Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Forward (+)

5119189 .. 5119791

Gene Structure 603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1063600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTTCTCTGGGCAACTGGTATCGGGCCACGCCCTGAGATTATCGATTTTATGAAGCAGATTGGTCAGACCAATCGACGTGTTTTGGCTACGGATGAATGTCTGAGGGTGGAAGGATGTGACGGGGTGTATGCTTTAGGTGATTGTGCAACAGTAAATCAACACCGCGTCATGGATGATATTGTTTCGATATTCCGAAGGGCAAATAAGGACAACTCTGGTACATTAAGTCTAGAGGAATTTCAAGAAGTCATGGAGGACCTCATGGTAAGGTATCCTCAACTGAGCCTTCATTTGAAGAGCAAGCATATGAGGTATATTAATGAGTTGCTGGAAAATAGTTGGAAAAACCCCGAAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

121

Amino Acids

13.9

Weight (kDa)

5.59

Isoelectric Point (pI)

39.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyr_redox_2	PF07992	1 - 54	3.2e-07	Pyridine nucleotide-disulphide oxidoreductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	168
AciI	CCGC	1 cut(s)	166
AcsI	RAATTY	1 cut(s)	239
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflIII	ACRYGT	1 cut(s)	79
AgsI	TTSAA	2 cut(s)	245, 298
AjiI	CACGTC	1 cut(s)	80
AoxI	GGCC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	239
AseI	ATTAAT	1 cut(s)	321
AspS9I	GGNCC	2 cut(s)	26, 259
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	259
BciVI	GTATCC	1 cut(s)	285
BfaI	CTAG	1 cut(s)	233
BfuI	GTATCC	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	259
BmgBI	CACGTC	1 cut(s)	80
BmgT120I	GGNCC	2 cut(s)	26, 259
Bsa29I	ATCGAT	1 cut(s)	45
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	22
BseCI	ATCGAT	1 cut(s)	45
BseGI	GGATG	3 cut(s)	100, 122, 181
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMII	CTCAG	3 cut(s)	27, 95, 275
BseNI	ACTGG	1 cut(s)	22
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	28
BshVI	ATCGAT	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	172
BsnI	GGCC	1 cut(s)	28
BspACI	CCGC	1 cut(s)	166
BspANI	GGCC	1 cut(s)	28
BspCNI	CTCAG	3 cut(s)	28, 96, 276
BspDI	ATCGAT	1 cut(s)	45
BspFNI	CGCG	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	154
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	3 cut(s)	36, 104, 284
BstF5I	GGATG	3 cut(s)	100, 122, 181
BstFNI	CGCG	1 cut(s)	168
BstUI	CGCG	1 cut(s)	168
Bsu15I	ATCGAT	1 cut(s)	45
BsuI	GTATCC	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	28
BsuTUI	ATCGAT	1 cut(s)	45
BtrI	CACGTC	1 cut(s)	80
BtsCI	GGATG	3 cut(s)	100, 122, 181
Cac8I	GCNNGC	1 cut(s)	305
Cfr13I	GGNCC	2 cut(s)	26, 259
ClaI	ATCGAT	1 cut(s)	45
CseI	GACGC	1 cut(s)	157
Csp6I	GTAC	1 cut(s)	222
CviAII	CATG	3 cut(s)	172, 253, 265
CviJI	RGCY	3 cut(s)	28, 89, 288
CviKI_1	RGCY	3 cut(s)	28, 89, 288
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	3 cut(s)	36, 104, 284
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	259
EcoO109I	RGGNCCY	1 cut(s)	259
FaeI	CATG	3 cut(s)	175, 256, 268
FaiI	YATR	8 cut(s)	53, 132, 173, 254, 266, 309, 311, 318
FatI	CATG	3 cut(s)	171, 252, 264
FauNDI	CATATG	1 cut(s)	309
FokI	GGATG	3 cut(s)	107, 129, 188
FspBI	CTAG	1 cut(s)	233
HaeIII	GGCC	1 cut(s)	28
HgaI	GACGC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	175, 256, 268
HphI	GGTGA	1 cut(s)	152
Hpy188I	TCNGA	3 cut(s)	69, 105, 197
Hpy188III	TCNNGA	2 cut(s)	233, 245
Hpy99I	CGWCG	1 cut(s)	81
HpyAV	CCTTC	3 cut(s)	107, 192, 299
HpyCH4III	ACNGT	1 cut(s)	154
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	3 cut(s)	36, 104, 284
HpySE526I	ACGT	1 cut(s)	79
Hsp92II	CATG	3 cut(s)	175, 256, 268
LguI	GCTCTTC	1 cut(s)	293
LpnPI	CCDG	4 cut(s)	3, 48, 204, 317
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	1 cut(s)	79
MaeIII	GTNAC	1 cut(s)	119
MboII	GAAGA	1 cut(s)	310
MluCI	AATT	1 cut(s)	239
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	6 cut(s)	99, 229, 250, 272, 288, 306
MseI	TTAA	2 cut(s)	227, 321
MvnI	CGCG	1 cut(s)	168
NdeI	CATATG	1 cut(s)	309
NlaIII	CATG	3 cut(s)	175, 256, 268
NmuCI	GTSAC	1 cut(s)	119
PciSI	GCTCTTC	1 cut(s)	293
PpuMI	RGGWCCY	1 cut(s)	259
PshBI	ATTAAT	1 cut(s)	321
Psp5II	RGGWCCY	1 cut(s)	259
PspPI	GGNCC	2 cut(s)	26, 259
PspPPI	RGGWCCY	1 cut(s)	259
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SapI	GCTCTTC	1 cut(s)	293
SaqAI	TTAA	2 cut(s)	227, 321
Sau96I	GGNCC	2 cut(s)	26, 259
SetI	ASST	5 cut(s)	82, 142, 264, 275, 317
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	1 cut(s)	166
SspMI	CTAG	1 cut(s)	233
TaaI	ACNGT	1 cut(s)	154
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	45, 76, 188
TasI	AATT	1 cut(s)	239
Tru1I	TTAA	2 cut(s)	227, 321
Tru9I	TTAA	2 cut(s)	227, 321
TseFI	GTSAC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	119
TspDTI	ATGAA	3 cut(s)	68, 111, 281
TspGWI	ACGGA	1 cut(s)	107
VpaK11BI	GGWCC	1 cut(s)	259
VspI	ATTAAT	1 cut(s)	321
XapI	RAATTY	1 cut(s)	239
XbaI	TCTAGA	1 cut(s)	232
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.