Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001993.1

Orthogroup ID

OG0013833

Physical Location & Seq

Genomic Coordinates Reverse (-)

95353 .. 96412

Gene Structure 1060 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001993.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

atgtgcttggtttggtcgtacaggtttgacagaagaattacaaaatttgctgaagaaaagttctccagagatggtattgatgtgaaaacaggttcccaggttgtaaaagtaactgccaaggaaatctccactaaagaaagaacaacagggcatgtttcatctacaccgtatggtatgtgtctctgggcaactggtatcggggcacgccctgagattattgaatttatgaagcagattggtcaggctaacagacgtgttttggctactgatgaatggctgagggtggaaggatgtgatggcatatatgctgtaggtgattgtgcaacagtaaaccaacgcaggatcatggaagatatttcacatataattagtaaagcagacacaggcaagtccggtaccttaagtcttgaggagtttcatggagttatagacgacgttatggagaggtatcctcaattggagcttcatttgaagagtaaacagatgtcaagtattcatgatttactgaaaaatagttcagagaagtattccagtactgaagtagatattgagacctttaaatcagctctttctcaagcagattctcagatgaaaaaccttcctgcaacagcccaggtagctgctcaacaaggtgcctaccttgccaactgtttcaaccgtatggaggagtgtgagaagtatcctgaaggtcccctaaggtttaggggtgagggacgccaccgttttcatcccttcaggtgcccctctagtaaagtatcttttccagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001300 GO:0003674 GO:0003824 GO:0003954 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005758 GO:0005975 GO:0005996 GO:0006006 GO:0006066 GO:0006067 GO:0006082 GO:0006090 GO:0006091 GO:0006113 GO:0006116 GO:0006139 GO:0006163 GO:0006725 GO:0006732 GO:0006733 GO:0006734 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007568 GO:0007569 GO:0008150 GO:0008152 GO:0009117 GO:0009123 GO:0009126 GO:0009132 GO:0009135 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009179 GO:0009185 GO:0009199 GO:0009205 GO:0009259 GO:0009536 GO:0009987 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0016999 GO:0017144 GO:0019318 GO:0019362 GO:0019637 GO:0019655 GO:0019660 GO:0019666 GO:0019674 GO:0019693 GO:0019752 GO:0019866 GO:0019898 GO:0031090 GO:0031312 GO:0031314 GO:0031966 GO:0031967 GO:0031970 GO:0031974 GO:0031975 GO:0032502 GO:0032787 GO:0034308 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046483 GO:0046496 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0070013 GO:0071704 GO:0072521 GO:0072524 GO:1901135 GO:1901360 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_1 Pyr_redox_2

Protein Analysis

256

Amino Acids

28.89

Weight (kDa)

7.61

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013833)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20800
fragaria_vesca	FvH4_6g44591
malus_domestica	MD02G1063600.v1.1 MD14G1065500.v1.1 MD14G1065600.v1.1 MD17G1084300.v1.1
prunus_persica	Prupe.3G231300_v2.0.a1
pyrus_communis	pycom17g08140
rosa_chinensis	RchiOBHm_Chr2g0161871
rosa_laevigata	RLG00000021304
rosa_multiflora	Rmu_sc0001993.1_g000029
rosa_roxburghii	Rroxscaffold_2G00088490
rosa_samantha	Rh2AG558600 Rh2BG572100 Rh2CG542500 Rh2DG582000
rosa_wichuraiana	Rw2G046250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	395
AccB1I	GGYRCC	3 cut(s)	395, 632, 738
AclWI	GGATC	1 cut(s)	350
AcsI	RAATTY	2 cut(s)	44, 221
AcuI	CTGAAG	4 cut(s)	72, 558, 705, 718
AcyI	GRCGYC	1 cut(s)	715
AfaI	GTAC	3 cut(s)	20, 397, 535
AfiI	CCNNNNNNNGG	1 cut(s)	664
AflII	CTTAAG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	253
AgsI	TTSAA	3 cut(s)	221, 472, 655
AjiI	CACGTC	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	96, 612
AluBI	AGCT	3 cut(s)	463, 566, 620
AluI	AGCT	3 cut(s)	463, 566, 620
Alw26I	GTCTC	2 cut(s)	185, 545
AlwI	GGATC	1 cut(s)	350
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	2 cut(s)	44, 221
Asp718I	GGTACC	1 cut(s)	395
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	2 cut(s)	326, 719
AvaII	GGWCC	1 cut(s)	689
AxyI	CCTNAGG	1 cut(s)	695
BaeGI	GKGCMC	2 cut(s)	205, 743
BanI	GGYRCC	3 cut(s)	395, 632, 738
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	2 cut(s)	65, 290
BciT130I	CCWGG	2 cut(s)	98, 614
BciVI	GTATCC	2 cut(s)	459, 690
BcoDI	GTCTC	2 cut(s)	185, 545
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	309
BfrI	CTTAAG	1 cut(s)	400
BfuI	GTATCC	2 cut(s)	459, 690
BisI	GCNGC	1 cut(s)	621
BlsI	GCNGC	1 cut(s)	622
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	2 cut(s)	98, 614
Bme18I	GGWCC	1 cut(s)	689
BmgBI	CACGTC	1 cut(s)	254
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	5 cut(s)	94, 397, 634, 691, 740
BmrFI	CCNGG	2 cut(s)	98, 614
BplI	GAGNNNNNCTC	2 cut(s)	436, 468
BpmI	CTGGAG	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	2 cut(s)	428, 558
BsaHI	GRCGYC	1 cut(s)	715
BsaI	GGTCTC	1 cut(s)	545
BsaJI	CCNNGG	3 cut(s)	96, 117, 612
BsaWI	WCCGGW	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	1 cut(s)	664
Bse1I	ACTGG	2 cut(s)	196, 531
Bse21I	CCTNAGG	1 cut(s)	695
BseBI	CCWGG	2 cut(s)	98, 614
BseDI	CCNNGG	3 cut(s)	96, 117, 612
BseGI	GGATG	2 cut(s)	296, 727
BseLI	CCNNNNNNNGG	1 cut(s)	664
BseMII	CTCAG	3 cut(s)	201, 269, 599
BseNI	ACTGG	2 cut(s)	196, 531
BseRI	GAGGAG	2 cut(s)	425, 680
BseSI	GKGCMC	2 cut(s)	205, 743
BseXI	GCAGC	1 cut(s)	607
BshNI	GGYRCC	3 cut(s)	395, 632, 738
BsiSI	CCGG	1 cut(s)	393
BslFI	GGGAC	2 cut(s)	675, 726
BslI	CCNNNNNNNGG	1 cut(s)	664
BsmAI	GTCTC	2 cut(s)	185, 545
BsmFI	GGGAC	2 cut(s)	675, 726
Bso31I	GGTCTC	1 cut(s)	545
Bsp1286I	GDGCHC	2 cut(s)	205, 743
Bsp143I	GATC	1 cut(s)	342
BspCNI	CTCAG	3 cut(s)	202, 270, 598
BspHI	TCATGA	1 cut(s)	496
BspLI	GGNNCC	5 cut(s)	94, 397, 634, 691, 740
BspPI	GGATC	1 cut(s)	350
BspT107I	GGYRCC	3 cut(s)	395, 632, 738
BspTI	CTTAAG	1 cut(s)	400
BspTNI	GGTCTC	1 cut(s)	545
BsrI	ACTGG	2 cut(s)	196, 531
BssECI	CCNNGG	3 cut(s)	96, 117, 612
BssMI	GATC	1 cut(s)	342
BssNI	GRCGYC	1 cut(s)	715
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	2 cut(s)	98, 614
Bst4CI	ACNGT	5 cut(s)	168, 328, 650, 659, 722
Bst6I	CTCTTC	1 cut(s)	467
BstACI	GRCGYC	1 cut(s)	715
BstAFI	CTTAAG	1 cut(s)	400
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	4 cut(s)	210, 278, 585, 695
BstF5I	GGATG	2 cut(s)	296, 727
BstKTI	GATC	1 cut(s)	345
BstMAI	GTCTC	2 cut(s)	185, 545
BstMBI	GATC	1 cut(s)	342
BstMWI	GCNNNNNNNGC	2 cut(s)	617, 641
BstNI	CCWGG	2 cut(s)	98, 614
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	2 cut(s)	96, 612
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	2 cut(s)	205, 743
BstV1I	GCAGC	1 cut(s)	607
Bsu36I	CCTNAGG	1 cut(s)	695
BsuI	GTATCC	2 cut(s)	459, 690
BtrI	CACGTC	1 cut(s)	254
BtsCI	GGATG	2 cut(s)	296, 727
Cac8I	GCNNGC	1 cut(s)	205
CciI	TCATGA	1 cut(s)	496
Cfr13I	GGNCC	1 cut(s)	689
CseI	GACGC	1 cut(s)	723
Csp6I	GTAC	3 cut(s)	19, 396, 534
CviAII	CATG	4 cut(s)	152, 346, 419, 497
CviJI	RGCY	7 cut(s)	245, 263, 277, 463, 566, 611, 620
CviKI_1	RGCY	7 cut(s)	245, 263, 277, 463, 566, 611, 620
CviQI	GTAC	3 cut(s)	19, 396, 534
DdeI	CTNAG	4 cut(s)	210, 278, 585, 695
DpnI	GATC	1 cut(s)	344
DpnII	GATC	1 cut(s)	342
DraI	TTTAAA	1 cut(s)	559
Eam1104I	CTCTTC	1 cut(s)	467
EarI	CTCTTC	1 cut(s)	467
Eco130I	CCWWGG	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	545
Eco47I	GGWCC	1 cut(s)	689
Eco57I	CTGAAG	4 cut(s)	72, 558, 705, 718
Eco81I	CCTNAGG	1 cut(s)	695
EcoO109I	RGGNCCY	1 cut(s)	689
EcoRII	CCWGG	2 cut(s)	96, 612
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	4 cut(s)	155, 349, 422, 500
FaqI	GGGAC	2 cut(s)	675, 726
FatI	CATG	4 cut(s)	151, 345, 418, 496
Fnu4HI	GCNGC	1 cut(s)	621
FokI	GGATG	2 cut(s)	303, 714
Fsp4HI	GCNGC	1 cut(s)	621
FspBI	CTAG	1 cut(s)	747
GluI	GCNGC	1 cut(s)	621
GsuI	CTGGAG	1 cut(s)	49
HapII	CCGG	1 cut(s)	393
HgaI	GACGC	1 cut(s)	723
Hin1I	GRCGYC	1 cut(s)	715
Hin1II	CATG	4 cut(s)	155, 349, 422, 500
HinfI	GANTC	1 cut(s)	581
HpaII	CCGG	1 cut(s)	393
HphI	GGTGA	2 cut(s)	326, 719
Hpy166II	GTNNAC	2 cut(s)	331, 479
Hpy188I	TCNGA	2 cut(s)	520, 588
Hpy188III	TCNNGA	4 cut(s)	66, 407, 497, 683
Hpy8I	GTNNAC	2 cut(s)	331, 479
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	4 cut(s)	281, 608, 680, 742
HpyCH4III	ACNGT	5 cut(s)	168, 328, 650, 659, 722
HpyCH4IV	ACGT	2 cut(s)	253, 435
HpyCH4V	TGCA	2 cut(s)	323, 605
HpyF10VI	GCNNNNNNNGC	2 cut(s)	617, 641
HpyF3I	CTNAG	4 cut(s)	210, 278, 585, 695
HpySE526I	ACGT	2 cut(s)	253, 435
Hsp92I	GRCGYC	1 cut(s)	715
Hsp92II	CATG	4 cut(s)	155, 349, 422, 500
KpnI	GGTACC	1 cut(s)	399
Kzo9I	GATC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	1 cut(s)	607
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	253, 435
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	344
MboI	GATC	1 cut(s)	342
MboII	GAAGA	4 cut(s)	45, 65, 362, 484
MfeI	CAATTG	1 cut(s)	455
MhlI	GDGCHC	2 cut(s)	205, 743
MluCI	AATT	5 cut(s)	36, 44, 221, 366, 455
MnlI	CCTC	7 cut(s)	273, 403, 438, 462, 658, 703, 754
MseI	TTAA	2 cut(s)	401, 558
MspCI	CTTAAG	1 cut(s)	400
MspI	CCGG	1 cut(s)	393
MspR9I	CCNGG	2 cut(s)	98, 614
MunI	CAATTG	1 cut(s)	455
MvaI	CCWGG	2 cut(s)	98, 614
MwoI	GCNNNNNNNGC	2 cut(s)	617, 641
NdeII	GATC	1 cut(s)	342
NlaIII	CATG	4 cut(s)	155, 349, 422, 500
NlaIV	GGNNCC	5 cut(s)	94, 397, 634, 691, 740
NspI	RCATGY	1 cut(s)	155
PagI	TCATGA	1 cut(s)	496
PfeI	GAWTC	1 cut(s)	581
PkrI	GCNGC	1 cut(s)	622
PpuMI	RGGWCCY	1 cut(s)	689
Psp5II	RGGWCCY	1 cut(s)	689
Psp6I	CCWGG	2 cut(s)	96, 612
PspGI	CCWGG	2 cut(s)	96, 612
PspN4I	GGNNCC	5 cut(s)	94, 397, 634, 691, 740
PspPI	GGNCC	1 cut(s)	689
PspPPI	RGGWCCY	1 cut(s)	689
RsaI	GTAC	3 cut(s)	20, 397, 535
RsaNI	GTAC	3 cut(s)	19, 396, 534
SaqAI	TTAA	2 cut(s)	401, 558
SatI	GCNGC	1 cut(s)	621
Sau3AI	GATC	1 cut(s)	342
Sau96I	GGNCC	1 cut(s)	689
ScaI	AGTACT	1 cut(s)	535
ScrFI	CCNGG	2 cut(s)	98, 614
SduI	GDGCHC	2 cut(s)	205, 743
SfcI	CTRYAG	1 cut(s)	309
SinI	GGWCC	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	400, 407, 573
SmoI	CTYRAG	3 cut(s)	400, 407, 573
Sse9I	AATT	5 cut(s)	36, 44, 221, 366, 455
SspMI	CTAG	1 cut(s)	747
StyD4I	CCNGG	2 cut(s)	96, 612
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	5 cut(s)	168, 328, 650, 659, 722
TaiI	ACGT	2 cut(s)	256, 438
TasI	AATT	5 cut(s)	36, 44, 221, 366, 455
TatI	WGTACW	1 cut(s)	533
TfiI	GAWTC	1 cut(s)	581
Tru1I	TTAA	2 cut(s)	401, 558
Tru9I	TTAA	2 cut(s)	401, 558
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	8 cut(s)	147, 242, 285, 407, 455, 485, 605, 716
Vha464I	CTTAAG	1 cut(s)	400
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	2 cut(s)	44, 221
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	747
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.