Rw2G046520

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0018466
Physical Location & Seq
Forward (+)
73743689 .. 73744688
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G046520.1

Sequence Viewer

Length: 927 bp
ATGGGTTGCTGTTTGGGCACCGCCAGGACCCCAAAACCAAAACCCAACTCTCTGACCCAAGCCCATGTCGAAAAACCCGAAACCAGATCCCCACCACCACCGCTGGTTGTGGAAGAAGAAACTGTGAAAGAGGTCCTTTCCGAAACCCCAATTTTCAAGCCACAAAACCCAGAAATTCCGCCAGAGAAAAACACCCTTTCGCCTCCGAAAGAAGAACCAAATTTGGCGGAAGAAGAAGCCAAATTGCAAGCTGAGCCGACGCCCAAAGAGGCGGCGGTTTCCGAGGCGTCTCAGCTTTCAGAGCCGTGTGGGATCAGCGAGAGCTACTCGTACTCAACGACTACCACCACCACTACTATTGCAGATGCCAGAGAAGACGAAGCTACCAGTAATCGGAAGCGGGAATTGGGCCCCAGAGCAAATGGGTCTTCTGGGCCGGTGGTGCGGCGGAAGCGTCCTTACTCCGGCGAGGTTGCTAGCCAGAGAGAGAAAGGGCCCAAGCCGCCGCGGAGGACGCCGGAGCCGGCGGCTGGGAAGAGGAACCGGACGGAGACGACGTCGTTCCGGGGACGGGAATCGGGTCAGCTGAGGACCATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCCAGGTCGAGGTCACCGGCTACCCGGAATGCGGGTGGAGTGAATCGAGCGGGTAGAGGAAAGAGCCCCGCCAAGGTGACCGGACGAGCCGGTGGCAGTTCTTCCTCGGTGGGTGTAGAGGAGAGTGAGAAGAAGGGTAACAACGAGCCTAAAGAGGAAGTGTTGGCCGGAAAAAAGGAGCCTGAAGAGGAGCAACGAAACGACGGCGTTTCGCAGCCGCAGCAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCGTTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

308

Amino Acids

33.2

Weight (kDa)

8.96

Isoelectric Point (pI)

66.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 560
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 695
AccII CGCG 1 cut(s) 508
AclWI GGATC 2 cut(s) 81, 320
AcoI YGGCCR 1 cut(s) 810
AcsI RAATTY 2 cut(s) 174, 220
AcuI CTGAAG 1 cut(s) 849
AcyI GRCGYC 4 cut(s) 260, 287, 515, 557
AfaI GTAC 1 cut(s) 332
AfiI CCNNNNNNNGG 9 cut(s) 393, 464, 530, 571, 600, 654, 676, 718, 869
AgsI TTSAA 1 cut(s) 157
AjnI CCWGG 2 cut(s) 23, 647
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AluBI AGCT 5 cut(s) 251, 295, 324, 383, 586
AluI AGCT 5 cut(s) 251, 295, 324, 383, 586
Alw26I GTCTC 2 cut(s) 294, 545
AlwI GGATC 2 cut(s) 81, 320
AoxI GGCC 4 cut(s) 409, 434, 494, 810
ApaI GGGCCC 2 cut(s) 413, 498
ApeKI GCWGC 3 cut(s) 598, 859, 865
ApoI RAATTY 2 cut(s) 174, 220
AspS9I GGNCC 8 cut(s) 27, 133, 409, 410, 434, 494, 495, 591
AsuC2I CCSGG 2 cut(s) 566, 670
AsuHPI GGTGA 2 cut(s) 651, 733
AsuNHI GCTAGC 1 cut(s) 476
AvaII GGWCC 3 cut(s) 27, 133, 591
BaeGI GKGCMC 3 cut(s) 20, 413, 498
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 413, 498, 713
BarI GAAGNNNNNNTAC 2 cut(s) 443, 475
BbsI GAAGAC 2 cut(s) 381, 420
BbvCI CCTCAGC 1 cut(s) 587
BbvI GCAGC 3 cut(s) 610, 871, 877
BceAI ACGGC 2 cut(s) 289, 865
BciT130I CCWGG 2 cut(s) 25, 649
BcnI CCSGG 2 cut(s) 566, 670
BcoDI GTCTC 2 cut(s) 294, 545
BfaI CTAG 2 cut(s) 477, 925
BisI GCNGC 9 cut(s) 273, 446, 503, 506, 528, 599, 860, 863, 866
BlpI GCTNAGC 1 cut(s) 252
BlsI GCNGC 9 cut(s) 274, 447, 504, 507, 529, 600, 861, 864, 867
Bme1390I CCNGG 4 cut(s) 25, 566, 649, 670
Bme18I GGWCC 3 cut(s) 27, 133, 591
BmgT120I GGNCC 8 cut(s) 27, 133, 409, 410, 434, 494, 495, 591
BmiI GGNNCC 9 cut(s) 19, 29, 411, 412, 496, 522, 542, 615, 825
BmrFI CCNGG 4 cut(s) 25, 566, 649, 670
BmsI GCATC 1 cut(s) 355
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 2 cut(s) 381, 420
BplI GAGNNNNNCTC 2 cut(s) 311, 343
BpmI CTGGAG 1 cut(s) 642
Bpu10I CCTNAGC 1 cut(s) 587
Bpu1102I GCTNAGC 1 cut(s) 252
BpuMI CCSGG 2 cut(s) 566, 670
BsaHI GRCGYC 4 cut(s) 260, 287, 515, 557
BsaJI CCNNGG 5 cut(s) 282, 506, 565, 717, 750
BsaWI WCCGGW 2 cut(s) 543, 725
BsaXI ACNNNNNCTCC 2 cut(s) 542, 572
Bsc4I CCNNNNNNNGG 9 cut(s) 393, 464, 530, 571, 600, 654, 676, 718, 869
Bse118I RCCGGY 4 cut(s) 436, 523, 661, 734
Bse1I ACTGG 2 cut(s) 387, 625
BseBI CCWGG 2 cut(s) 25, 649
BseDI CCNNGG 5 cut(s) 282, 506, 565, 717, 750
BseLI CCNNNNNNNGG 9 cut(s) 393, 464, 530, 571, 600, 654, 676, 718, 869
BseMII CTCAG 3 cut(s) 243, 305, 578
BseNI ACTGG 2 cut(s) 387, 625
BseRI GAGGAG 2 cut(s) 779, 848
BseSI GKGCMC 3 cut(s) 20, 413, 498
BseXI GCAGC 3 cut(s) 610, 871, 877
BseYI CCCAGC 1 cut(s) 530
Bsh1236I CGCG 1 cut(s) 508
BshFI GGCC 4 cut(s) 411, 436, 496, 812
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 2 cut(s) 582, 865
BslI CCNNNNNNNGG 9 cut(s) 393, 464, 530, 571, 600, 654, 676, 718, 869
BsmAI GTCTC 2 cut(s) 294, 545
BsmBI CGTCTC 2 cut(s) 294, 545
BsmFI GGGAC 2 cut(s) 582, 865
BsmI GAATGC 1 cut(s) 679
BsnI GGCC 4 cut(s) 411, 436, 496, 812
Bsp120I GGGCCC 2 cut(s) 409, 494
Bsp1286I GDGCHC 4 cut(s) 20, 413, 498, 713
Bsp143I GATC 2 cut(s) 86, 312
Bsp1720I GCTNAGC 1 cut(s) 252
BspANI GGCC 4 cut(s) 411, 436, 496, 812
BspCNI CTCAG 3 cut(s) 244, 304, 579
BspFNI CGCG 1 cut(s) 508
BspLI GGNNCC 9 cut(s) 19, 29, 411, 412, 496, 522, 542, 615, 825
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 2 cut(s) 81, 320
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 695
BsrFI RCCGGY 4 cut(s) 436, 523, 661, 734
BsrI ACTGG 2 cut(s) 387, 625
BssAI RCCGGY 4 cut(s) 436, 523, 661, 734
BssECI CCNNGG 5 cut(s) 282, 506, 565, 717, 750
BssMI GATC 2 cut(s) 86, 312
BssNI GRCGYC 4 cut(s) 260, 287, 515, 557
BssT1I CCWWGG 1 cut(s) 717
Bst2UI CCWGG 2 cut(s) 25, 649
Bst4CI ACNGT 2 cut(s) 124, 640
Bst6I CTCTTC 2 cut(s) 530, 825
BstACI GRCGYC 4 cut(s) 260, 287, 515, 557
BstC8I GCNNGC 3 cut(s) 249, 478, 525
BstDEI CTNAG 3 cut(s) 252, 291, 587
BstDSI CCRYGG 1 cut(s) 506
BstEII GGTNACC 2 cut(s) 657, 721
BstFNI CGCG 1 cut(s) 508
BstKTI GATC 2 cut(s) 89, 315
BstMAI GTCTC 2 cut(s) 294, 545
BstMBI GATC 2 cut(s) 86, 312
BstMWI GCNNNNNNNGC 8 cut(s) 15, 253, 301, 442, 451, 502, 514, 865
BstNI CCWGG 2 cut(s) 25, 649
BstPI GGTNACC 2 cut(s) 657, 721
BstSCI CCNGG 4 cut(s) 23, 564, 647, 668
BstSLI GKGCMC 3 cut(s) 20, 413, 498
BstUI CGCG 1 cut(s) 508
BstV1I GCAGC 3 cut(s) 610, 871, 877
BstV2I GAAGAC 2 cut(s) 381, 420
BstX2I RGATCY 1 cut(s) 86
BstYI RGATCY 1 cut(s) 86
BsuRI GGCC 4 cut(s) 411, 436, 496, 812
BtgI CCRYGG 1 cut(s) 506
Cac8I GCNNGC 3 cut(s) 249, 478, 525
Cfr10I RCCGGY 4 cut(s) 436, 523, 661, 734
Cfr13I GGNCC 8 cut(s) 27, 133, 409, 410, 434, 494, 495, 591
Cfr42I CCGCGG 1 cut(s) 509
CseI GACGC 4 cut(s) 268, 276, 443, 523
Csp6I GTAC 1 cut(s) 331
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 2 cut(s) 65, 595
CviQI GTAC 1 cut(s) 331
DdeI CTNAG 3 cut(s) 252, 291, 587
DpnI GATC 2 cut(s) 88, 314
DpnII GATC 2 cut(s) 86, 312
EaeI YGGCCR 1 cut(s) 810
Eam1104I CTCTTC 2 cut(s) 530, 825
EarI CTCTTC 2 cut(s) 530, 825
EciI GGCGGA 3 cut(s) 168, 242, 463
Eco130I CCWWGG 1 cut(s) 717
Eco24I GRGCYC 3 cut(s) 413, 498, 713
Eco47I GGWCC 3 cut(s) 27, 133, 591
Eco57I CTGAAG 1 cut(s) 849
Eco91I GGTNACC 2 cut(s) 657, 721
EcoO109I RGGNCCY 4 cut(s) 27, 133, 410, 494
EcoO65I GGTNACC 2 cut(s) 657, 721
EcoRII CCWGG 2 cut(s) 23, 647
EcoT14I CCWWGG 1 cut(s) 717
EcoT38I GRGCYC 3 cut(s) 413, 498, 713
ErhI CCWWGG 1 cut(s) 717
Esp3I CGTCTC 2 cut(s) 294, 545
FaeI CATG 2 cut(s) 68, 598
FaiI YATR 2 cut(s) 66, 596
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FaqI GGGAC 2 cut(s) 582, 865
FatI CATG 2 cut(s) 64, 594
FauI CCCGC 4 cut(s) 393, 670, 688, 721
Fnu4HI GCNGC 9 cut(s) 273, 446, 503, 506, 528, 599, 860, 863, 866
FriOI GRGCYC 3 cut(s) 413, 498, 713
Fsp4HI GCNGC 9 cut(s) 273, 446, 503, 506, 528, 599, 860, 863, 866
FspBI CTAG 2 cut(s) 477, 925
GluI GCNGC 9 cut(s) 273, 446, 503, 506, 528, 599, 860, 863, 866
GsaI CCCAGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 642
HaeIII GGCC 4 cut(s) 411, 436, 496, 812
HgaI GACGC 4 cut(s) 268, 276, 443, 523
Hin1I GRCGYC 4 cut(s) 260, 287, 515, 557
Hin1II CATG 2 cut(s) 68, 598
HinfI GANTC 3 cut(s) 575, 688, 878
HphI GGTGA 2 cut(s) 651, 733
Hpy188I TCNGA 6 cut(s) 54, 142, 207, 283, 301, 396
Hpy99I CGWCG 4 cut(s) 262, 559, 562, 851
HpyAV CCTTC 2 cut(s) 772, 868
HpyCH4III ACNGT 2 cut(s) 124, 640
HpyCH4IV ACGT 1 cut(s) 557
HpyCH4V TGCA 3 cut(s) 247, 362, 598
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 253, 301, 442, 451, 502, 514, 865
HpyF3I CTNAG 3 cut(s) 252, 291, 587
HpySE526I ACGT 1 cut(s) 557
Hsp92I GRCGYC 4 cut(s) 260, 287, 515, 557
Hsp92II CATG 2 cut(s) 68, 598
KroI GCCGGC 1 cut(s) 523
KroNI GCCGGC 1 cut(s) 525
KspI CCGCGG 1 cut(s) 509
Kzo9I GATC 2 cut(s) 86, 312
LmnI GCTCC 3 cut(s) 520, 823, 835
Lsp1109I GCAGC 3 cut(s) 610, 871, 877
LweI GCATC 1 cut(s) 355
MaeI CTAG 2 cut(s) 477, 925
MaeII ACGT 1 cut(s) 557
MaeIII GTNAC 3 cut(s) 657, 721, 782
MalI GATC 2 cut(s) 88, 314
MbiI CCGCTC 1 cut(s) 695
MboI GATC 2 cut(s) 86, 312
MflI RGATCY 1 cut(s) 86
MhlI GDGCHC 4 cut(s) 20, 413, 498, 713
MluCI AATT 5 cut(s) 150, 174, 220, 242, 404
MlyI GAGTC 1 cut(s) 887
MroNI GCCGGC 1 cut(s) 523
MspA1I CMGCKG 4 cut(s) 103, 508, 586, 601
MspR9I CCNGG 4 cut(s) 25, 566, 649, 670
Mva1269I GAATGC 1 cut(s) 679
MvaI CCWGG 2 cut(s) 25, 649
MvnI CGCG 1 cut(s) 508
MwoI GCNNNNNNNGC 8 cut(s) 15, 253, 301, 442, 451, 502, 514, 865
NaeI GCCGGC 1 cut(s) 525
NciI CCSGG 2 cut(s) 566, 670
NdeII GATC 2 cut(s) 86, 312
NgoMIV GCCGGC 1 cut(s) 523
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 2 cut(s) 68, 598
NlaIV GGNNCC 9 cut(s) 19, 29, 411, 412, 496, 522, 542, 615, 825
NmuCI GTSAC 2 cut(s) 657, 721
PcsI WCGNNNNNNNCGW 4 cut(s) 75, 335, 554, 650
PctI GAATGC 1 cut(s) 679
PdiI GCCGGC 1 cut(s) 525
PfeI GAWTC 2 cut(s) 575, 688
PflFI GACNNNGTC 1 cut(s) 556
PkrI GCNGC 9 cut(s) 274, 447, 504, 507, 529, 600, 861, 864, 867
PleI GAGTC 1 cut(s) 886
PpsI GAGTC 1 cut(s) 886
PpuMI RGGWCCY 2 cut(s) 27, 133
Psp5II RGGWCCY 2 cut(s) 27, 133
Psp6I CCWGG 2 cut(s) 23, 647
PspEI GGTNACC 2 cut(s) 657, 721
PspFI CCCAGC 1 cut(s) 530
PspGI CCWGG 2 cut(s) 23, 647
PspN4I GGNNCC 9 cut(s) 19, 29, 411, 412, 496, 522, 542, 615, 825
PspOMI GGGCCC 2 cut(s) 409, 494
PspPI GGNCC 8 cut(s) 27, 133, 409, 410, 434, 494, 495, 591
PspPPI RGGWCCY 2 cut(s) 27, 133
PsuI RGATCY 1 cut(s) 86
PsyI GACNNNGTC 1 cut(s) 556
PvuII CAGCTG 1 cut(s) 586
RsaI GTAC 1 cut(s) 332
RsaNI GTAC 1 cut(s) 331
SacII CCGCGG 1 cut(s) 509
SatI GCNGC 9 cut(s) 273, 446, 503, 506, 528, 599, 860, 863, 866
Sau3AI GATC 2 cut(s) 86, 312
Sau96I GGNCC 8 cut(s) 27, 133, 409, 410, 434, 494, 495, 591
SchI GAGTC 1 cut(s) 887
ScrFI CCNGG 4 cut(s) 25, 566, 649, 670
SduI GDGCHC 4 cut(s) 20, 413, 498, 713
SfaNI GCATC 1 cut(s) 355
Sfr303I CCGCGG 1 cut(s) 509
SgrBI CCGCGG 1 cut(s) 509
SinI GGWCC 3 cut(s) 27, 133, 591
Sse9I AATT 5 cut(s) 150, 174, 220, 242, 404
SspMI CTAG 2 cut(s) 477, 925
StyD4I CCNGG 4 cut(s) 23, 564, 647, 668
StyI CCWWGG 1 cut(s) 717
TaaI ACNGT 2 cut(s) 124, 640
TaiI ACGT 1 cut(s) 560
TaqI TCGA 3 cut(s) 69, 653, 691
TasI AATT 5 cut(s) 150, 174, 220, 242, 404
TauI GCSGC 6 cut(s) 275, 448, 505, 508, 530, 865
TfiI GAWTC 2 cut(s) 575, 688
TseFI GTSAC 2 cut(s) 657, 721
TseI GCWGC 3 cut(s) 598, 859, 865
Tsp45I GTSAC 2 cut(s) 657, 721
TspDTI ATGAA 1 cut(s) 904
TspGWI ACGGA 1 cut(s) 563
Tth111I GACNNNGTC 1 cut(s) 556
VpaK11BI GGWCC 3 cut(s) 27, 133, 591
XapI RAATTY 2 cut(s) 174, 220
XspI CTAG 2 cut(s) 477, 925
ZraI GACGTC 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.