Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

78877949 .. 78882313

Gene Structure 4365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG572100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGTGGGGAGCTTCATTCTATGAGAGAGCCTCTAGGCTTTTTCAGCAATACCCCTCCCTATCTAAGCTTCTTGTTGTTGCTACAGTCAGTGGGGGAAGTCTGGCGGCATTTCATGAAGGCAGACCATTCCATAGTCGTACTGCGTATGCTGAAGCAGCTCAGTCTGAAGGCAAATCGAAGAAAAAAAAGGTGAAAGGCTTAGATGTTCAGTTCAGGGAAGCAGCATGTTACAAAATAGATCCACAGAATAAGAAAGTTTACTGCCGGACAACCCAAGACAACAATTCGTGCGGGAAAAATGAATTTAGTGTAGATTATGACTACCTGATCATAGCCATGGGAGCAAAATCTAACACATTTAACACTCCTGGTGTTGAAGAGCACGCTCATTTCTTGAAGGCTAACAGACGTGTTTTGGCTACTGATGAATGGCTGAGGGTGGAAGGATGTGATGGCGTATATGCTGTAGGTGATTGTGCAACAGTAAACCAACGCAGGATCATGGAAGATATTTCACATATAATTAGTAAGGCAGACACAGGCAAGTCCGGTACATTAAGTCTTGAGGAGTTTCATGGAGTTATAGACGACGTTATGGAGAGGTATCCTCAATTGGAGCTTCATTTGAAGAGTAAACAGATGTCAAGTATTCATGATTTACTGAAAAATAGTTCAGAGAAGTATTCCAGTACTGAAGTAGATATTGAGACCTTTAAATCAGCTCTTTCTCAAGCAGATTCTCAGATGAAAAACCTTCCTGCAACAGCCCAGGTAGCTGCTCAACAAGGTGCCTACCTTGCCAACTGTTTCAACCGTATGGAGGAGTGTGAGAAATATCCTGAAGGTCCCCTAAGGTTTAGGGGTGAGGGACGCCACCGTTTTCATCCCTTCAGGTGCCCCTCTAAAGTATCTTTTCCAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

307

Amino Acids

34.48

Weight (kDa)

8.32

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	40 - 132	3.2e-10	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	788, 894
AciI	CCGC	2 cut(s)	104, 291
AclWI	GGATC	2 cut(s)	233, 506
AcsI	RAATTY	1 cut(s)	302
AcuI	CTGAAG	5 cut(s)	171, 186, 714, 861, 874
AcyI	GRCGYC	1 cut(s)	871
AfaI	GTAC	3 cut(s)	139, 553, 691
AfiI	CCNNNNNNNGG	1 cut(s)	820
AflIII	ACRYGT	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	377, 397, 628, 811
AjiI	CACGTC	1 cut(s)	410
AjnI	CCWGG	2 cut(s)	367, 768
AluBI	AGCT	6 cut(s)	11, 67, 158, 619, 722, 776
AluI	AGCT	6 cut(s)	11, 67, 158, 619, 722, 776
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	1 cut(s)	701
AlwI	GGATC	2 cut(s)	233, 506
ApeKI	GCWGC	3 cut(s)	155, 221, 776
ApoI	RAATTY	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	845
AsuHPI	GGTGA	3 cut(s)	202, 482, 875
AvaII	GGWCC	1 cut(s)	845
AxyI	CCTNAGG	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	899
BanI	GGYRCC	2 cut(s)	788, 894
Bbv12I	GWGCWC	1 cut(s)	384
BbvCI	CCTCAGC	1 cut(s)	434
BbvI	GCAGC	3 cut(s)	167, 233, 763
BccI	CCATC	1 cut(s)	446
BciT130I	CCWGG	2 cut(s)	369, 770
BciVI	GTATCC	1 cut(s)	615
BclI	TGATCA	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	33
BfmI	CTRYAG	2 cut(s)	81, 465
BfuI	GTATCC	1 cut(s)	615
BisI	GCNGC	4 cut(s)	105, 156, 222, 777
BlsI	GCNGC	4 cut(s)	106, 157, 223, 778
BmcAI	AGTACT	1 cut(s)	691
Bme1390I	CCNGG	2 cut(s)	369, 770
Bme18I	GGWCC	1 cut(s)	845
BmgBI	CACGTC	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	845
BmiI	GGNNCC	3 cut(s)	790, 847, 896
BmrFI	CCNGG	2 cut(s)	369, 770
BplI	GAGNNNNNCTC	4 cut(s)	14, 46, 592, 624
Bpu10I	CCTNAGC	1 cut(s)	434
BpuEI	CTTGAG	2 cut(s)	584, 714
BsaHI	GRCGYC	1 cut(s)	871
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	2 cut(s)	336, 768
BsaWI	WCCGGW	1 cut(s)	548
Bsc4I	CCNNNNNNNGG	1 cut(s)	820
Bse1I	ACTGG	1 cut(s)	687
Bse21I	CCTNAGG	1 cut(s)	851
BseBI	CCWGG	2 cut(s)	369, 770
BseDI	CCNNGG	2 cut(s)	336, 768
BseGI	GGATG	2 cut(s)	452, 883
BseLI	CCNNNNNNNGG	1 cut(s)	820
BseMII	CTCAG	3 cut(s)	173, 425, 755
BseNI	ACTGG	1 cut(s)	687
BseRI	GAGGAG	2 cut(s)	581, 836
BseSI	GKGCMC	1 cut(s)	899
BseXI	GCAGC	3 cut(s)	167, 233, 763
BshNI	GGYRCC	2 cut(s)	788, 894
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	265, 549
BslFI	GGGAC	2 cut(s)	831, 882
BslI	CCNNNNNNNGG	1 cut(s)	820
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	2 cut(s)	831, 882
Bso31I	GGTCTC	1 cut(s)	701
Bsp1286I	GDGCHC	2 cut(s)	384, 899
Bsp143I	GATC	3 cut(s)	238, 327, 498
Bsp19I	CCATGG	1 cut(s)	336
BspACI	CCGC	2 cut(s)	104, 291
BspCNI	CTCAG	3 cut(s)	172, 426, 754
BspHI	TCATGA	2 cut(s)	112, 652
BspLI	GGNNCC	3 cut(s)	790, 847, 896
BspPI	GGATC	2 cut(s)	233, 506
BspQI	GCTCTTC	1 cut(s)	372
BspT107I	GGYRCC	2 cut(s)	788, 894
BspTNI	GGTCTC	1 cut(s)	701
BsrI	ACTGG	1 cut(s)	687
BssECI	CCNNGG	2 cut(s)	336, 768
BssMI	GATC	3 cut(s)	238, 327, 498
BssNI	GRCGYC	1 cut(s)	871
BssT1I	CCWWGG	1 cut(s)	336
Bst2UI	CCWGG	2 cut(s)	369, 770
Bst4CI	ACNGT	5 cut(s)	85, 484, 806, 815, 878
Bst6I	CTCTTC	2 cut(s)	372, 623
BstACI	GRCGYC	1 cut(s)	871
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	6 cut(s)	63, 159, 199, 434, 741, 851
BstDSI	CCRYGG	1 cut(s)	336
BstF5I	GGATG	2 cut(s)	452, 883
BstKTI	GATC	3 cut(s)	241, 330, 501
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	3 cut(s)	238, 327, 498
BstMWI	GCNNNNNNNGC	5 cut(s)	43, 155, 341, 773, 797
BstNI	CCWGG	2 cut(s)	369, 770
BstNSI	RCATGY	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	367, 768
BstSFI	CTRYAG	2 cut(s)	81, 465
BstSLI	GKGCMC	1 cut(s)	899
BstV1I	GCAGC	3 cut(s)	167, 233, 763
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	851
BsuI	GTATCC	1 cut(s)	615
BtgI	CCRYGG	1 cut(s)	336
BtrI	CACGTC	1 cut(s)	410
BtsCI	GGATG	2 cut(s)	452, 883
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	384
CciI	TCATGA	2 cut(s)	112, 652
Cfr13I	GGNCC	1 cut(s)	845
CseI	GACGC	1 cut(s)	879
Csp6I	GTAC	3 cut(s)	138, 552, 690
CviAII	CATG	6 cut(s)	113, 225, 337, 502, 575, 653
CviQI	GTAC	3 cut(s)	138, 552, 690
DdeI	CTNAG	6 cut(s)	63, 159, 199, 434, 741, 851
DpnI	GATC	3 cut(s)	240, 329, 500
DpnII	GATC	3 cut(s)	238, 327, 498
DraI	TTTAAA	1 cut(s)	715
Eam1104I	CTCTTC	2 cut(s)	372, 623
EarI	CTCTTC	2 cut(s)	372, 623
Eco130I	CCWWGG	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	701
Eco47I	GGWCC	1 cut(s)	845
Eco57I	CTGAAG	5 cut(s)	171, 186, 714, 861, 874
Eco81I	CCTNAGG	1 cut(s)	851
EcoO109I	RGGNCCY	1 cut(s)	845
EcoRII	CCWGG	2 cut(s)	367, 768
EcoT14I	CCWWGG	1 cut(s)	336
ErhI	CCWWGG	1 cut(s)	336
FaeI	CATG	6 cut(s)	116, 228, 340, 505, 578, 656
FaqI	GGGAC	2 cut(s)	831, 882
FatI	CATG	6 cut(s)	112, 224, 336, 501, 574, 652
FauI	CCCGC	1 cut(s)	284
FbaI	TGATCA	1 cut(s)	327
Fnu4HI	GCNGC	4 cut(s)	105, 156, 222, 777
FokI	GGATG	2 cut(s)	459, 870
Fsp4HI	GCNGC	4 cut(s)	105, 156, 222, 777
FspBI	CTAG	1 cut(s)	33
GluI	GCNGC	4 cut(s)	105, 156, 222, 777
HapII	CCGG	2 cut(s)	265, 549
HgaI	GACGC	1 cut(s)	879
Hin1I	GRCGYC	1 cut(s)	871
Hin1II	CATG	6 cut(s)	116, 228, 340, 505, 578, 656
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	1 cut(s)	737
HpaII	CCGG	2 cut(s)	265, 549
HphI	GGTGA	3 cut(s)	202, 482, 875
Hpy166II	GTNNAC	3 cut(s)	259, 487, 635
Hpy188I	TCNGA	3 cut(s)	166, 676, 744
Hpy188III	TCNNGA	5 cut(s)	113, 394, 563, 653, 839
Hpy8I	GTNNAC	3 cut(s)	259, 487, 635
Hpy99I	CGWCG	1 cut(s)	593
HpyAV	CCTTC	7 cut(s)	110, 161, 391, 437, 764, 836, 898
HpyCH4III	ACNGT	5 cut(s)	85, 484, 806, 815, 878
HpyCH4IV	ACGT	2 cut(s)	409, 591
HpyCH4V	TGCA	2 cut(s)	479, 761
HpyF10VI	GCNNNNNNNGC	5 cut(s)	43, 155, 341, 773, 797
HpyF3I	CTNAG	6 cut(s)	63, 159, 199, 434, 741, 851
HpySE526I	ACGT	2 cut(s)	409, 591
Hsp92I	GRCGYC	1 cut(s)	871
Hsp92II	CATG	6 cut(s)	116, 228, 340, 505, 578, 656
Ksp22I	TGATCA	1 cut(s)	327
Kzo9I	GATC	3 cut(s)	238, 327, 498
LguI	GCTCTTC	1 cut(s)	372
LmnI	GCTCC	3 cut(s)	8, 341, 616
Lsp1109I	GCAGC	3 cut(s)	167, 233, 763
MaeI	CTAG	1 cut(s)	33
MaeII	ACGT	2 cut(s)	409, 591
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	240, 329, 500
MboI	GATC	3 cut(s)	238, 327, 498
MboII	GAAGA	4 cut(s)	190, 389, 518, 640
MfeI	CAATTG	1 cut(s)	611
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	384, 899
MluCI	AATT	4 cut(s)	283, 302, 522, 611
MnlI	CCTC	9 cut(s)	40, 64, 429, 559, 594, 618, 814, 859, 910
MseI	TTAA	3 cut(s)	360, 557, 714
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	265, 549
MspR9I	CCNGG	2 cut(s)	369, 770
MunI	CAATTG	1 cut(s)	611
MvaI	CCWGG	2 cut(s)	369, 770
MwoI	GCNNNNNNNGC	5 cut(s)	43, 155, 341, 773, 797
NcoI	CCATGG	1 cut(s)	336
NdeII	GATC	3 cut(s)	238, 327, 498
NlaIII	CATG	6 cut(s)	116, 228, 340, 505, 578, 656
NlaIV	GGNNCC	3 cut(s)	790, 847, 896
NspI	RCATGY	1 cut(s)	228
PagI	TCATGA	2 cut(s)	112, 652
PciSI	GCTCTTC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	737
PkrI	GCNGC	4 cut(s)	106, 157, 223, 778
PpuMI	RGGWCCY	1 cut(s)	845
Psp5II	RGGWCCY	1 cut(s)	845
Psp6I	CCWGG	2 cut(s)	367, 768
PspGI	CCWGG	2 cut(s)	367, 768
PspN4I	GGNNCC	3 cut(s)	790, 847, 896
PspPI	GGNCC	1 cut(s)	845
PspPPI	RGGWCCY	1 cut(s)	845
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	3 cut(s)	139, 553, 691
RsaNI	GTAC	3 cut(s)	138, 552, 690
RseI	CAYNNNNRTG	1 cut(s)	335
SapI	GCTCTTC	1 cut(s)	372
SaqAI	TTAA	3 cut(s)	360, 557, 714
SatI	GCNGC	4 cut(s)	105, 156, 222, 777
Sau3AI	GATC	3 cut(s)	238, 327, 498
Sau96I	GGNCC	1 cut(s)	845
ScaI	AGTACT	1 cut(s)	691
ScrFI	CCNGG	2 cut(s)	369, 770
SduI	GDGCHC	2 cut(s)	384, 899
SfcI	CTRYAG	2 cut(s)	81, 465
SinI	GGWCC	1 cut(s)	845
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	563, 729
SmoI	CTYRAG	2 cut(s)	563, 729
Sse9I	AATT	4 cut(s)	283, 302, 522, 611
SsiI	CCGC	2 cut(s)	104, 291
SspMI	CTAG	1 cut(s)	33
StyD4I	CCNGG	2 cut(s)	367, 768
StyI	CCWWGG	1 cut(s)	336
TaaI	ACNGT	5 cut(s)	85, 484, 806, 815, 878
TaiI	ACGT	2 cut(s)	412, 594
TaqI	TCGA	1 cut(s)	176
TasI	AATT	4 cut(s)	283, 302, 522, 611
TatI	WGTACW	1 cut(s)	689
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	737
Tru1I	TTAA	3 cut(s)	360, 557, 714
Tru9I	TTAA	3 cut(s)	360, 557, 714
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	3 cut(s)	155, 221, 776
TspDTI	ATGAA	9 cut(s)	101, 129, 315, 441, 563, 611, 641, 761, 872
TspRI	CASTG	1 cut(s)	94
VpaK11BI	GGWCC	1 cut(s)	845
XapI	RAATTY	1 cut(s)	302
XceI	RCATGY	1 cut(s)	228
XspI	CTAG	1 cut(s)	33
ZrmI	AGTACT	1 cut(s)	691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.