Prupe.3G233700_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0018466
Physical Location & Seq
Forward (+)
22962775 .. 22965346
2572 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G233700.1

Sequence Viewer

Length: 1044 bp
ATGGGTTGTTGTCTCGGCACCACCAAGACCCCAAACCAAGACCCTCACCACCACCCAAATGGCCCCAACAACAGCCACTTCCACCCTAAATCTTCGGTGACGGAACCCGACCCGACCCATATCCAGAAAACCCAACTAAGAGCCTCGACACCGCCGCCGCCTCCACCTCCTCCACCCGTTGTTGAAGAAGAGTCAGTGAAAGAGGTTCTCTCCGAAACCCCCATCTCCAAACCCCAAATCCCCAAAATATCCCAAGACCAAAACACCCATCTGCCTCCGAAATTCCAAGGAGAGCTTCCCGATTTTCCTCCGCAACCCCAAGCAGAACCCATCCATGTTCCTCCGAATCCCCAAGCAGAGCTCACCCATTTTCCTCCGAATCTCCAGGCAGAGCTCACCCATGTTCCTCCGAAACTCCAAGCAGAGCAGCCCAAGGAGCTCTCTGAGGAGCCTTCTCAGGCTTCAGACCTTTGTGGGGTTAGCGAGAGCTTCTCATTGTCAACAACCACCACCACAACCACCATTACAGACGCCAGAGAAGACGAAGCTACGAGCAAGCGGAAGAGAGACGTGGGTCACAGAGACAGGGCGAGTGGGCCTTCTTCAACGACGGCACGCTGCAAGCGTCCTTACTCCGGCGAACTCGCCGGCCGGAGAGAAAAAGGAGTCAATCTCCCTGCGAGGGCGCTGGAACCTCCAATGGGGAAGAGGAATCGGACTGAAACGAGGTCGTCTCGAGGGCGAGAATCGGGTCAGCTGAGGACCATGCAGCGTGGCGCGGGGCCCACCGGAGTCAGGCGTGATGCGGTGTCGTCCCGGTCGAGGTCACCAGCTACTCGGAAGGCTGGTCGGGCAGCTGTAGGAAGGAGCCCGGCGAAGGTGACTGGACGAGCCGCTGCCGGTGGCAGTTCATCGCAGCAGGGAGCAGTGGAGAGTGAGGGTAAACAAATTAAAAAGGAGGCGGACCCATCAAACGACGGCGTTTCGCAGCCCCAGAAGCAGGGGAATGAGTCCCTTGAGTTAGAATGCTTCATCTTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

348

Amino Acids

37.4

Weight (kDa)

9.08

Isoelectric Point (pI)

65.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 17
AccII CGCG 1 cut(s) 779
AciI CCGC 9 cut(s) 152, 155, 158, 311, 559, 779, 806, 894, 962
AcoI YGGCCR 1 cut(s) 649
AcsI RAATTY 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 447
AcyI GRCGYC 1 cut(s) 531
AfiI CCNNNNNNNGG 8 cut(s) 475, 635, 682, 701, 795, 822, 877, 1000
AgsI TTSAA 2 cut(s) 185, 606
AjiI CACGTC 1 cut(s) 571
AjnI CCWGG 1 cut(s) 384
AjuI GAANNNNNNNTTGG 2 cut(s) 279, 311
AluBI AGCT 9 cut(s) 295, 361, 394, 439, 489, 548, 757, 833, 857
AluI AGCT 9 cut(s) 295, 361, 394, 439, 489, 548, 757, 833, 857
Alw21I GWGCWC 3 cut(s) 363, 396, 441
Alw26I GTCTC 4 cut(s) 17, 561, 576, 738
Ama87I CYCGRG 1 cut(s) 735
AoxI GGCC 4 cut(s) 61, 596, 649, 782
ApaI GGGCCC 1 cut(s) 786
ApeKI GCWGC 7 cut(s) 427, 618, 769, 854, 896, 916, 988
ApoI RAATTY 1 cut(s) 281
AspLEI GCGC 2 cut(s) 688, 779
AspS9I GGNCC 6 cut(s) 62, 596, 762, 782, 783, 964
AsuC2I CCSGG 2 cut(s) 817, 872
AsuHPI GGTGA 6 cut(s) 38, 109, 355, 388, 819, 892
AvaI CYCGRG 1 cut(s) 735
AvaII GGWCC 2 cut(s) 762, 964
BaeGI GKGCMC 1 cut(s) 786
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 5 cut(s) 363, 396, 441, 786, 872
BbsI GAAGAC 1 cut(s) 546
Bbv12I GWGCWC 3 cut(s) 363, 396, 441
BbvCI CCTCAGC 1 cut(s) 758
BbvI GCAGC 7 cut(s) 439, 605, 781, 866, 883, 928, 1000
BccI CCATC 4 cut(s) 230, 276, 338, 976
BceAI ACGGC 2 cut(s) 627, 994
BciT130I CCWGG 1 cut(s) 386
BcnI CCSGG 2 cut(s) 817, 872
BcoDI GTCTC 4 cut(s) 17, 561, 576, 738
BfmI CTRYAG 1 cut(s) 858
BfoI RGCGCY 1 cut(s) 689
Bme1390I CCNGG 3 cut(s) 386, 817, 872
Bme18I GGWCC 2 cut(s) 762, 964
BmeT110I CYCGRG 1 cut(s) 735
BmgBI CACGTC 1 cut(s) 571
BmgT120I GGNCC 6 cut(s) 62, 596, 762, 782, 783, 964
BmiI GGNNCC 9 cut(s) 19, 64, 105, 450, 693, 783, 784, 869, 966
BmrFI CCNGG 3 cut(s) 386, 817, 872
BmsI GCATC 1 cut(s) 793
BoxI GACNNNNGTC 1 cut(s) 573
BpiI GAAGAC 1 cut(s) 546
BplI GAGNNNNNCTC 8 cut(s) 194, 226, 476, 508, 657, 689, 718, 750
BpmI CTGGAG 1 cut(s) 368
Bpu10I CCTNAGC 1 cut(s) 758
BpuEI CTTGAG 1 cut(s) 1037
BpuMI CCSGG 2 cut(s) 817, 872
BsaHI GRCGYC 1 cut(s) 531
BsaJI CCNNGG 2 cut(s) 286, 432
BsaWI WCCGGW 1 cut(s) 788
Bsc4I CCNNNNNNNGG 8 cut(s) 475, 635, 682, 701, 795, 822, 877, 1000
Bse118I RCCGGY 2 cut(s) 647, 899
Bse1I ACTGG 1 cut(s) 889
BseBI CCWGG 1 cut(s) 386
BseDI CCNNGG 2 cut(s) 286, 432
BseGI GGATG 1 cut(s) 330
BseLI CCNNNNNNNGG 8 cut(s) 475, 635, 682, 701, 795, 822, 877, 1000
BseMII CTCAG 3 cut(s) 435, 470, 749
BseNI ACTGG 1 cut(s) 889
BseRI GAGGAG 2 cut(s) 159, 461
BseSI GKGCMC 1 cut(s) 786
BseX3I CGGCCG 1 cut(s) 649
BseXI GCAGC 7 cut(s) 439, 605, 781, 866, 883, 928, 1000
Bsh1236I CGCG 1 cut(s) 779
Bsh1285I CGRYCG 2 cut(s) 652, 821
BshFI GGCC 4 cut(s) 63, 598, 651, 784
BshNI GGYRCC 1 cut(s) 17
BsiEI CGRYCG 2 cut(s) 652, 821
BsiHKAI GWGCWC 3 cut(s) 363, 396, 441
BsiHKCI CYCGRG 1 cut(s) 735
BsiSI CCGG 7 cut(s) 636, 648, 652, 789, 817, 872, 900
BslFI GGGAC 2 cut(s) 799, 997
BslI CCNNNNNNNGG 8 cut(s) 475, 635, 682, 701, 795, 822, 877, 1000
BsmAI GTCTC 4 cut(s) 17, 561, 576, 738
BsmBI CGTCTC 2 cut(s) 561, 738
BsmFI GGGAC 2 cut(s) 799, 997
BsmI GAATGC 1 cut(s) 1031
BsnI GGCC 4 cut(s) 63, 598, 651, 784
BsoBI CYCGRG 1 cut(s) 735
Bsp120I GGGCCC 1 cut(s) 782
Bsp1286I GDGCHC 5 cut(s) 363, 396, 441, 786, 872
BspACI CCGC 9 cut(s) 152, 155, 158, 311, 559, 779, 806, 894, 962
BspANI GGCC 4 cut(s) 63, 598, 651, 784
BspCNI CTCAG 3 cut(s) 436, 469, 750
BspFNI CGCG 1 cut(s) 779
BspLI GGNNCC 9 cut(s) 19, 64, 105, 450, 693, 783, 784, 869, 966
BspT107I GGYRCC 1 cut(s) 17
BsrFI RCCGGY 2 cut(s) 647, 899
BsrI ACTGG 1 cut(s) 889
BssAI RCCGGY 2 cut(s) 647, 899
BssECI CCNNGG 2 cut(s) 286, 432
BssNI GRCGYC 1 cut(s) 531
BssT1I CCWWGG 2 cut(s) 286, 432
Bst2UI CCWGG 1 cut(s) 386
Bst6I CTCTTC 3 cut(s) 183, 557, 701
BstACI GRCGYC 1 cut(s) 531
BstC8I GCNNGC 4 cut(s) 557, 616, 623, 649
BstDEI CTNAG 4 cut(s) 137, 444, 456, 758
BstEII GGTNACC 1 cut(s) 825
BstF5I GGATG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 779
BstH2I RGCGCY 1 cut(s) 689
BstHHI GCGC 2 cut(s) 688, 779
BstMAI GTCTC 4 cut(s) 17, 561, 576, 738
BstMCI CGRYCG 2 cut(s) 652, 821
BstMWI GCNNNNNNNGC 3 cut(s) 436, 851, 997
BstNI CCWGG 1 cut(s) 386
BstPAI GACNNNNGTC 1 cut(s) 573
BstPI GGTNACC 1 cut(s) 825
BstSCI CCNGG 3 cut(s) 384, 815, 870
BstSFI CTRYAG 1 cut(s) 858
BstSLI GKGCMC 1 cut(s) 786
BstUI CGCG 1 cut(s) 779
BstV1I GCAGC 7 cut(s) 439, 605, 781, 866, 883, 928, 1000
BstV2I GAAGAC 1 cut(s) 546
BstXI CCANNNNNNTGG 1 cut(s) 59
BstZI CGGCCG 1 cut(s) 649
BsuRI GGCC 4 cut(s) 63, 598, 651, 784
BtgZI GCGATG 1 cut(s) 897
BtrI CACGTC 1 cut(s) 571
BtsCI GGATG 1 cut(s) 330
BtsI GCAGTG 1 cut(s) 933
BtsIMutI CAGTG 2 cut(s) 201, 933
Cac8I GCNNGC 4 cut(s) 557, 616, 623, 649
CfoI GCGC 2 cut(s) 688, 779
Cfr10I RCCGGY 2 cut(s) 647, 899
Cfr13I GGNCC 6 cut(s) 62, 596, 762, 782, 783, 964
CseI GACGC 2 cut(s) 539, 614
CviAII CATG 3 cut(s) 335, 401, 766
DdeI CTNAG 4 cut(s) 137, 444, 456, 758
EaeI YGGCCR 1 cut(s) 649
EagI CGGCCG 1 cut(s) 649
Eam1104I CTCTTC 3 cut(s) 183, 557, 701
EarI CTCTTC 3 cut(s) 183, 557, 701
EciI GGCGGA 1 cut(s) 977
Ecl136II GAGCTC 3 cut(s) 361, 394, 439
EclXI CGGCCG 1 cut(s) 649
Eco130I CCWWGG 2 cut(s) 286, 432
Eco24I GRGCYC 5 cut(s) 363, 396, 441, 786, 872
Eco47I GGWCC 2 cut(s) 762, 964
Eco52I CGGCCG 1 cut(s) 649
Eco53kI GAGCTC 3 cut(s) 361, 394, 439
Eco57I CTGAAG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 735
Eco91I GGTNACC 1 cut(s) 825
EcoICRI GAGCTC 3 cut(s) 361, 394, 439
EcoO109I RGGNCCY 1 cut(s) 782
EcoO65I GGTNACC 1 cut(s) 825
EcoRII CCWGG 1 cut(s) 384
EcoT14I CCWWGG 2 cut(s) 286, 432
EcoT38I GRGCYC 5 cut(s) 363, 396, 441, 786, 872
ErhI CCWWGG 2 cut(s) 286, 432
Esp3I CGTCTC 2 cut(s) 561, 738
FaeI CATG 3 cut(s) 338, 404, 769
FaiI YATR 4 cut(s) 120, 336, 402, 767
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 799, 997
FatI CATG 3 cut(s) 334, 400, 765
FauI CCCGC 1 cut(s) 772
FokI GGATG 1 cut(s) 317
FriOI GRGCYC 5 cut(s) 363, 396, 441, 786, 872
GlaI GCGC 2 cut(s) 687, 778
GsuI CTGGAG 1 cut(s) 368
HaeII RGCGCY 1 cut(s) 689
HaeIII GGCC 4 cut(s) 63, 598, 651, 784
HapII CCGG 7 cut(s) 636, 648, 652, 789, 817, 872, 900
HgaI GACGC 2 cut(s) 539, 614
HhaI GCGC 2 cut(s) 688, 779
Hin1I GRCGYC 1 cut(s) 531
Hin1II CATG 3 cut(s) 338, 404, 769
Hin6I GCGC 2 cut(s) 686, 777
HinP1I GCGC 2 cut(s) 686, 777
HincII GTYRAC 1 cut(s) 501
HindII GTYRAC 1 cut(s) 501
HinfI GANTC 8 cut(s) 191, 346, 379, 666, 712, 746, 792, 1010
HpaII CCGG 7 cut(s) 636, 648, 652, 789, 817, 872, 900
HphI GGTGA 6 cut(s) 38, 109, 355, 388, 819, 892
Hpy166II GTNNAC 2 cut(s) 501, 944
Hpy188I TCNGA 9 cut(s) 214, 279, 345, 378, 411, 445, 466, 717, 840
Hpy188III TCNNGA 3 cut(s) 124, 299, 735
Hpy8I GTNNAC 2 cut(s) 501, 944
Hpy99I CGWCG 2 cut(s) 613, 980
HpyAV CCTTC 5 cut(s) 462, 609, 835, 858, 871
HpyCH4IV ACGT 1 cut(s) 570
HpyCH4V TGCA 2 cut(s) 621, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 436, 851, 997
HpyF3I CTNAG 4 cut(s) 137, 444, 456, 758
HpySE526I ACGT 1 cut(s) 570
Hsp92I GRCGYC 1 cut(s) 531
Hsp92II CATG 3 cut(s) 338, 404, 769
HspAI GCGC 2 cut(s) 686, 777
KroI GCCGGC 1 cut(s) 647
KroNI GCCGGC 1 cut(s) 649
LmnI GCTCC 4 cut(s) 436, 448, 867, 923
Lsp1109I GCAGC 7 cut(s) 439, 605, 781, 866, 883, 928, 1000
LweI GCATC 1 cut(s) 793
MaeII ACGT 1 cut(s) 570
MaeIII GTNAC 4 cut(s) 97, 575, 825, 880
MboII GAAGA 7 cut(s) 84, 197, 200, 551, 574, 594, 718
MhlI GDGCHC 5 cut(s) 363, 396, 441, 786, 872
MluCI AATT 2 cut(s) 281, 948
MlyI GAGTC 4 cut(s) 200, 675, 801, 1019
MroNI GCCGGC 1 cut(s) 647
MseI TTAA 1 cut(s) 951
MslI CAYNNNNRTG 1 cut(s) 57
MspA1I CMGCKG 3 cut(s) 757, 857, 896
MspI CCGG 7 cut(s) 636, 648, 652, 789, 817, 872, 900
MspR9I CCNGG 3 cut(s) 386, 817, 872
Mva1269I GAATGC 1 cut(s) 1031
MvaI CCWGG 1 cut(s) 386
MvnI CGCG 1 cut(s) 779
MwoI GCNNNNNNNGC 3 cut(s) 436, 851, 997
NaeI GCCGGC 1 cut(s) 649
NciI CCSGG 2 cut(s) 817, 872
NgoMIV GCCGGC 1 cut(s) 647
NlaIII CATG 3 cut(s) 338, 404, 769
NlaIV GGNNCC 9 cut(s) 19, 64, 105, 450, 693, 783, 784, 869, 966
NmuCI GTSAC 4 cut(s) 97, 575, 825, 880
PaeR7I CTCGAG 1 cut(s) 735
PcsI WCGNNNNNNNCGW 2 cut(s) 622, 818
PctI GAATGC 1 cut(s) 1031
PdiI GCCGGC 1 cut(s) 649
PfeI GAWTC 4 cut(s) 346, 379, 712, 746
PleI GAGTC 4 cut(s) 199, 674, 800, 1018
PpsI GAGTC 4 cut(s) 199, 674, 800, 1018
PshAI GACNNNNGTC 1 cut(s) 573
Psp124BI GAGCTC 3 cut(s) 363, 396, 441
Psp6I CCWGG 1 cut(s) 384
PspEI GGTNACC 1 cut(s) 825
PspGI CCWGG 1 cut(s) 384
PspN4I GGNNCC 9 cut(s) 19, 64, 105, 450, 693, 783, 784, 869, 966
PspOMI GGGCCC 1 cut(s) 782
PspPI GGNCC 6 cut(s) 62, 596, 762, 782, 783, 964
PvuII CAGCTG 2 cut(s) 757, 857
RseI CAYNNNNRTG 1 cut(s) 57
SacI GAGCTC 3 cut(s) 363, 396, 441
SaqAI TTAA 1 cut(s) 951
Sau96I GGNCC 6 cut(s) 62, 596, 762, 782, 783, 964
SchI GAGTC 4 cut(s) 200, 675, 801, 1019
ScrFI CCNGG 3 cut(s) 386, 817, 872
SduI GDGCHC 5 cut(s) 363, 396, 441, 786, 872
SfaNI GCATC 1 cut(s) 793
SfcI CTRYAG 1 cut(s) 858
Sfr274I CTCGAG 1 cut(s) 735
SinI GGWCC 2 cut(s) 762, 964
SlaI CTCGAG 1 cut(s) 735
SmiMI CAYNNNNRTG 1 cut(s) 57
SmlI CTYRAG 2 cut(s) 735, 1016
SmoI CTYRAG 2 cut(s) 735, 1016
Sse9I AATT 2 cut(s) 281, 948
SsiI CCGC 9 cut(s) 152, 155, 158, 311, 559, 779, 806, 894, 962
SstI GAGCTC 3 cut(s) 363, 396, 441
StyD4I CCNGG 3 cut(s) 384, 815, 870
StyI CCWWGG 2 cut(s) 286, 432
TaiI ACGT 1 cut(s) 573
TaqI TCGA 3 cut(s) 146, 736, 821
TasI AATT 2 cut(s) 281, 948
TauI GCSGC 3 cut(s) 157, 160, 896
TfiI GAWTC 4 cut(s) 346, 379, 712, 746
Tru1I TTAA 1 cut(s) 951
Tru9I TTAA 1 cut(s) 951
TscAI CASTG 2 cut(s) 201, 933
TseFI GTSAC 4 cut(s) 97, 575, 825, 880
TseI GCWGC 7 cut(s) 427, 618, 769, 854, 896, 916, 988
Tsp45I GTSAC 4 cut(s) 97, 575, 825, 880
TspDTI ATGAA 2 cut(s) 900, 1021
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 2 cut(s) 201, 933
VpaK11BI GGWCC 2 cut(s) 762, 964
XapI RAATTY 1 cut(s) 281
XcmI CCANNNNNNNNNTGG 1 cut(s) 56
XhoI CTCGAG 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.