Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

78984383 .. 78985709

Gene Structure 1327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG558600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAAGCAAATTGGTCAGGCTAACAGACGTGTTTTGGCTACTGATGAATGGCTGAGGGTGGAAGGATGTGATGGCGTATATGCTGTAGGTGATTGTGCAACAGTAAACCAACGCAGGATCATGGAAGATATTTCACATATAATTAGTAAAGCAGACACAGGCAAGTCCGGTACATTAAGTCTTGAGGAGTTTCATGGAGTTATAGACGACGTTATGGAGAGGTATCCTCAATTGGAGCTTCATTTGAAGAGTAAACAGATGTCAAGTATTCATGATTTACTGAAAAATAGTTCAGAAAAGTATTCCAGTACTGAAGTAGATATTGAGACCTTTAAATCAGCTCTTTCTCAAGCAGATTGTCAGATGAAAAACCTTCCTGCAACAGCCCAGGTAGCTGCTCAACAAGGTGCGTACCTTGCCAACTGTTTCAACCGTATGGAGGAGTGTGAGAAATATCCTGAAGGTCCCCTACGGTTTAGGGGTGAGGGACGCCACCGTTTTCATCCCTTCAGGTATAAGCATCTTGGGATGTTTGCTCCTCTCGGAGGAGAACAAACTGCGTTTCAACTTCCAGGAGATTGGGTTTCAATTGGTTATAGCAGCCAGTGGCTCTGGTACTCGGTATATGTTAGCAAGCTAGTGAGTTGGCGCACAAGGGTGTTGGTGGTATCTGATTGGGGAAGGCGATTTATATTTGGGAGGGACTCGAGTCGCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

239

Amino Acids

27.31

Weight (kDa)

7.67

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NDH2_C	PF22366	174 - 235	6.1e-15	NDH2 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AcuI	CTGAAG	3 cut(s)	333, 480, 493
AcyI	GRCGYC	1 cut(s)	490
AfaI	GTAC	4 cut(s)	172, 310, 413, 617
AfiI	CCNNNNNNNGG	2 cut(s)	439, 545
AflIII	ACRYGT	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	247, 430, 566, 588
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	2 cut(s)	387, 571
AleI	CACNNNNGTG	1 cut(s)	656
AluBI	AGCT	4 cut(s)	238, 341, 395, 637
AluI	AGCT	4 cut(s)	238, 341, 395, 637
Alw26I	GTCTC	1 cut(s)	320
AlwI	GGATC	1 cut(s)	125
Ama87I	CYCGRG	1 cut(s)	706
ApeKI	GCWGC	2 cut(s)	395, 600
AspLEI	GCGC	1 cut(s)	651
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	2 cut(s)	101, 494
AvaI	CYCGRG	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	464
BarI	GAAGNNNNNNTAC	2 cut(s)	453, 485
BbvCI	CCTCAGC	1 cut(s)	53
BbvI	GCAGC	2 cut(s)	382, 612
BccI	CCATC	1 cut(s)	65
BciT130I	CCWGG	2 cut(s)	389, 573
BciVI	GTATCC	1 cut(s)	234
BcoDI	GTCTC	1 cut(s)	320
BfaI	CTAG	1 cut(s)	638
BfmI	CTRYAG	1 cut(s)	84
BfuI	GTATCC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	396, 601
BlsI	GCNGC	2 cut(s)	397, 602
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	2 cut(s)	389, 573
Bme18I	GGWCC	1 cut(s)	464
BmeT110I	CYCGRG	1 cut(s)	706
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	464
BmiI	GGNNCC	1 cut(s)	466
BmrFI	CCNGG	2 cut(s)	389, 573
BmsI	GCATC	1 cut(s)	529
BoxI	GACNNNNGTC	1 cut(s)	708
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	1 cut(s)	53
BpuEI	CTTGAG	2 cut(s)	203, 333
BsaHI	GRCGYC	1 cut(s)	490
BsaI	GGTCTC	1 cut(s)	320
BsaJI	CCNNGG	1 cut(s)	387
BsaWI	WCCGGW	1 cut(s)	167
BsaXI	ACNNNNNCTCC	2 cut(s)	567, 597
Bsc4I	CCNNNNNNNGG	2 cut(s)	439, 545
Bse1I	ACTGG	2 cut(s)	306, 604
BseBI	CCWGG	2 cut(s)	389, 573
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	3 cut(s)	71, 502, 534
BseLI	CCNNNNNNNGG	2 cut(s)	439, 545
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	306, 604
BseRI	GAGGAG	4 cut(s)	200, 455, 528, 561
BseXI	GCAGC	2 cut(s)	382, 612
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	1 cut(s)	168
BslFI	GGGAC	3 cut(s)	450, 501, 716
BslI	CCNNNNNNNGG	2 cut(s)	439, 545
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	3 cut(s)	450, 501, 716
Bso31I	GGTCTC	1 cut(s)	320
BsoBI	CYCGRG	1 cut(s)	706
Bsp143I	GATC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	45
BspHI	TCATGA	1 cut(s)	271
BspLI	GGNNCC	1 cut(s)	466
BspPI	GGATC	1 cut(s)	125
BspTNI	GGTCTC	1 cut(s)	320
BsrI	ACTGG	2 cut(s)	306, 604
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	1 cut(s)	117
BssNI	GRCGYC	1 cut(s)	490
Bst2UI	CCWGG	2 cut(s)	389, 573
Bst4CI	ACNGT	5 cut(s)	103, 425, 434, 474, 497
Bst6I	CTCTTC	1 cut(s)	242
BstACI	GRCGYC	1 cut(s)	490
BstC8I	GCNNGC	1 cut(s)	635
BstDEI	CTNAG	1 cut(s)	53
BstENI	CCTNNNNNAGG	1 cut(s)	543
BstF5I	GGATG	3 cut(s)	71, 502, 534
BstHHI	GCGC	1 cut(s)	651
BstKTI	GATC	1 cut(s)	120
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	1 cut(s)	117
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 416
BstNI	CCWGG	2 cut(s)	389, 573
BstPAI	GACNNNNGTC	1 cut(s)	708
BstSCI	CCNGG	2 cut(s)	387, 571
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	382, 612
BstXI	CCANNNNNNTGG	1 cut(s)	579
BsuI	GTATCC	1 cut(s)	234
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	3 cut(s)	71, 502, 534
BtsIMutI	CAGTG	1 cut(s)	611
Cac8I	GCNNGC	1 cut(s)	635
CciI	TCATGA	1 cut(s)	271
CfoI	GCGC	1 cut(s)	651
Cfr13I	GGNCC	1 cut(s)	464
CseI	GACGC	1 cut(s)	498
Csp6I	GTAC	4 cut(s)	171, 309, 412, 616
CviAII	CATG	3 cut(s)	121, 194, 272
CviQI	GTAC	4 cut(s)	171, 309, 412, 616
DdeI	CTNAG	1 cut(s)	53
DpnI	GATC	1 cut(s)	119
DpnII	GATC	1 cut(s)	117
DraI	TTTAAA	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	242
EarI	CTCTTC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	3 cut(s)	333, 480, 493
Eco88I	CYCGRG	1 cut(s)	706
EcoNI	CCTNNNNNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	387, 571
FaeI	CATG	3 cut(s)	124, 197, 275
FaqI	GGGAC	3 cut(s)	450, 501, 716
FatI	CATG	3 cut(s)	120, 193, 271
Fnu4HI	GCNGC	2 cut(s)	396, 601
FokI	GGATG	3 cut(s)	78, 489, 541
Fsp4HI	GCNGC	2 cut(s)	396, 601
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	1 cut(s)	650
GluI	GCNGC	2 cut(s)	396, 601
HapII	CCGG	1 cut(s)	168
HgaI	GACGC	1 cut(s)	498
HhaI	GCGC	1 cut(s)	651
Hin1I	GRCGYC	1 cut(s)	490
Hin1II	CATG	3 cut(s)	124, 197, 275
Hin6I	GCGC	1 cut(s)	649
HinP1I	GCGC	1 cut(s)	649
HinfI	GANTC	2 cut(s)	704, 709
HpaII	CCGG	1 cut(s)	168
HphI	GGTGA	2 cut(s)	101, 494
Hpy166II	GTNNAC	2 cut(s)	106, 254
Hpy188I	TCNGA	4 cut(s)	295, 363, 545, 673
Hpy188III	TCNNGA	3 cut(s)	182, 272, 458
Hpy8I	GTNNAC	2 cut(s)	106, 254
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	5 cut(s)	56, 383, 455, 517, 675
HpyCH4III	ACNGT	5 cut(s)	103, 425, 434, 474, 497
HpyCH4IV	ACGT	2 cut(s)	28, 210
HpyCH4V	TGCA	2 cut(s)	98, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 416
HpyF3I	CTNAG	1 cut(s)	53
HpySE526I	ACGT	2 cut(s)	28, 210
Hsp92I	GRCGYC	1 cut(s)	490
Hsp92II	CATG	3 cut(s)	124, 197, 275
HspAI	GCGC	1 cut(s)	649
Kzo9I	GATC	1 cut(s)	117
LmnI	GCTCC	2 cut(s)	235, 541
Lsp1109I	GCAGC	2 cut(s)	382, 612
LweI	GCATC	1 cut(s)	529
MaeI	CTAG	1 cut(s)	638
MaeII	ACGT	2 cut(s)	28, 210
MalI	GATC	1 cut(s)	119
MboI	GATC	1 cut(s)	117
MboII	GAAGA	2 cut(s)	137, 259
MfeI	CAATTG	2 cut(s)	230, 588
MluCI	AATT	4 cut(s)	9, 141, 230, 588
MlyI	GAGTC	2 cut(s)	698, 718
MnlI	CCTC	9 cut(s)	48, 178, 213, 237, 433, 478, 539, 549, 693
MseI	TTAA	2 cut(s)	176, 333
MslI	CAYNNNNRTG	1 cut(s)	656
MspI	CCGG	1 cut(s)	168
MspR9I	CCNGG	2 cut(s)	389, 573
MunI	CAATTG	2 cut(s)	230, 588
MvaI	CCWGG	2 cut(s)	389, 573
MwoI	GCNNNNNNNGC	2 cut(s)	392, 416
NdeII	GATC	1 cut(s)	117
NlaIII	CATG	3 cut(s)	124, 197, 275
NlaIV	GGNNCC	1 cut(s)	466
OliI	CACNNNNGTG	1 cut(s)	656
PaeR7I	CTCGAG	1 cut(s)	706
PagI	TCATGA	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	397, 602
PleI	GAGTC	2 cut(s)	698, 717
PpsI	GAGTC	2 cut(s)	698, 717
PpuMI	RGGWCCY	1 cut(s)	464
PshAI	GACNNNNGTC	1 cut(s)	708
Psp5II	RGGWCCY	1 cut(s)	464
Psp6I	CCWGG	2 cut(s)	387, 571
PspGI	CCWGG	2 cut(s)	387, 571
PspN4I	GGNNCC	1 cut(s)	466
PspPI	GGNCC	1 cut(s)	464
PspPPI	RGGWCCY	1 cut(s)	464
PspXI	VCTCGAGB	1 cut(s)	706
RsaI	GTAC	4 cut(s)	172, 310, 413, 617
RsaNI	GTAC	4 cut(s)	171, 309, 412, 616
RseI	CAYNNNNRTG	1 cut(s)	656
SaqAI	TTAA	2 cut(s)	176, 333
SatI	GCNGC	2 cut(s)	396, 601
Sau3AI	GATC	1 cut(s)	117
Sau96I	GGNCC	1 cut(s)	464
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	2 cut(s)	698, 718
ScrFI	CCNGG	2 cut(s)	389, 573
SfaNI	GCATC	1 cut(s)	529
SfcI	CTRYAG	1 cut(s)	84
Sfr274I	CTCGAG	1 cut(s)	706
SinI	GGWCC	1 cut(s)	464
SlaI	CTCGAG	1 cut(s)	706
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	3 cut(s)	182, 348, 706
SmoI	CTYRAG	3 cut(s)	182, 348, 706
Sse9I	AATT	4 cut(s)	9, 141, 230, 588
SspMI	CTAG	1 cut(s)	638
StyD4I	CCNGG	2 cut(s)	387, 571
TaaI	ACNGT	5 cut(s)	103, 425, 434, 474, 497
TaiI	ACGT	2 cut(s)	31, 213
TaqI	TCGA	1 cut(s)	707
TasI	AATT	4 cut(s)	9, 141, 230, 588
TatI	WGTACW	1 cut(s)	308
Tru1I	TTAA	2 cut(s)	176, 333
Tru9I	TTAA	2 cut(s)	176, 333
TscAI	CASTG	1 cut(s)	611
TseI	GCWGC	2 cut(s)	395, 600
TspDTI	ATGAA	7 cut(s)	17, 60, 182, 230, 260, 380, 491
TspRI	CASTG	1 cut(s)	611
VpaK11BI	GGWCC	1 cut(s)	464
XagI	CCTNNNNNAGG	1 cut(s)	543
XhoI	CTCGAG	1 cut(s)	706
XspI	CTAG	1 cut(s)	638
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.