Rroxscaffold_2G00089700

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018063
Physical Location & Seq
Forward (+)
11652953 .. 11653460
508 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089700.1

Sequence Viewer

Length: 417 bp
ATGTCTACCCAATGCTTAGCGAGTAGTGGTAGCACTGCTACTCAAACCTCACATTTGGATGTTAAAAGACCGACAACAAATTACAAGCCAAGTATTTGGAGTTATGATTTTCTTCGGTCATTACAGATTGATGATCGTAATCATGAAGAAGTATACGAAGATAATAGGTGGAAGTTGATGGAGGAGCATCTCATAAATATGATTGATGCAGAGTCACTAGAGACTACTCTTGAATTGATTGATGACATCCAACGATTAGGTTTGGGACACCGATTCGAGGCCAATATAACAGAAGCCCTTGATAGAGTTTTGAAGAATCTTGACCAAATAACGTACGTGGGTACTCCAAGACTCCACCTCATTGCTCTCGGCTTCGGGCTCCTTAGACAAGTATGGGTTTCAAGTCACCCAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko01110 map00900 map01110
Pfam Domains
Protein Families
Terpene_synth Terpene_synth_C

Protein Analysis

138

Amino Acids

15.95

Weight (kDa)

5.43

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Terpene_synth PF01397 32 - 130 8.2e-14 Terpene synthase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 5, 153
AfaI GTAC 2 cut(s) 335, 343
AfiI CCNNNNNNNGG 1 cut(s) 277
AgsI TTSAA 3 cut(s) 233, 313, 402
Alw26I GTCTC 1 cut(s) 215
AoxI GGCC 1 cut(s) 279
AsuHPI GGTGA 1 cut(s) 398
BanII GRGCYC 1 cut(s) 381
BccI CCATC 1 cut(s) 172
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 218
BlpI GCTNAGC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 380
BmsI GCATC 2 cut(s) 196, 196
Bpu1102I GCTNAGC 1 cut(s) 16
BsaAI YACGTR 1 cut(s) 337
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 1 cut(s) 410
Bsc4I CCNNNNNNNGG 1 cut(s) 277
Bse3DI GCAATG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 410
BseGI GGATG 2 cut(s) 64, 246
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 1 cut(s) 277
BseMI GCAATG 1 cut(s) 360
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 281
BsiWI CGTACG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 277
BsmAI GTCTC 1 cut(s) 215
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 1 cut(s) 281
Bsp1286I GDGCHC 1 cut(s) 381
Bsp143I GATC 1 cut(s) 133
Bsp1720I GCTNAGC 1 cut(s) 16
BspANI GGCC 1 cut(s) 281
BspHI TCATGA 1 cut(s) 142
BspLI GGNNCC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 360
BssECI CCNNGG 1 cut(s) 410
BssMI GATC 1 cut(s) 133
BssNAI GTATAC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 410
Bst1107I GTATAC 1 cut(s) 154
BstBAI YACGTR 1 cut(s) 337
BstDEI CTNAG 2 cut(s) 16, 383
BstF5I GGATG 2 cut(s) 64, 246
BstKTI GATC 1 cut(s) 136
BstMAI GTCTC 1 cut(s) 215
BstMBI GATC 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 96
BstZ17I GTATAC 1 cut(s) 154
BsuRI GGCC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 64, 246
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 1 cut(s) 33
CciI TCATGA 1 cut(s) 142
Csp6I GTAC 2 cut(s) 334, 342
CviAII CATG 1 cut(s) 143
CviJI RGCY 5 cut(s) 88, 281, 296, 372, 379
CviKI_1 RGCY 5 cut(s) 88, 281, 296, 372, 379
CviQI GTAC 2 cut(s) 334, 342
DdeI CTNAG 2 cut(s) 16, 383
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eco130I CCWWGG 1 cut(s) 410
Eco24I GRGCYC 1 cut(s) 381
EcoT14I CCWWGG 1 cut(s) 410
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 1 cut(s) 410
FaeI CATG 1 cut(s) 146
FaiI YATR 7 cut(s) 105, 144, 154, 194, 200, 287, 394
FaqI GGGAC 1 cut(s) 279
FatI CATG 1 cut(s) 142
FblI GTMKAC 2 cut(s) 5, 153
FokI GGATG 2 cut(s) 71, 233
FriOI GRGCYC 1 cut(s) 381
FspBI CTAG 1 cut(s) 218
HaeIII GGCC 1 cut(s) 281
Hin1II CATG 1 cut(s) 146
HinfI GANTC 4 cut(s) 212, 273, 316, 351
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 6, 154
Hpy188III TCNNGA 3 cut(s) 143, 230, 320
Hpy8I GTNNAC 2 cut(s) 6, 154
HpyCH4IV ACGT 2 cut(s) 332, 336
HpyCH4V TGCA 1 cut(s) 209
HpyF3I CTNAG 2 cut(s) 16, 383
HpySE526I ACGT 2 cut(s) 332, 336
Hsp92II CATG 1 cut(s) 146
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 2 cut(s) 184, 384
LweI GCATC 2 cut(s) 196, 196
MaeI CTAG 1 cut(s) 218
MaeII ACGT 2 cut(s) 332, 336
MaeIII GTNAC 2 cut(s) 213, 404
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 4 cut(s) 104, 158, 170, 325
MhlI GDGCHC 1 cut(s) 381
MluCI AATT 2 cut(s) 79, 233
MlyI GAGTC 2 cut(s) 221, 345
MmeI TCCRAC 1 cut(s) 274
MnlI CCTC 4 cut(s) 58, 175, 271, 368
MseI TTAA 1 cut(s) 63
MslI CAYNNNNRTG 2 cut(s) 57, 197
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 146
NlaIV GGNNCC 1 cut(s) 380
NmeAIII GCCGAG 1 cut(s) 348
NmuCI GTSAC 2 cut(s) 213, 404
PagI TCATGA 1 cut(s) 142
PfeI GAWTC 2 cut(s) 273, 316
Pfl23II CGTACG 1 cut(s) 333
PleI GAGTC 2 cut(s) 220, 345
PpsI GAGTC 2 cut(s) 220, 345
Ppu21I YACGTR 1 cut(s) 337
PspLI CGTACG 1 cut(s) 333
PspN4I GGNNCC 1 cut(s) 380
RsaI GTAC 2 cut(s) 335, 343
RsaNI GTAC 2 cut(s) 334, 342
RseI CAYNNNNRTG 2 cut(s) 57, 197
SaqAI TTAA 1 cut(s) 63
Sau3AI GATC 1 cut(s) 133
SchI GAGTC 2 cut(s) 221, 345
SduI GDGCHC 1 cut(s) 381
SetI ASST 7 cut(s) 50, 170, 262, 335, 339, 360, 416
SfaNI GCATC 2 cut(s) 196, 196
SmiMI CAYNNNNRTG 2 cut(s) 57, 197
Sse9I AATT 2 cut(s) 79, 233
SspMI CTAG 1 cut(s) 218
StyI CCWWGG 1 cut(s) 410
TaiI ACGT 2 cut(s) 335, 339
TaqI TCGA 1 cut(s) 276
TaqII GACCGA 2 cut(s) 85, 105
TasI AATT 2 cut(s) 79, 233
TfiI GAWTC 2 cut(s) 273, 316
Tru1I TTAA 1 cut(s) 63
Tru9I TTAA 1 cut(s) 63
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 2 cut(s) 213, 404
Tsp45I GTSAC 2 cut(s) 213, 404
TspDTI ATGAA 1 cut(s) 159
TspRI CASTG 1 cut(s) 40
XmiI GTMKAC 2 cut(s) 5, 153
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.