FvH4_6g44980

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0018466
Physical Location & Seq
Forward (+)
34559039 .. 34560013
975 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g44980.t1

Sequence Viewer

Length: 975 bp
ATGGGTTGCTGTTTGGGCACCTCCAGGACCCCAAAACCAGTCCCACCACCTCCCAACCACCACCGCCACCACTTCCATTCCCAGAAACCCAACTCCCTGAGCCAAATCAACCCGAAAAGCTATGCCGAAAAACCCGAAACCAGATCCCCACCACCGCCACTGGCTGTGGAAGAAGAGTCCGTTAAGGAGGTCCTCTCCGAAACCCCAATAACCAAGCCCCAACACCCAGAAACTCCCCCGGAGAAAGTCACCCTTTCGCCTCCGAAAGAAGTGCCGAAACCGGCGGAAGACCAGCCCAAAATGCAAGCGGAGCCGGCGGTGTCGGAGGCTTCTCAGCTTTCAGAGGCTTGTGGGGTCAGCGAGAGCTACTCGTACTCCACGACTACTACCGCCACTACTATTGCAGACGCCAGAGAAGACGAAGCTACAAGTAACCGGAAGAGGGATTTGGGTCCGAGAGCAAATGGGTCTTCCGGGCCGGTGCGGCGTAAGCGTCCTTACTCCGGCGAAGTTGGTGGGCAGAGAGAGAGGGGGCCCAAGCCGCCGAGGAGGACGCCGGAGCCGGCTGTTGGGAAGAGGAACCGGACGGAGACTGCGTCGTCGTTCCGGGGAAGGGAGTCGGGTCAGCTGAGGAACATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCTAGGTCGAGGTCACCGGCTACCCGGAGTGGCGGTGGAGGGAGTCGAGCGGGTAGAGGAAAGAGCCCCGCGAAGGTGACCGGGCGAGCCGGTGGGAGTTCTTCCTCGGTGAGTGTGGAGGAGAGTGCGAAGAAGGGTAACTACAAAGAGTCTAAAGAGGAAGTGTTGGCCGGAAAGGAGGAGGTCATAGAGGAGCAATCAAACGACGGGGTTGCGCAGCCGCAGCAGGAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCGTTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

325

Amino Acids

34.81

Weight (kDa)

9.37

Isoelectric Point (pI)

74.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 598
Acc16I TGCGCA 1 cut(s) 903
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 737
AccII CGCG 1 cut(s) 758
AclWI GGATC 1 cut(s) 138
AcoI YGGCCR 1 cut(s) 855
AcyI GRCGYC 2 cut(s) 408, 554
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 5 cut(s) 442, 503, 569, 613, 760
AjnI CCWGG 1 cut(s) 23
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 5 cut(s) 120, 337, 366, 425, 628
AluI AGCT 5 cut(s) 120, 337, 366, 425, 628
Alw26I GTCTC 1 cut(s) 584
AlwI GGATC 1 cut(s) 138
AoxI GGCC 3 cut(s) 476, 533, 855
ApaI GGGCCC 1 cut(s) 537
ApeKI GCWGC 3 cut(s) 640, 904, 910
AspLEI GCGC 1 cut(s) 904
AspS9I GGNCC 6 cut(s) 27, 190, 452, 476, 533, 534
AsuC2I CCSGG 5 cut(s) 239, 475, 608, 712, 769
AsuHPI GGTGA 4 cut(s) 241, 693, 775, 808
AvaII GGWCC 3 cut(s) 27, 190, 452
BaeGI GKGCMC 2 cut(s) 20, 537
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 2 cut(s) 537, 755
BarI GAAGNNNNNNTAC 2 cut(s) 812, 844
BbsI GAAGAC 3 cut(s) 294, 423, 462
BbvCI CCTCAGC 1 cut(s) 629
BbvI GCAGC 3 cut(s) 652, 916, 922
BcgI CGANNNNNNTGC 4 cut(s) 253, 287, 881, 915
BciT130I CCWGG 1 cut(s) 25
BcnI CCSGG 5 cut(s) 239, 475, 608, 712, 769
BcoDI GTCTC 1 cut(s) 584
BfaI CTAG 2 cut(s) 690, 973
BglI GCCNNNNNGGC 1 cut(s) 484
BisI GCNGC 6 cut(s) 485, 542, 641, 905, 908, 911
BlsI GCNGC 6 cut(s) 486, 543, 642, 906, 909, 912
Bme1390I CCNGG 6 cut(s) 25, 239, 475, 608, 712, 769
Bme18I GGWCC 3 cut(s) 27, 190, 452
BmgT120I GGNCC 6 cut(s) 27, 190, 452, 476, 533, 534
BmiI GGNNCC 9 cut(s) 19, 29, 312, 453, 534, 535, 561, 581, 657
BmrFI CCNGG 6 cut(s) 25, 239, 475, 608, 712, 769
BpiI GAAGAC 3 cut(s) 294, 423, 462
BplI GAGNNNNNCTC 4 cut(s) 179, 211, 353, 385
BpmI CTGGAG 2 cut(s) 7, 684
Bpu10I CCTNAGC 2 cut(s) 98, 629
BpuMI CCSGG 5 cut(s) 239, 475, 608, 712, 769
BsaHI GRCGYC 2 cut(s) 408, 554
BsaJI CCNNGG 4 cut(s) 237, 545, 607, 792
BsaWI WCCGGW 2 cut(s) 435, 582
BsaXI ACNNNNNCTCC 6 cut(s) 359, 389, 581, 611, 706, 736
Bsc4I CCNNNNNNNGG 5 cut(s) 442, 503, 569, 613, 760
Bse118I RCCGGY 6 cut(s) 280, 313, 478, 562, 703, 776
Bse1I ACTGG 3 cut(s) 38, 165, 667
BseBI CCWGG 1 cut(s) 25
BseDI CCNNGG 4 cut(s) 237, 545, 607, 792
BseLI CCNNNNNNNGG 5 cut(s) 442, 503, 569, 613, 760
BseMII CTCAG 3 cut(s) 89, 347, 620
BseNI ACTGG 3 cut(s) 38, 165, 667
BseRI GAGGAG 4 cut(s) 562, 821, 881, 893
BseSI GKGCMC 2 cut(s) 20, 537
BseXI GCAGC 3 cut(s) 652, 916, 922
Bsh1236I CGCG 1 cut(s) 758
BshFI GGCC 3 cut(s) 478, 535, 857
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 2 cut(s) 26, 913
BslI CCNNNNNNNGG 5 cut(s) 442, 503, 569, 613, 760
BsmAI GTCTC 1 cut(s) 584
BsmFI GGGAC 2 cut(s) 26, 913
BsnI GGCC 3 cut(s) 478, 535, 857
Bsp120I GGGCCC 1 cut(s) 533
Bsp1286I GDGCHC 3 cut(s) 20, 537, 755
Bsp143I GATC 1 cut(s) 143
BspANI GGCC 3 cut(s) 478, 535, 857
BspCNI CTCAG 3 cut(s) 90, 346, 621
BspFNI CGCG 1 cut(s) 758
BspLI GGNNCC 9 cut(s) 19, 29, 312, 453, 534, 535, 561, 581, 657
BspPI GGATC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 737
BsrFI RCCGGY 6 cut(s) 280, 313, 478, 562, 703, 776
BsrI ACTGG 3 cut(s) 38, 165, 667
BssAI RCCGGY 6 cut(s) 280, 313, 478, 562, 703, 776
BssECI CCNNGG 4 cut(s) 237, 545, 607, 792
BssMI GATC 1 cut(s) 143
BssNI GRCGYC 2 cut(s) 408, 554
Bst2UI CCWGG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 682
Bst6I CTCTTC 3 cut(s) 168, 434, 569
BstACI GRCGYC 2 cut(s) 408, 554
BstC8I GCNNGC 4 cut(s) 306, 315, 564, 774
BstDEI CTNAG 3 cut(s) 98, 333, 629
BstEII GGTNACC 2 cut(s) 699, 763
BstFNI CGCG 1 cut(s) 758
BstHHI GCGC 1 cut(s) 904
BstKTI GATC 1 cut(s) 146
BstMAI GTCTC 1 cut(s) 584
BstMBI GATC 1 cut(s) 143
BstMWI GCNNNNNNNGC 8 cut(s) 15, 301, 310, 314, 484, 490, 541, 910
BstNI CCWGG 1 cut(s) 25
BstNSI RCATGY 1 cut(s) 640
BstPI GGTNACC 2 cut(s) 699, 763
BstSCI CCNGG 6 cut(s) 23, 237, 473, 606, 710, 767
BstSLI GKGCMC 2 cut(s) 20, 537
BstUI CGCG 1 cut(s) 758
BstV1I GCAGC 3 cut(s) 652, 916, 922
BstV2I GAAGAC 3 cut(s) 294, 423, 462
BstX2I RGATCY 1 cut(s) 143
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 3 cut(s) 478, 535, 857
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 4 cut(s) 306, 315, 564, 774
CfoI GCGC 1 cut(s) 904
Cfr10I RCCGGY 6 cut(s) 280, 313, 478, 562, 703, 776
Cfr13I GGNCC 6 cut(s) 27, 190, 452, 476, 533, 534
CseI GACGC 4 cut(s) 416, 482, 562, 585
Csp6I GTAC 1 cut(s) 373
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 1 cut(s) 637
CviQI GTAC 1 cut(s) 373
DdeI CTNAG 3 cut(s) 98, 333, 629
DpnI GATC 1 cut(s) 145
DpnII GATC 1 cut(s) 143
DrdI GACNNNNNNGTC 1 cut(s) 598
DseDI GACNNNNNNGTC 1 cut(s) 598
EaeI YGGCCR 1 cut(s) 855
Eam1104I CTCTTC 3 cut(s) 168, 434, 569
EarI CTCTTC 3 cut(s) 168, 434, 569
EciI GGCGGA 1 cut(s) 299
Eco24I GRGCYC 2 cut(s) 537, 755
Eco47I GGWCC 3 cut(s) 27, 190, 452
Eco91I GGTNACC 2 cut(s) 699, 763
EcoO109I RGGNCCY 3 cut(s) 27, 190, 533
EcoO65I GGTNACC 2 cut(s) 699, 763
EcoRII CCWGG 1 cut(s) 23
EcoT38I GRGCYC 2 cut(s) 537, 755
FaeI CATG 1 cut(s) 640
FaiI YATR 3 cut(s) 123, 638, 875
FalI AAGNNNNNCTT 2 cut(s) 237, 269
FaqI GGGAC 2 cut(s) 26, 913
FatI CATG 1 cut(s) 636
FauI CCCGC 2 cut(s) 730, 763
Fnu4HI GCNGC 6 cut(s) 485, 542, 641, 905, 908, 911
FriOI GRGCYC 2 cut(s) 537, 755
Fsp4HI GCNGC 6 cut(s) 485, 542, 641, 905, 908, 911
FspBI CTAG 2 cut(s) 690, 973
FspI TGCGCA 1 cut(s) 903
GlaI GCGC 1 cut(s) 903
GluI GCNGC 6 cut(s) 485, 542, 641, 905, 908, 911
GsuI CTGGAG 2 cut(s) 7, 684
HaeIII GGCC 3 cut(s) 478, 535, 857
HgaI GACGC 4 cut(s) 416, 482, 562, 585
HhaI GCGC 1 cut(s) 904
Hin1I GRCGYC 2 cut(s) 408, 554
Hin1II CATG 1 cut(s) 640
Hin6I GCGC 1 cut(s) 902
HinP1I GCGC 1 cut(s) 902
HinfI GANTC 5 cut(s) 176, 617, 730, 836, 926
HphI GGTGA 4 cut(s) 241, 693, 775, 808
Hpy188I TCNGA 5 cut(s) 199, 264, 325, 343, 456
Hpy99I CGWCG 3 cut(s) 601, 604, 896
HpyAV CCTTC 4 cut(s) 606, 754, 814, 916
HpyCH4III ACNGT 1 cut(s) 682
HpyCH4V TGCA 3 cut(s) 304, 404, 640
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 301, 310, 314, 484, 490, 541, 910
HpyF3I CTNAG 3 cut(s) 98, 333, 629
Hsp92I GRCGYC 2 cut(s) 408, 554
Hsp92II CATG 1 cut(s) 640
HspAI GCGC 1 cut(s) 902
KroI GCCGGC 2 cut(s) 313, 562
KroNI GCCGGC 2 cut(s) 315, 564
Kzo9I GATC 1 cut(s) 143
LmnI GCTCC 3 cut(s) 310, 559, 880
Lsp1109I GCAGC 3 cut(s) 652, 916, 922
MaeI CTAG 2 cut(s) 690, 973
MaeIII GTNAC 5 cut(s) 247, 431, 699, 763, 824
MalI GATC 1 cut(s) 145
MbiI CCGCTC 1 cut(s) 737
MboI GATC 1 cut(s) 143
MboII GAAGA 9 cut(s) 182, 185, 299, 428, 451, 462, 586, 780, 829
MflI RGATCY 1 cut(s) 143
MhlI GDGCHC 3 cut(s) 20, 537, 755
MlyI GAGTC 5 cut(s) 185, 626, 739, 845, 935
MmeI TCCRAC 1 cut(s) 303
MroNI GCCGGC 2 cut(s) 313, 562
MseI TTAA 1 cut(s) 183
MspA1I CMGCKG 2 cut(s) 628, 643
MspR9I CCNGG 6 cut(s) 25, 239, 475, 608, 712, 769
MvaI CCWGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 758
MwoI GCNNNNNNNGC 8 cut(s) 15, 301, 310, 314, 484, 490, 541, 910
NaeI GCCGGC 2 cut(s) 315, 564
NciI CCSGG 5 cut(s) 239, 475, 608, 712, 769
NdeII GATC 1 cut(s) 143
NgoMIV GCCGGC 2 cut(s) 313, 562
NlaIII CATG 1 cut(s) 640
NlaIV GGNNCC 9 cut(s) 19, 29, 312, 453, 534, 535, 561, 581, 657
NmeAIII GCCGAG 1 cut(s) 570
NmuCI GTSAC 3 cut(s) 247, 699, 763
NsbI TGCGCA 1 cut(s) 903
NspI RCATGY 1 cut(s) 640
PcsI WCGNNNNNNNCGW 3 cut(s) 377, 593, 692
PdiI GCCGGC 2 cut(s) 315, 564
PflFI GACNNNGTC 1 cut(s) 595
PfoI TCCNGGA 1 cut(s) 23
PkrI GCNGC 6 cut(s) 486, 543, 642, 906, 909, 912
PleI GAGTC 5 cut(s) 184, 625, 738, 844, 934
PpsI GAGTC 5 cut(s) 184, 625, 738, 844, 934
PpuMI RGGWCCY 2 cut(s) 27, 190
Psp5II RGGWCCY 2 cut(s) 27, 190
Psp6I CCWGG 1 cut(s) 23
PspEI GGTNACC 2 cut(s) 699, 763
PspGI CCWGG 1 cut(s) 23
PspN4I GGNNCC 9 cut(s) 19, 29, 312, 453, 534, 535, 561, 581, 657
PspOMI GGGCCC 1 cut(s) 533
PspPI GGNCC 6 cut(s) 27, 190, 452, 476, 533, 534
PspPPI RGGWCCY 2 cut(s) 27, 190
PsuI RGATCY 1 cut(s) 143
PsyI GACNNNGTC 1 cut(s) 595
PvuII CAGCTG 1 cut(s) 628
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 6 cut(s) 485, 542, 641, 905, 908, 911
Sau3AI GATC 1 cut(s) 143
Sau96I GGNCC 6 cut(s) 27, 190, 452, 476, 533, 534
SchI GAGTC 5 cut(s) 185, 626, 739, 845, 935
ScrFI CCNGG 6 cut(s) 25, 239, 475, 608, 712, 769
SduI GDGCHC 3 cut(s) 20, 537, 755
SinI GGWCC 3 cut(s) 27, 190, 452
SspMI CTAG 2 cut(s) 690, 973
StyD4I CCNGG 6 cut(s) 23, 237, 473, 606, 710, 767
TaaI ACNGT 1 cut(s) 682
TaqI TCGA 2 cut(s) 695, 733
TauI GCSGC 3 cut(s) 487, 544, 910
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 3 cut(s) 247, 699, 763
TseI GCWGC 3 cut(s) 640, 904, 910
Tsp45I GTSAC 3 cut(s) 247, 699, 763
TspDTI ATGAA 1 cut(s) 952
TspGWI ACGGA 2 cut(s) 169, 602
TspRI CASTG 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 595
VpaK11BI GGWCC 3 cut(s) 27, 190, 452
XceI RCATGY 1 cut(s) 640
XspI CTAG 2 cut(s) 690, 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.