1 cut(s) 381
BspHI TCATGA 2 cut(s) 103, 142
BspPI GGATC 1 cut(s) 195
BsrI ACTGG 2 cut(s) 10, 282
BssECI CCNNGG 1 cut(s) 409
BssMI GATC 3 cut(s) 133, 177, 187
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 409
Bst1107I GTATAC 1 cut(s) 154
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 16, 368, 383
BstF5I GGATG 2 cut(s) 64, 246
BstKTI GATC 3 cut(s) 136, 180, 190
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 3 cut(s) 133, 177, 187
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstSFI CTRYAG 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 187
BstZ17I GTATAC 1 cut(s) 154
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 64, 246
BtsI GCAGTG 1 cut(s) 360
BtsIMutI CAGTG 2 cut(s) 17, 360
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 2 cut(s) 103, 142
CviAII CATG 3 cut(s) 104, 143, 392
CviJI RGCY 5 cut(s) 33, 88, 281, 296, 372
CviKI_1 RGCY 5 cut(s) 33, 88, 281, 296, 372
DdeI CTNAG 3 cut(s) 16, 368, 383
DpnI GATC 3 cut(s) 135, 179, 189
DpnII GATC 3 cut(s) 133, 177, 187
Eco130I CCWWGG 1 cut(s) 409
Eco57I CTGAAG 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 409
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 3 cut(s) 107, 146, 395
FaiI YATR 5 cut(s) 105, 144, 154, 287, 393
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 103, 142, 391
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 25
FokI GGATG 2 cut(s) 71, 233
Fsp4HI GCNGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 25
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 3 cut(s) 107, 146, 395
HinfI GANTC 5 cut(s) 100, 212, 273, 316, 378
Hpy166II GTNNAC 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 192, 377
Hpy188III TCNNGA 4 cut(s) 56, 104, 143, 320
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 209, 355
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 3 cut(s) 16, 368, 383
Hsp92II CATG 3 cut(s) 107, 146, 395
Kzo9I GATC 3 cut(s) 133, 177, 187
LpnPI CCDG 3 cut(s) 23, 41, 295
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 196
MaeIII GTNAC 2 cut(s) 120, 213
MalI GATC 3 cut(s) 135, 179, 189
MboI GATC 3 cut(s) 133, 177, 187
MboII GAAGA 2 cut(s) 158, 325
MflI RGATCY 1 cut(s) 187
MluCI AATT 2 cut(s) 79, 233
MlyI GAGTC 3 cut(s) 109, 221, 372
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 5 cut(s) 175, 178, 271, 331, 368
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 3 cut(s) 133, 177, 187
NlaIII CATG 3 cut(s) 107, 146, 395
NmuCI GTSAC 1 cut(s) 213
PagI TCATGA 2 cut(s) 103, 142
PfeI GAWTC 2 cut(s) 273, 316
PkrI GCNGC 1 cut(s) 26
PleI GAGTC 3 cut(s) 108, 220, 372
PpsI GAGTC 3 cut(s) 108, 220, 372
PsuI RGATCY 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 63
SatI GCNGC 1 cut(s) 25
Sau3AI GATC 3 cut(s) 133, 177, 187
SchI GAGTC 3 cut(s) 109, 221, 372
SetI ASST 5 cut(s) 170, 262, 360, 374, 415
SfaNI GCATC 1 cut(s) 196
SfcI CTRYAG 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 2 cut(s) 79, 233
SsiI CCGC 1 cut(s) 27
StyI CCWWGG 1 cut(s) 409
TaqI TCGA 2 cut(s) 180, 276
TasI AATT 2 cut(s) 79, 233
TfiI GAWTC 2 cut(s) 273, 316
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 2 cut(s) 17, 367
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 2 cut(s) 17, 367
XmiI GTMKAC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.