Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

34346988 .. 34349380

Gene Structure 2393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44591.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGGAGCGAAAGCTAACACATTTAACACCCCTGGTGTTGAAGAGCACGCTCATTTCTTGAAGGGAGTAGAAGATGCTCTGAAGATTCGTCAGTCTGTGATTGACTGCTTTGAAAGGGCGAGTCTTCCCTGCATAACTGAAGAAGAAAGGAAGAAAATTTTGCACTTCGTAGTTGTTGGTGGCGGTTCAGCAGGTGTGGAGTTTGCTGCAGAGCTTCATGACTTCGTAACTGCGGATTTAGCCAAGTTGTACCCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

87

Amino Acids

9.36

Weight (kDa)

5.46

Isoelectric Point (pI)

27.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	1 - 75	8.3e-09	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	182
Acc36I	ACCTGC	1 cut(s)	182
AciI	CCGC	2 cut(s)	183, 233
AcsI	RAATTY	1 cut(s)	156
AcuI	CTGAAG	2 cut(s)	101, 159
AfaI	GTAC	1 cut(s)	251
AgsI	TTSAA	3 cut(s)	41, 61, 113
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	2 cut(s)	14, 214
AluI	AGCT	2 cut(s)	14, 214
Alw21I	GWGCWC	1 cut(s)	48
ApeKI	GCWGC	1 cut(s)	206
ApoI	RAATTY	1 cut(s)	156
BbsI	GAAGAC	1 cut(s)	116
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	1 cut(s)	193
BciT130I	CCWGG	1 cut(s)	33
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	182
BisI	GCNGC	1 cut(s)	207
BlsI	GCNGC	1 cut(s)	208
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	64
BpiI	GAAGAC	1 cut(s)	116
BsaJI	CCNNGG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	31
BseXI	GCAGC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	48
Bsp1286I	GDGCHC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	183, 233
BspHI	TCATGA	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	182
BspQI	GCTCTTC	1 cut(s)	36
BssECI	CCNNGG	1 cut(s)	31
Bst2UI	CCWGG	1 cut(s)	33
Bst6I	CTCTTC	1 cut(s)	36
BstC8I	GCNNGC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	193
BstV2I	GAAGAC	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	48
CciI	TCATGA	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	250
CviAII	CATG	1 cut(s)	218
CviJI	RGCY	3 cut(s)	14, 214, 242
CviKI_1	RGCY	3 cut(s)	14, 214, 242
CviQI	GTAC	1 cut(s)	250
Eam1104I	CTCTTC	1 cut(s)	36
EarI	CTCTTC	1 cut(s)	36
Eco57I	CTGAAG	2 cut(s)	101, 159
EcoRII	CCWGG	1 cut(s)	31
FaeI	CATG	1 cut(s)	221
FaiI	YATR	2 cut(s)	134, 219
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	207
GluI	GCNGC	1 cut(s)	207
Hin1II	CATG	1 cut(s)	221
HinfI	GANTC	2 cut(s)	85, 121
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	2 cut(s)	58, 218
HpyAV	CCTTC	1 cut(s)	55
HpyCH4V	TGCA	3 cut(s)	132, 163, 209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	221
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	5
LpnPI	CCDG	4 cut(s)	18, 45, 142, 177
Lsp1109I	GCAGC	1 cut(s)	193
LweI	GCATC	1 cut(s)	64
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	7 cut(s)	53, 83, 94, 116, 152, 155, 163
MhlI	GDGCHC	1 cut(s)	48
MluCI	AATT	1 cut(s)	156
MlyI	GAGTC	1 cut(s)	130
MseI	TTAA	1 cut(s)	24
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	239
NlaIII	CATG	1 cut(s)	221
PagI	TCATGA	1 cut(s)	217
PaqCI	CACCTGC	1 cut(s)	182
PciSI	GCTCTTC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	85
PkrI	GCNGC	1 cut(s)	208
PleI	GAGTC	1 cut(s)	129
PpsI	GAGTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	211
RsaI	GTAC	1 cut(s)	251
RsaNI	GTAC	1 cut(s)	250
SapI	GCTCTTC	1 cut(s)	36
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	207
SchI	GAGTC	1 cut(s)	130
ScrFI	CCNGG	1 cut(s)	33
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	16, 196, 216
SfaNI	GCATC	1 cut(s)	64
SfcI	CTRYAG	1 cut(s)	207
SgeI	CNNG	9 cut(s)	44, 45, 59, 70, 132, 141, 204, 230, 256
Sse9I	AATT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	183, 233
StyD4I	CCNGG	1 cut(s)	31
TasI	AATT	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	85
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	1 cut(s)	206
TspDTI	ATGAA	1 cut(s)	206
XapI	RAATTY	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.