Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

7027851 .. 7029343

Gene Structure 1493 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1065600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGTGGGGACATTCTTTCTTTGAGACTGCCTCGAGGCTTTTCCATCAACGTTCCTCTCTATACAAAATTCTTGTTGTTGTCACTATGAGTAATTTGGGTTCGAAAGAAGCTGAGTTTAGCATAGATTATGACTACCTGATCGTTGCAATAGGAGCCAAAACAAACACATTCAACACTCCTGCTGTTGAGCAATATGCTCATTTCTTGAAGGGAATAGAAGACGCTGTGAGGATCCGACAGACTGTGATTGACTGTTTCGAAAGGACAAGTCTTCCTAGCGTAAGCGAAGAAGAGAAGAAGAAACTTCTGAGTTTTGTATGTGTTGGTGGCGGTCCAGTTGGTCTTCATGACTTTGTAAAAGAGGATTTAGCCAAATTATACCCTTCAGTTATAGGATACGTAAAAATTACTGTGATAGAGGCAAGCGATCATTTTTTAAACATGTTTGACAAGAGAATTACTTCATTTGCTGAAGGGAAGTTCTTCCGAGACAGAATTGATGTAAAAATAGGTTCTGTTTGGATCAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

178

Amino Acids

20.08

Weight (kDa)

6.97

Isoelectric Point (pI)

31.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	36 - 172	8.8e-15	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	31
AciI	CCGC	1 cut(s)	330
AclI	AACGTT	1 cut(s)	49
AclWI	GGATC	3 cut(s)	226, 239, 530
AcsI	RAATTY	1 cut(s)	66
AcuI	CTGAAG	2 cut(s)	369, 492
AflIII	ACRYGT	1 cut(s)	441
AgsI	TTSAA	2 cut(s)	172, 208
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	17, 483
AlwI	GGATC	3 cut(s)	226, 239, 530
Ama87I	CYCGRG	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	66
Asp700I	GAANNNNTTC	2 cut(s)	460, 482
AspS9I	GGNCC	1 cut(s)	332
AsuII	TTCGAA	2 cut(s)	101, 258
AvaI	CYCGRG	1 cut(s)	31
AvaII	GGWCC	1 cut(s)	332
BamHI	GGATCC	1 cut(s)	231
BbsI	GAAGAC	3 cut(s)	225, 263, 335
BccI	CCATC	1 cut(s)	51
BciVI	GTATCC	1 cut(s)	389
BcoDI	GTCTC	2 cut(s)	17, 483
BfaI	CTAG	1 cut(s)	276
BfuI	GTATCC	1 cut(s)	389
Bme18I	GGWCC	1 cut(s)	332
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	1 cut(s)	332
BmiI	GGNNCC	2 cut(s)	154, 233
BpiI	GAAGAC	3 cut(s)	225, 263, 335
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu14I	TTCGAA	2 cut(s)	101, 258
BsaAI	YACGTR	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	335
BseMII	CTCAG	2 cut(s)	102, 299
BseNI	ACTGG	1 cut(s)	335
BsiHKCI	CYCGRG	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	2 cut(s)	17, 483
BsmFI	GGGAC	1 cut(s)	21
BsoBI	CYCGRG	1 cut(s)	31
Bsp119I	TTCGAA	2 cut(s)	101, 258
Bsp143I	GATC	4 cut(s)	138, 231, 427, 522
BspACI	CCGC	1 cut(s)	330
BspCNI	CTCAG	2 cut(s)	103, 300
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	154, 233
BspPI	GGATC	3 cut(s)	226, 239, 530
BspT104I	TTCGAA	2 cut(s)	101, 258
BsrI	ACTGG	1 cut(s)	335
BssMI	GATC	4 cut(s)	138, 231, 427, 522
Bst4CI	ACNGT	3 cut(s)	244, 254, 412
Bst6I	CTCTTC	1 cut(s)	285
BstBAI	YACGTR	1 cut(s)	400
BstBI	TTCGAA	2 cut(s)	101, 258
BstC8I	GCNNGC	1 cut(s)	424
BstDEI	CTNAG	2 cut(s)	111, 308
BstKTI	GATC	4 cut(s)	141, 234, 430, 525
BstMAI	GTCTC	2 cut(s)	17, 483
BstMBI	GATC	4 cut(s)	138, 231, 427, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNSI	RCATGY	1 cut(s)	445
BstSNI	TACGTA	1 cut(s)	400
BstV2I	GAAGAC	3 cut(s)	225, 263, 335
BstX2I	RGATCY	1 cut(s)	231
BstYI	RGATCY	1 cut(s)	231
BsuI	GTATCC	1 cut(s)	389
Cac8I	GCNNGC	1 cut(s)	424
CciI	TCATGA	1 cut(s)	346
Cfr13I	GGNCC	1 cut(s)	332
CseI	GACGC	1 cut(s)	230
CviAII	CATG	2 cut(s)	347, 442
CviJI	RGCY	4 cut(s)	37, 110, 155, 371
CviKI_1	RGCY	4 cut(s)	37, 110, 155, 371
DdeI	CTNAG	2 cut(s)	111, 308
DpnI	GATC	4 cut(s)	140, 233, 429, 524
DpnII	GATC	4 cut(s)	138, 231, 427, 522
DraI	TTTAAA	1 cut(s)	438
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
Eco105I	TACGTA	1 cut(s)	400
Eco47I	GGWCC	1 cut(s)	332
Eco57I	CTGAAG	2 cut(s)	369, 492
Eco88I	CYCGRG	1 cut(s)	31
FaeI	CATG	2 cut(s)	350, 445
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	2 cut(s)	346, 441
FspBI	CTAG	1 cut(s)	276
HgaI	GACGC	1 cut(s)	230
Hin1II	CATG	2 cut(s)	350, 445
Hpy188I	TCNGA	3 cut(s)	236, 309, 488
Hpy188III	TCNNGA	2 cut(s)	205, 347
HpyAV	CCTTC	3 cut(s)	202, 393, 467
HpyCH4III	ACNGT	3 cut(s)	244, 254, 412
HpyCH4IV	ACGT	2 cut(s)	49, 399
HpyCH4V	TGCA	1 cut(s)	146
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpyF3I	CTNAG	2 cut(s)	111, 308
HpySE526I	ACGT	2 cut(s)	49, 399
Hsp92II	CATG	2 cut(s)	350, 445
Kzo9I	GATC	4 cut(s)	138, 231, 427, 522
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	3 cut(s)	149, 192, 348
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	2 cut(s)	49, 399
MaeIII	GTNAC	1 cut(s)	79
MalI	GATC	4 cut(s)	140, 233, 429, 524
MboI	GATC	4 cut(s)	138, 231, 427, 522
MboII	GAAGA	8 cut(s)	230, 263, 299, 302, 307, 310, 335, 475
MflI	RGATCY	1 cut(s)	231
MluCI	AATT	6 cut(s)	66, 91, 374, 405, 456, 495
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	6 cut(s)	27, 40, 64, 222, 355, 412
MroXI	GAANNNNTTC	2 cut(s)	460, 482
MseI	TTAA	1 cut(s)	437
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	4 cut(s)	138, 231, 427, 522
NlaIII	CATG	2 cut(s)	350, 445
NlaIV	GGNNCC	2 cut(s)	154, 233
NmuCI	GTSAC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	445
NspV	TTCGAA	2 cut(s)	101, 258
PaeR7I	CTCGAG	1 cut(s)	31
PagI	TCATGA	1 cut(s)	346
PciI	ACATGT	1 cut(s)	441
PdmI	GAANNNNTTC	2 cut(s)	460, 482
Ppu21I	YACGTR	1 cut(s)	400
PscI	ACATGT	1 cut(s)	441
Psp1406I	AACGTT	1 cut(s)	49
PspN4I	GGNNCC	2 cut(s)	154, 233
PspPI	GGNCC	1 cut(s)	332
PspXI	VCTCGAGB	1 cut(s)	31
PsrI	GAACNNNNNNTAC	2 cut(s)	82, 114
PsuI	RGATCY	1 cut(s)	231
SaqAI	TTAA	1 cut(s)	437
Sau3AI	GATC	4 cut(s)	138, 231, 427, 522
Sau96I	GGNCC	1 cut(s)	332
SetI	ASST	5 cut(s)	52, 112, 138, 402, 514
Sfr274I	CTCGAG	1 cut(s)	31
SfuI	TTCGAA	2 cut(s)	101, 258
SinI	GGWCC	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	31
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SnaBI	TACGTA	1 cut(s)	400
Sse9I	AATT	6 cut(s)	66, 91, 374, 405, 456, 495
SsiI	CCGC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	244, 254, 412
TaiI	ACGT	2 cut(s)	52, 402
TaqI	TCGA	3 cut(s)	32, 101, 258
TasI	AATT	6 cut(s)	66, 91, 374, 405, 456, 495
Tru1I	TTAA	1 cut(s)	437
Tru9I	TTAA	1 cut(s)	437
TseFI	GTSAC	1 cut(s)	79
Tsp45I	GTSAC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	335, 453
VpaK11BI	GGWCC	1 cut(s)	332
XapI	RAATTY	1 cut(s)	66
XceI	RCATGY	1 cut(s)	445
XhoI	CTCGAG	1 cut(s)	31
XmnI	GAANNNNTTC	2 cut(s)	460, 482
XspI	CTAG	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.