Rh2CG533500

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018063
Physical Location & Seq
Reverse (-)
70943625 .. 70999333
55709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG533500.1

Sequence Viewer

Length: 450 bp
ATGTCTACCCAATGCTTAGCAAGCAGCGGTAGCACTGCCGCTCAAACTTCAAATCTGGATGTTAAAAGACTGACAGCAAATTACAAGCCAAGTATTTGGAGTTGCGATTTTCTTCAGTCGTTACAGATTGATGATCGTAATCATGAAGAAGTCTACGGAGATAATAGGTGGAAGTTGATGGAGGAGGATCTGAAAAATATGATTGATGCAGAGTCACTAGAGACTACACTTGAATTTATTGATGACATCCATCGATTAGGTTTGGGACACCGATTTGAGACCAGTATAAAAGAAACCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACAGACGAAGATACTCCAAATCTTCACCTCACTGCTCTAAGCTTTAGGCTCCTCAGACATCATGGGTTTCAAGTCTCCCAAGCTTTAAGGATTACCATTGCAAAGATGTCAAAGGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

149

Amino Acids

17.06

Weight (kDa)

5.45

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 137 3.8e-21 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 41
AccI GTMKAC 2 cut(s) 5, 153
AciI CCGC 2 cut(s) 27, 39
AclWI GGATC 1 cut(s) 195
AcsI RAATTY 1 cut(s) 233
AcuI CTGAAG 1 cut(s) 98
AgsI TTSAA 4 cut(s) 51, 233, 313, 401
AluBI AGCT 2 cut(s) 372, 413
AluI AGCT 2 cut(s) 372, 413
Alw26I GTCTC 3 cut(s) 215, 272, 409
AlwI GGATC 1 cut(s) 195
ApeKI GCWGC 1 cut(s) 24
ApoI RAATTY 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 347
BbvI GCAGC 1 cut(s) 36
BccI CCATC 2 cut(s) 172, 258
BcoDI GTCTC 3 cut(s) 215, 272, 409
BfaI CTAG 1 cut(s) 218
BisI GCNGC 2 cut(s) 25, 39
BlpI GCTNAGC 1 cut(s) 16
BlsI GCNGC 2 cut(s) 26, 40
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 1 cut(s) 196
Bpu1102I GCTNAGC 1 cut(s) 16
Bsa29I ATCGAT 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 272
Bse1I ACTGG 1 cut(s) 282
Bse3DI GCAATG 1 cut(s) 426
Bse8I GATNNNNATC 1 cut(s) 138
BseCI ATCGAT 1 cut(s) 253
BseGI GGATG 2 cut(s) 64, 246
BseJI GATNNNNATC 1 cut(s) 138
BseMI GCAATG 1 cut(s) 426
BseMII CTCAG 1 cut(s) 397
BseNI ACTGG 1 cut(s) 282
BseRI GAGGAG 2 cut(s) 197, 371
BseXI GCAGC 1 cut(s) 36
BshVI ATCGAT 1 cut(s) 253
BslFI GGGAC 1 cut(s) 279
BsmAI GTCTC 3 cut(s) 215, 272, 409
BsmFI GGGAC 1 cut(s) 279
Bso31I GGTCTC 1 cut(s) 272
Bsp143I GATC 2 cut(s) 133, 187
Bsp1720I GCTNAGC 1 cut(s) 16
BspACI CCGC 2 cut(s) 27, 39
BspCNI CTCAG 1 cut(s) 396
BspDI ATCGAT 1 cut(s) 253
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 380
BspPI GGATC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 272
BsrBI CCGCTC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 426
BsrI ACTGG 1 cut(s) 282
BssMI GATC 2 cut(s) 133, 187
BstC8I GCNNGC 1 cut(s) 22
BstDEI CTNAG 3 cut(s) 16, 368, 383
BstF5I GGATG 2 cut(s) 64, 246
BstKTI GATC 2 cut(s) 136, 190
BstMAI GTCTC 3 cut(s) 215, 272, 409
BstMBI GATC 2 cut(s) 133, 187
BstMWI GCNNNNNNNGC 2 cut(s) 21, 30
BstV1I GCAGC 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 187
BstXI CCANNNNNNTGG 1 cut(s) 96
BstYI RGATCY 1 cut(s) 187
Bsu15I ATCGAT 1 cut(s) 253
BsuTUI ATCGAT 1 cut(s) 253
BtsCI GGATG 2 cut(s) 64, 246
BtsI GCAGTG 2 cut(s) 33, 360
BtsIMutI CAGTG 2 cut(s) 33, 360
Cac8I GCNNGC 1 cut(s) 22
CciI TCATGA 1 cut(s) 142
ClaI ATCGAT 1 cut(s) 253
CviAII CATG 3 cut(s) 143, 392, 447
CviJI RGCY 4 cut(s) 88, 372, 379, 413
CviKI_1 RGCY 4 cut(s) 88, 372, 379, 413
DdeI CTNAG 3 cut(s) 16, 368, 383
DpnI GATC 2 cut(s) 135, 189
DpnII GATC 2 cut(s) 133, 187
Eco31I GGTCTC 1 cut(s) 272
Eco57I CTGAAG 1 cut(s) 98
FaeI CATG 3 cut(s) 146, 395, 450
FaiI YATR 5 cut(s) 144, 200, 287, 393, 448
FalI AAGNNNNNCTT 2 cut(s) 282, 314
FaqI GGGAC 1 cut(s) 279
FatI CATG 3 cut(s) 142, 391, 446
FblI GTMKAC 2 cut(s) 5, 153
Fnu4HI GCNGC 2 cut(s) 25, 39
FokI GGATG 2 cut(s) 71, 233
Fsp4HI GCNGC 2 cut(s) 25, 39
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 25, 39
Hin1II CATG 3 cut(s) 146, 395, 450
HindIII AAGCTT 2 cut(s) 370, 411
HinfI GANTC 2 cut(s) 212, 316
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188I TCNGA 2 cut(s) 192, 386
Hpy188III TCNNGA 3 cut(s) 56, 143, 320
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyCH4V TGCA 2 cut(s) 209, 431
HpyF10VI GCNNNNNNNGC 2 cut(s) 21, 30
HpyF3I CTNAG 3 cut(s) 16, 368, 383
Hsp92II CATG 3 cut(s) 146, 395, 450
Kzo9I GATC 2 cut(s) 133, 187
LmnI GCTCC 1 cut(s) 384
LpnPI CCDG 2 cut(s) 41, 295
Lsp1109I GCAGC 1 cut(s) 36
LweI GCATC 1 cut(s) 196
MaeI CTAG 1 cut(s) 218
MaeIII GTNAC 2 cut(s) 120, 213
MalI GATC 2 cut(s) 135, 189
MbiI CCGCTC 1 cut(s) 41
MboI GATC 2 cut(s) 133, 187
MboII GAAGA 5 cut(s) 104, 158, 325, 344, 350
MflI RGATCY 1 cut(s) 187
MluCI AATT 2 cut(s) 79, 233
MlyI GAGTC 1 cut(s) 221
MnlI CCTC 4 cut(s) 175, 178, 368, 392
MseI TTAA 2 cut(s) 63, 416
MspA1I CMGCKG 1 cut(s) 27
MwoI GCNNNNNNNGC 2 cut(s) 21, 30
NdeII GATC 2 cut(s) 133, 187
NlaIII CATG 3 cut(s) 146, 395, 450
NlaIV GGNNCC 1 cut(s) 380
NmuCI GTSAC 1 cut(s) 213
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 1 cut(s) 316
PkrI GCNGC 2 cut(s) 26, 40
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspN4I GGNNCC 1 cut(s) 380
PsuI RGATCY 1 cut(s) 187
SaqAI TTAA 2 cut(s) 63, 416
SatI GCNGC 2 cut(s) 25, 39
Sau3AI GATC 2 cut(s) 133, 187
SchI GAGTC 1 cut(s) 221
SetI ASST 5 cut(s) 170, 262, 360, 374, 415
SfaNI GCATC 1 cut(s) 196
Sse9I AATT 2 cut(s) 79, 233
SsiI CCGC 2 cut(s) 27, 39
SspMI CTAG 1 cut(s) 218
TaqI TCGA 1 cut(s) 253
TasI AATT 2 cut(s) 79, 233
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 316
Tru1I TTAA 2 cut(s) 63, 416
Tru9I TTAA 2 cut(s) 63, 416
TscAI CASTG 2 cut(s) 40, 367
TseFI GTSAC 1 cut(s) 213
TseI GCWGC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 213
TspDTI ATGAA 1 cut(s) 159
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 40, 367
XapI RAATTY 1 cut(s) 233
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.