pycom09g01690

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0018466
Physical Location & Seq
Reverse (-)
1302170 .. 1303240
1071 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g01690.1

Sequence Viewer

Length: 1071 bp
ATGGGTTGTTGTCTCGGCACCGCCAAGACCCAAAACCCACCGCCACCACACCACGACCCAAATGGCCCCAACAACAGCCACTTCCACGCCAGATCCTCCCTCGCGGAACCCCTCCAGACCCGTATCCCAAAACCCCAACTCAGAGCCGCTGCACCGCCGAACTCACGGCCGCCGGTTGTTGAAATCGAAGAAGAGTCGGTGAAAGAGGTTCTCTCCGAAACCCCAATTTTCAAACCCCAAATCCCCAAAATAACCCCAGAGAAAGACACCCATTCGCCTCCGAAGCTCCAACCAGAGCAGCCGCCCAAAGAGCTTGCCGTCGACATCGCCGTCCCCGCCGAGCCTTCCCAGGCTTCGGAGCCTTGTGGGGTCACCCTCAGCGAGAGCTTCTCATATTCGACGGCAACCACCGCCACCACCATAACTGACGCCAGAGACGACGAGGTTACGAGTAAGCAGAAGAGAGATGCGGGTCCCAGAGTGCATGGCGCTTCTTCAACGGCGGCGCGTAGTAAGCGTCCTTACTCCGGCGACGTCGCCGCGCGGAGGGAAAGAGCAGCCAGACCTCTGGCGAGGGCATCGGAGCCTTCGATGGGGAAGAGGAATCGAACTGAAACGAGTTCGTTTCGCGGGAGGGAATCGGGTCAGCTGAGTACCTTGCAGCAGCGCAGTGGTGGCCCCACTGGAGTGAGGCGCGATACGGTGTCGTCCAGGTCGAGGTCACCGGCTACCCGGACGGCCGGTGGAGTGGGTCGAGGGGGCAGGGGAAGAAGCCCGTCGGCGTCTAAGGTGACTGGACCAGCTGGTGGCAGTTCCTCGCAGCTGGGAGTGGGAGGAGTTGAGAAACAAGGCAAAACTAAAAAGGAGGAGGAACCAAACGGCGCCGTCGTGCAGCAAGGGAATGAGGGTAAAACAAGAAAGGAGGAGGAACCAAACGGCGAGGTTTCGCAGCTGGGGAATGAAGGTAAAACTAGAAAGGAGGACGAATCACACGGTGGCGTTGCGCAGCAGGGGAATGAGTCCTCCATCGACAACCCTCTGGTTTCATTAGAGTGCTTCATCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

357

Amino Acids

37.72

Weight (kDa)

9.24

Isoelectric Point (pI)

63.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AatII GACGTC 1 cut(s) 537
Acc16I TGCGCA 1 cut(s) 1005
AccB1I GGYRCC 2 cut(s) 17, 881
AccB7I CCANNNNNTGG 1 cut(s) 806
AccI GTMKAC 1 cut(s) 321
AccII CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 2 cut(s) 167, 738
AcyI GRCGYC 4 cut(s) 429, 534, 782, 882
AdeI CACNNNGTG 1 cut(s) 995
AfaI GTAC 1 cut(s) 655
AfiI CCNNNNNNNGG 6 cut(s) 355, 527, 546, 593, 717, 806
AgsI TTSAA 3 cut(s) 182, 232, 498
AjnI CCWGG 2 cut(s) 348, 710
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 7 cut(s) 286, 313, 387, 649, 803, 823, 952
AluI AGCT 7 cut(s) 286, 313, 387, 649, 803, 823, 952
Alw26I GTCTC 2 cut(s) 17, 429
AlwI GGATC 1 cut(s) 87
AoxI GGCC 4 cut(s) 64, 167, 676, 738
ApeKI GCWGC 9 cut(s) 149, 298, 557, 661, 664, 820, 892, 949, 1006
AspLEI GCGC 7 cut(s) 491, 508, 544, 669, 696, 884, 1006
AspS9I GGNCC 4 cut(s) 65, 473, 677, 797
AsuC2I CCSGG 1 cut(s) 733
AsuHPI GGTGA 4 cut(s) 211, 364, 714, 802
AvaII GGWCC 2 cut(s) 473, 797
BanI GGYRCC 2 cut(s) 17, 881
BbvCI CCTCAGC 1 cut(s) 377
BbvI GCAGC 9 cut(s) 136, 310, 569, 673, 676, 832, 904, 961, 1018
BccI CCATC 2 cut(s) 586, 1034
BceAI ACGGC 9 cut(s) 182, 302, 314, 417, 516, 753, 869, 895, 952
BciT130I CCWGG 2 cut(s) 350, 712
BciVI GTATCC 1 cut(s) 134
BcnI CCSGG 1 cut(s) 733
BcoDI GTCTC 2 cut(s) 17, 429
BfaI CTAG 1 cut(s) 972
BfoI RGCGCY 2 cut(s) 492, 885
BfuI GTATCC 1 cut(s) 134
Bme1390I CCNGG 3 cut(s) 350, 712, 733
Bme18I GGWCC 2 cut(s) 473, 797
BmgT120I GGNCC 4 cut(s) 65, 473, 677, 797
BmrFI CCNGG 3 cut(s) 350, 712, 733
BmsI GCATC 2 cut(s) 457, 587
BplI GAGNNNNNCTC 4 cut(s) 197, 229, 374, 406
BpmI CTGGAG 2 cut(s) 98, 705
Bpu10I CCTNAGC 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 733
BsaHI GRCGYC 4 cut(s) 429, 534, 782, 882
BsaJI CCNNGG 1 cut(s) 348
Bsc4I CCNNNNNNNGG 6 cut(s) 355, 527, 546, 593, 717, 806
Bse118I RCCGGY 3 cut(s) 172, 724, 740
Bse1I ACTGG 2 cut(s) 688, 799
BseBI CCWGG 2 cut(s) 350, 712
BseDI CCNNGG 1 cut(s) 348
BseLI CCNNNNNNNGG 6 cut(s) 355, 527, 546, 593, 717, 806
BseMII CTCAG 3 cut(s) 154, 391, 641
BseNI ACTGG 2 cut(s) 688, 799
BseRI GAGGAG 3 cut(s) 849, 881, 938
BseX3I CGGCCG 2 cut(s) 167, 738
BseXI GCAGC 9 cut(s) 136, 310, 569, 673, 676, 832, 904, 961, 1018
BseYI CCCAGC 2 cut(s) 823, 952
BsgI GTGCAG 2 cut(s) 135, 911
Bsh1236I CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
Bsh1285I CGRYCG 2 cut(s) 170, 741
BshFI GGCC 4 cut(s) 66, 169, 678, 740
BshNI GGYRCC 2 cut(s) 17, 881
BsiEI CGRYCG 2 cut(s) 170, 741
BsiSI CCGG 5 cut(s) 173, 528, 725, 733, 741
BslFI GGGAC 2 cut(s) 317, 459
BslI CCNNNNNNNGG 6 cut(s) 355, 527, 546, 593, 717, 806
BsmAI GTCTC 2 cut(s) 17, 429
BsmBI CGTCTC 1 cut(s) 429
BsmFI GGGAC 2 cut(s) 317, 459
BsnI GGCC 4 cut(s) 66, 169, 678, 740
Bsp143I GATC 1 cut(s) 92
BspANI GGCC 4 cut(s) 66, 169, 678, 740
BspCNI CTCAG 3 cut(s) 153, 390, 642
BspFNI CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
BspPI GGATC 1 cut(s) 87
BspT107I GGYRCC 2 cut(s) 17, 881
BsrFI RCCGGY 3 cut(s) 172, 724, 740
BsrI ACTGG 2 cut(s) 688, 799
BssAI RCCGGY 3 cut(s) 172, 724, 740
BssECI CCNNGG 1 cut(s) 348
BssMI GATC 1 cut(s) 92
BssNI GRCGYC 4 cut(s) 429, 534, 782, 882
Bst2UI CCWGG 2 cut(s) 350, 712
Bst4CI ACNGT 2 cut(s) 703, 995
Bst6I CTCTTC 3 cut(s) 186, 455, 593
BstACI GRCGYC 4 cut(s) 429, 534, 782, 882
BstC8I GCNNGC 1 cut(s) 315
BstDEI CTNAG 4 cut(s) 140, 377, 650, 786
BstEII GGTNACC 2 cut(s) 370, 720
BstFNI CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
BstH2I RGCGCY 2 cut(s) 492, 885
BstHHI GCGC 7 cut(s) 491, 508, 544, 669, 696, 884, 1006
BstKTI GATC 1 cut(s) 95
BstMAI GTCTC 2 cut(s) 17, 429
BstMBI GATC 1 cut(s) 92
BstMCI CGRYCG 2 cut(s) 170, 741
BstMWI GCNNNNNNNGC 6 cut(s) 283, 310, 335, 410, 514, 675
BstNI CCWGG 2 cut(s) 350, 712
BstPI GGTNACC 2 cut(s) 370, 720
BstSCI CCNGG 3 cut(s) 348, 710, 731
BstUI CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
BstV1I GCAGC 9 cut(s) 136, 310, 569, 673, 676, 832, 904, 961, 1018
BstX2I RGATCY 1 cut(s) 92
BstXI CCANNNNNNTGG 1 cut(s) 568
BstYI RGATCY 1 cut(s) 92
BstZI CGGCCG 2 cut(s) 167, 738
BsuI GTATCC 1 cut(s) 134
BsuRI GGCC 4 cut(s) 66, 169, 678, 740
BtgZI GCGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 2 cut(s) 676, 681
Cac8I GCNNGC 1 cut(s) 315
CfoI GCGC 7 cut(s) 491, 508, 544, 669, 696, 884, 1006
Cfr10I RCCGGY 3 cut(s) 172, 724, 740
Cfr13I GGNCC 4 cut(s) 65, 473, 677, 797
CseI GACGC 3 cut(s) 437, 506, 771
Csp6I GTAC 1 cut(s) 654
CviAII CATG 1 cut(s) 485
CviQI GTAC 1 cut(s) 654
DdeI CTNAG 4 cut(s) 140, 377, 650, 786
DinI GGCGCC 1 cut(s) 883
DpnI GATC 1 cut(s) 94
DpnII GATC 1 cut(s) 92
DraIII CACNNNGTG 1 cut(s) 995
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 167, 738
EagI CGGCCG 2 cut(s) 167, 738
Eam1104I CTCTTC 3 cut(s) 186, 455, 593
EarI CTCTTC 3 cut(s) 186, 455, 593
EclXI CGGCCG 2 cut(s) 167, 738
Eco47I GGWCC 2 cut(s) 473, 797
Eco52I CGGCCG 2 cut(s) 167, 738
Eco91I GGTNACC 2 cut(s) 370, 720
EcoO109I RGGNCCY 1 cut(s) 473
EcoO65I GGTNACC 2 cut(s) 370, 720
EcoRII CCWGG 2 cut(s) 348, 710
EgeI GGCGCC 1 cut(s) 883
EheI GGCGCC 1 cut(s) 883
Esp3I CGTCTC 1 cut(s) 429
FaeI CATG 1 cut(s) 488
FaiI YATR 3 cut(s) 394, 422, 486
FaqI GGGAC 2 cut(s) 317, 459
FatI CATG 1 cut(s) 484
FauI CCCGC 3 cut(s) 343, 463, 623
FblI GTMKAC 1 cut(s) 321
FspBI CTAG 1 cut(s) 972
FspI TGCGCA 1 cut(s) 1005
GlaI GCGC 7 cut(s) 490, 507, 543, 668, 695, 883, 1005
GsaI CCCAGC 2 cut(s) 827, 956
GsuI CTGGAG 2 cut(s) 98, 705
HaeII RGCGCY 2 cut(s) 492, 885
HaeIII GGCC 4 cut(s) 66, 169, 678, 740
HapII CCGG 5 cut(s) 173, 528, 725, 733, 741
HgaI GACGC 3 cut(s) 437, 506, 771
HhaI GCGC 7 cut(s) 491, 508, 544, 669, 696, 884, 1006
Hin1I GRCGYC 4 cut(s) 429, 534, 782, 882
Hin1II CATG 1 cut(s) 488
Hin6I GCGC 7 cut(s) 489, 506, 542, 667, 694, 882, 1004
HinP1I GCGC 7 cut(s) 489, 506, 542, 667, 694, 882, 1004
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 5 cut(s) 194, 604, 638, 986, 1019
HpaII CCGG 5 cut(s) 173, 528, 725, 733, 741
HphI GGTGA 4 cut(s) 211, 364, 714, 802
Hpy166II GTNNAC 1 cut(s) 322
Hpy188I TCNGA 5 cut(s) 143, 217, 282, 358, 583
Hpy188III TCNNGA 1 cut(s) 115
Hpy8I GTNNAC 1 cut(s) 322
Hpy99I CGWCG 7 cut(s) 323, 403, 443, 536, 539, 781, 890
HpyAV CCTTC 3 cut(s) 354, 597, 956
HpyCH4III ACNGT 2 cut(s) 703, 995
HpyCH4IV ACGT 1 cut(s) 534
HpyCH4V TGCA 4 cut(s) 152, 484, 661, 892
HpyF10VI GCNNNNNNNGC 6 cut(s) 283, 310, 335, 410, 514, 675
HpyF3I CTNAG 4 cut(s) 140, 377, 650, 786
HpySE526I ACGT 1 cut(s) 534
Hsp92I GRCGYC 4 cut(s) 429, 534, 782, 882
Hsp92II CATG 1 cut(s) 488
HspAI GCGC 7 cut(s) 489, 506, 542, 667, 694, 882, 1004
KasI GGCGCC 1 cut(s) 881
KflI GGGWCCC 1 cut(s) 473
Kzo9I GATC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 291, 358, 583
Lsp1109I GCAGC 9 cut(s) 136, 310, 569, 673, 676, 832, 904, 961, 1018
LweI GCATC 2 cut(s) 457, 587
MaeI CTAG 1 cut(s) 972
MaeII ACGT 1 cut(s) 534
MaeIII GTNAC 4 cut(s) 370, 445, 720, 790
MalI GATC 1 cut(s) 94
MboI GATC 1 cut(s) 92
MboII GAAGA 6 cut(s) 200, 203, 472, 486, 610, 780
MflI RGATCY 1 cut(s) 92
MluCI AATT 1 cut(s) 225
Mly113I GGCGCC 1 cut(s) 882
MlyI GAGTC 2 cut(s) 203, 1028
MmeI TCCRAC 1 cut(s) 313
MslI CAYNNNNRTG 2 cut(s) 686, 1051
MspA1I CMGCKG 5 cut(s) 149, 649, 803, 823, 952
MspI CCGG 5 cut(s) 173, 528, 725, 733, 741
MspR9I CCNGG 3 cut(s) 350, 712, 733
MvaI CCWGG 2 cut(s) 350, 712
MvnI CGCG 6 cut(s) 104, 508, 542, 544, 630, 696
MwoI GCNNNNNNNGC 6 cut(s) 283, 310, 335, 410, 514, 675
NarI GGCGCC 1 cut(s) 882
NciI CCSGG 1 cut(s) 733
NdeII GATC 1 cut(s) 92
NlaIII CATG 1 cut(s) 488
NmeAIII GCCGAG 1 cut(s) 364
NmuCI GTSAC 3 cut(s) 370, 720, 790
NsbI TGCGCA 1 cut(s) 1005
OliI CACNNNNGTG 1 cut(s) 686
PcsI WCGNNNNNNNCGW 5 cut(s) 327, 435, 587, 713, 885
PfeI GAWTC 3 cut(s) 604, 638, 986
PflMI CCANNNNNTGG 1 cut(s) 806
PleI GAGTC 2 cut(s) 202, 1027
PluTI GGCGCC 1 cut(s) 885
PpsI GAGTC 2 cut(s) 202, 1027
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
Psp6I CCWGG 2 cut(s) 348, 710
PspEI GGTNACC 2 cut(s) 370, 720
PspFI CCCAGC 2 cut(s) 823, 952
PspGI CCWGG 2 cut(s) 348, 710
PspPI GGNCC 4 cut(s) 65, 473, 677, 797
PspPPI RGGWCCY 1 cut(s) 473
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 4 cut(s) 649, 803, 823, 952
RsaI GTAC 1 cut(s) 655
RsaNI GTAC 1 cut(s) 654
RseI CAYNNNNRTG 2 cut(s) 686, 1051
SalI GTCGAC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 92
Sau96I GGNCC 4 cut(s) 65, 473, 677, 797
SchI GAGTC 2 cut(s) 203, 1028
ScrFI CCNGG 3 cut(s) 350, 712, 733
SfaNI GCATC 2 cut(s) 457, 587
SfoI GGCGCC 1 cut(s) 883
SinI GGWCC 2 cut(s) 473, 797
SmiMI CAYNNNNRTG 2 cut(s) 686, 1051
Sse9I AATT 1 cut(s) 225
SspDI GGCGCC 1 cut(s) 881
SspMI CTAG 1 cut(s) 972
StyD4I CCNGG 3 cut(s) 348, 710, 731
TaaI ACNGT 2 cut(s) 703, 995
TaiI ACGT 1 cut(s) 537
TaqI TCGA 8 cut(s) 186, 321, 398, 590, 607, 716, 754, 1029
TasI AATT 1 cut(s) 225
TauI GCSGC 5 cut(s) 149, 172, 304, 506, 542
TfiI GAWTC 3 cut(s) 604, 638, 986
TscAI CASTG 2 cut(s) 676, 688
TseFI GTSAC 3 cut(s) 370, 720, 790
TseI GCWGC 9 cut(s) 149, 298, 557, 661, 664, 820, 892, 949, 1006
Tsp45I GTSAC 3 cut(s) 370, 720, 790
TspDTI ATGAA 3 cut(s) 975, 1035, 1048
TspRI CASTG 2 cut(s) 676, 688
Van91I CCANNNNNTGG 1 cut(s) 806
VpaK11BI GGWCC 2 cut(s) 473, 797
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 1 cut(s) 972
ZraI GACGTC 1 cut(s) 535
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.