Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

7016837 .. 7018181

Gene Structure 1345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1065500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGACGCGAACAGGTTCACTGGTCGTAAAATTAACTGATAAGGGAGTCTCCGCTAAAGATAGAGACACGGGAAAAGTTTCAAATATACCTTATGGGATGGTTCTCTGGGCAACTGGTATCGGGCCACGCCCTGAGATTATCGATTTTATGAAGCAGATTGGTCAGACCAATCGACGTGTTTTGGCTACGGATGAATGTCTGAGGGTGGAAGGATGTGACGGGGTGTATGCTTTAGGTGATTGTGCAACAGTAAATCAACACCGCGTCATGGATGATATTGTTTCGATATTCCGAAGGGCAAATAAGGACAACTCTGGTACATTAAGTCTAGAGGAATTTCAAGAAGTCATGGAGGACCTCATGGTGGCTGCTCAACAAGGTGCCTACCTTGCCGATTGTTTCAATCGTATGGAGGAATGTGAGAATTACCCTGAAGGTCCCTTCAAGTTCAGGGATGTTGGACGCCACCGCTTTCAACCCTTCAGGTACAAACACTTTGGGATGTTCGCCCCACTGGGAGGAGAACAAACTGCAGCTCATCTTCCAGGAGATTGGGTCTCAATTGGCCACAGCACTCAGTGGCTCTGGTACTCAGTATATGCTAGCAAGCTAGTGAGTTGGCGCATAAAGGTGCTGGTGGTTTCGGACTGGGGAAGGCGATCTACTTTCAGAAGGGACTCTAGTCGGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

231

Amino Acids

26.14

Weight (kDa)

8.26

Isoelectric Point (pI)

41.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	3 - 91	2.5e-10	Pyridine nucleotide-disulphide oxidoreductase
NDH2_C	PF22366	165 - 226	9.3e-13	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	380
AccII	CGCG	2 cut(s)	7, 264
AciI	CCGC	3 cut(s)	51, 262, 469
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	335
AcuI	CTGAAG	2 cut(s)	453, 466
AcyI	GRCGYC	1 cut(s)	463
AdeI	CACNNNGTG	1 cut(s)	579
AfaI	GTAC	3 cut(s)	319, 488, 590
AfiI	CCNNNNNNNGG	3 cut(s)	268, 364, 518
AflIII	ACRYGT	1 cut(s)	175
AgsI	TTSAA	5 cut(s)	81, 341, 403, 445, 476
AjiI	CACGTC	1 cut(s)	176
AjnI	CCWGG	1 cut(s)	544
AluBI	AGCT	2 cut(s)	536, 610
AluI	AGCT	2 cut(s)	536, 610
Alw26I	GTCTC	3 cut(s)	52, 57, 562
AoxI	GGCC	2 cut(s)	122, 565
ApeKI	GCWGC	2 cut(s)	368, 533
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	2 cut(s)	13, 76
AspLEI	GCGC	1 cut(s)	624
AspS9I	GGNCC	3 cut(s)	122, 355, 437
AsuHPI	GGTGA	1 cut(s)	248
AsuNHI	GCTAGC	1 cut(s)	602
AvaII	GGWCC	2 cut(s)	355, 437
BalI	TGGCCA	1 cut(s)	567
BanI	GGYRCC	1 cut(s)	380
BarI	GAAGNNNNNNTAC	2 cut(s)	646, 678
BbvI	GCAGC	2 cut(s)	355, 545
BccI	CCATC	1 cut(s)	91
BciT130I	CCWGG	1 cut(s)	546
BcoDI	GTCTC	3 cut(s)	52, 57, 562
BfaI	CTAG	4 cut(s)	329, 603, 611, 681
BfmI	CTRYAG	1 cut(s)	531
BisI	GCNGC	2 cut(s)	369, 534
BlsI	GCNGC	2 cut(s)	370, 535
Bme1390I	CCNGG	1 cut(s)	546
Bme18I	GGWCC	2 cut(s)	355, 437
BmgBI	CACGTC	1 cut(s)	176
BmgT120I	GGNCC	3 cut(s)	122, 355, 437
BmiI	GGNNCC	2 cut(s)	382, 439
BmrFI	CCNGG	1 cut(s)	546
BmrI	ACTGGG	2 cut(s)	524, 658
BmtI	GCTAGC	1 cut(s)	606
BmuI	ACTGGG	2 cut(s)	524, 658
BoxI	GACNNNNGTC	1 cut(s)	681
Bsa29I	ATCGAT	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	463
BsaI	GGTCTC	1 cut(s)	562
BsaXI	ACNNNNNCTCC	2 cut(s)	540, 570
Bsc4I	CCNNNNNNNGG	3 cut(s)	268, 364, 518
Bse1I	ACTGG	4 cut(s)	24, 118, 519, 653
BseBI	CCWGG	1 cut(s)	546
BseCI	ATCGAT	1 cut(s)	141
BseGI	GGATG	6 cut(s)	102, 196, 218, 277, 460, 507
BseLI	CCNNNNNNNGG	3 cut(s)	268, 364, 518
BseMII	CTCAG	4 cut(s)	123, 191, 590, 606
BseNI	ACTGG	4 cut(s)	24, 118, 519, 653
BseRI	GAGGAG	1 cut(s)	534
BseXI	GCAGC	2 cut(s)	355, 545
Bsh1236I	CGCG	2 cut(s)	7, 264
BshFI	GGCC	2 cut(s)	124, 567
BshNI	GGYRCC	1 cut(s)	380
BshVI	ATCGAT	1 cut(s)	141
BslFI	GGGAC	2 cut(s)	423, 689
BslI	CCNNNNNNNGG	3 cut(s)	268, 364, 518
BsmAI	GTCTC	3 cut(s)	52, 57, 562
BsmFI	GGGAC	2 cut(s)	423, 689
BsnI	GGCC	2 cut(s)	124, 567
Bso31I	GGTCTC	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	659
BspACI	CCGC	3 cut(s)	51, 262, 469
BspANI	GGCC	2 cut(s)	124, 567
BspCNI	CTCAG	4 cut(s)	124, 192, 589, 605
BspDI	ATCGAT	1 cut(s)	141
BspFNI	CGCG	2 cut(s)	7, 264
BspLI	GGNNCC	2 cut(s)	382, 439
BspMAI	CTGCAG	1 cut(s)	535
BspOI	GCTAGC	1 cut(s)	606
BspT107I	GGYRCC	1 cut(s)	380
BspTNI	GGTCTC	1 cut(s)	562
BsrI	ACTGG	4 cut(s)	24, 118, 519, 653
BssMI	GATC	1 cut(s)	659
BssNI	GRCGYC	1 cut(s)	463
Bst2UI	CCWGG	1 cut(s)	546
Bst4CI	ACNGT	1 cut(s)	250
BstACI	GRCGYC	1 cut(s)	463
BstC8I	GCNNGC	2 cut(s)	604, 608
BstDEI	CTNAG	4 cut(s)	132, 200, 576, 592
BstF5I	GGATG	6 cut(s)	102, 196, 218, 277, 460, 507
BstFNI	CGCG	2 cut(s)	7, 264
BstHHI	GCGC	1 cut(s)	624
BstKTI	GATC	1 cut(s)	662
BstMAI	GTCTC	3 cut(s)	52, 57, 562
BstMBI	GATC	1 cut(s)	659
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	546
BstPAI	GACNNNNGTC	1 cut(s)	681
BstSCI	CCNGG	1 cut(s)	544
BstSFI	CTRYAG	1 cut(s)	531
BstUI	CGCG	2 cut(s)	7, 264
BstV1I	GCAGC	2 cut(s)	355, 545
BstXI	CCANNNNNNTGG	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	124, 567
BsuTUI	ATCGAT	1 cut(s)	141
BtrI	CACGTC	1 cut(s)	176
BtsCI	GGATG	6 cut(s)	102, 196, 218, 277, 460, 507
BtsIMutI	CAGTG	3 cut(s)	17, 512, 584
Cac8I	GCNNGC	2 cut(s)	604, 608
CfoI	GCGC	1 cut(s)	624
Cfr13I	GGNCC	3 cut(s)	122, 355, 437
ClaI	ATCGAT	1 cut(s)	141
CseI	GACGC	3 cut(s)	13, 253, 471
Csp6I	GTAC	3 cut(s)	318, 487, 589
CviAII	CATG	3 cut(s)	268, 349, 361
CviJI	RGCY	7 cut(s)	124, 185, 368, 536, 567, 583, 610
CviKI_1	RGCY	7 cut(s)	124, 185, 368, 536, 567, 583, 610
CviQI	GTAC	3 cut(s)	318, 487, 589
DdeI	CTNAG	4 cut(s)	132, 200, 576, 592
DpnI	GATC	1 cut(s)	661
DpnII	GATC	1 cut(s)	659
DraIII	CACNNNGTG	1 cut(s)	579
EaeI	YGGCCR	1 cut(s)	565
Eco31I	GGTCTC	1 cut(s)	562
Eco47I	GGWCC	2 cut(s)	355, 437
Eco57I	CTGAAG	2 cut(s)	453, 466
EcoO109I	RGGNCCY	2 cut(s)	355, 437
EcoRII	CCWGG	1 cut(s)	544
FaeI	CATG	3 cut(s)	271, 352, 364
FaqI	GGGAC	2 cut(s)	423, 689
FatI	CATG	3 cut(s)	267, 348, 360
Fnu4HI	GCNGC	2 cut(s)	369, 534
FokI	GGATG	6 cut(s)	109, 203, 225, 284, 467, 514
Fsp4HI	GCNGC	2 cut(s)	369, 534
FspBI	CTAG	4 cut(s)	329, 603, 611, 681
GlaI	GCGC	1 cut(s)	623
GluI	GCNGC	2 cut(s)	369, 534
HaeIII	GGCC	2 cut(s)	124, 567
HgaI	GACGC	3 cut(s)	13, 253, 471
HhaI	GCGC	1 cut(s)	624
Hin1I	GRCGYC	1 cut(s)	463
Hin1II	CATG	3 cut(s)	271, 352, 364
Hin6I	GCGC	1 cut(s)	622
HinP1I	GCGC	1 cut(s)	622
HinfI	GANTC	2 cut(s)	45, 677
HphI	GGTGA	1 cut(s)	248
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	6 cut(s)	165, 201, 293, 646, 671, 687
Hpy188III	TCNNGA	2 cut(s)	329, 341
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	7 cut(s)	203, 288, 428, 451, 490, 648, 666
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	175
HpyCH4V	TGCA	2 cut(s)	245, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	4 cut(s)	132, 200, 576, 592
HpySE526I	ACGT	1 cut(s)	175
Hsp92I	GRCGYC	1 cut(s)	463
Hsp92II	CATG	3 cut(s)	271, 352, 364
HspAI	GCGC	1 cut(s)	622
Kzo9I	GATC	1 cut(s)	659
Lsp1109I	GCAGC	2 cut(s)	355, 545
MaeI	CTAG	4 cut(s)	329, 603, 611, 681
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	1 cut(s)	661
MboI	GATC	1 cut(s)	659
MboII	GAAGA	1 cut(s)	533
MfeI	CAATTG	1 cut(s)	561
MlsI	TGGCCA	1 cut(s)	567
MluCI	AATT	4 cut(s)	29, 335, 424, 561
MluNI	TGGCCA	1 cut(s)	567
MlyI	GAGTC	2 cut(s)	54, 671
MmeI	TCCRAC	2 cut(s)	439, 665
MnlI	CCTC	6 cut(s)	195, 325, 346, 368, 406, 512
Mox20I	TGGCCA	1 cut(s)	567
MroXI	GAANNNNTTC	2 cut(s)	13, 76
MscI	TGGCCA	1 cut(s)	567
MseI	TTAA	2 cut(s)	32, 323
MslI	CAYNNNNRTG	1 cut(s)	629
Msp20I	TGGCCA	1 cut(s)	567
MspR9I	CCNGG	1 cut(s)	546
MunI	CAATTG	1 cut(s)	561
MvaI	CCWGG	1 cut(s)	546
MvnI	CGCG	2 cut(s)	7, 264
MwoI	GCNNNNNNNGC	1 cut(s)	389
NdeII	GATC	1 cut(s)	659
NheI	GCTAGC	1 cut(s)	602
NlaIII	CATG	3 cut(s)	271, 352, 364
NlaIV	GGNNCC	2 cut(s)	382, 439
NmuCI	GTSAC	1 cut(s)	215
PdmI	GAANNNNTTC	2 cut(s)	13, 76
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	2 cut(s)	370, 535
PleI	GAGTC	2 cut(s)	53, 671
PpsI	GAGTC	2 cut(s)	53, 671
PpuMI	RGGWCCY	2 cut(s)	355, 437
PshAI	GACNNNNGTC	1 cut(s)	681
Psp5II	RGGWCCY	2 cut(s)	355, 437
Psp6I	CCWGG	1 cut(s)	544
PspGI	CCWGG	1 cut(s)	544
PspN4I	GGNNCC	2 cut(s)	382, 439
PspPI	GGNCC	3 cut(s)	122, 355, 437
PspPPI	RGGWCCY	2 cut(s)	355, 437
PstI	CTGCAG	1 cut(s)	535
RsaI	GTAC	3 cut(s)	319, 488, 590
RsaNI	GTAC	3 cut(s)	318, 487, 589
RseI	CAYNNNNRTG	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	32, 323
SatI	GCNGC	2 cut(s)	369, 534
Sau3AI	GATC	1 cut(s)	659
Sau96I	GGNCC	3 cut(s)	122, 355, 437
SchI	GAGTC	2 cut(s)	54, 671
ScrFI	CCNGG	1 cut(s)	546
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	355, 437
SmiMI	CAYNNNNRTG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	29, 335, 424, 561
SsiI	CCGC	3 cut(s)	51, 262, 469
SspMI	CTAG	4 cut(s)	329, 603, 611, 681
StyD4I	CCNGG	1 cut(s)	544
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	3 cut(s)	141, 172, 284
TasI	AATT	4 cut(s)	29, 335, 424, 561
Tru1I	TTAA	2 cut(s)	32, 323
Tru9I	TTAA	2 cut(s)	32, 323
TscAI	CASTG	3 cut(s)	24, 519, 584
TseFI	GTSAC	1 cut(s)	215
TseI	GCWGC	2 cut(s)	368, 533
Tsp45I	GTSAC	1 cut(s)	215
TspDTI	ATGAA	2 cut(s)	164, 207
TspGWI	ACGGA	1 cut(s)	203
TspRI	CASTG	3 cut(s)	24, 519, 584
VpaK11BI	GGWCC	2 cut(s)	355, 437
XapI	RAATTY	1 cut(s)	335
XbaI	TCTAGA	1 cut(s)	328
XmnI	GAANNNNTTC	2 cut(s)	13, 76
XspI	CTAG	4 cut(s)	329, 603, 611, 681

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.