Rh2CG545000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0018466
Physical Location & Seq
Forward (+)
72297063 .. 72298061
999 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG545000.1

Sequence Viewer

Length: 999 bp
ATGGGTTGCTGTTTGGGCACCGCCAGGACCCCAAAACCAGTCCCACCACACCCCAACCCCAACCCCCCCCGCCGCCACCACCACCACCACCATTCCCACTACCACGCCAAGAAACCCAACTCTCTGACCCAAGCCCATGTTGAAAAACCCGAAACCAGATCCCCACCACCACCGCTGGTTGTGGAAGAAGAAACTGTGAAAGAGGTCCTTTCCGAAACCCCAATTTTCAAGCCACAAAACCCAGAAATTCCGCCAGAGAAAAACACCCTTTCGCCTCCGAAAGAAGAACCAAATTTGGCGGAAGAAGAACCCAAATTGCAAGCTGAGCCGCCGCCCAAAGAGGCGGCGGTTTCCGAGGCTTCTCAGCTTTCAGAGCCGTGTGGGATCAGCGAGAGCTACTCGTACTCAACGACTACCACCACCACTACTATTGCAGATGCCAGAGAAGACGAAGCTACCAGTAATCGGAAGCGGGAATTGGGCCCCAGAGCAAATGGGTCTTCTGGGCCGGTGGTGCGGCGGAAGCGTCCTTACTCCGGCGAGGTTGCTAGCCAGAGAGAGAAAGGGCCCAAGCCGCCGCGCAGGACGCCGGAGCCGGCGGCTGGGAAAAGGAACCGGACGGAGACGACGTCGTTCCGGGGACGGGAATCGGGTCAGCTGAGGACCATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCCAGGTCGAGGTCACCGGCTACCCGGAATGCGGGTGGAGTGAATCGAGCGGGTAGAGGAAAGAGCCCCGCCAAGGTGACCGGACGAGCCGGTGGCAGTTCTTCCTCGGTGGGTGTAGAGGAGAGTGAGAAGAAGGGTAACAACGGGCCTAAAGAGGAAGTGTTGGCCGGAAAAAAGGAGCCTGAAGAGGAGCAACGAAACGACGGCGTTTCGCAGCCGCAGCAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCGTTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.06

Weight (kDa)

9.37

Isoelectric Point (pI)

68.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 632
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 767
AccII CGCG 1 cut(s) 580
AclWI GGATC 2 cut(s) 153, 392
AcoI YGGCCR 1 cut(s) 882
AcsI RAATTY 2 cut(s) 246, 292
AcuI CTGAAG 1 cut(s) 921
AcyI GRCGYC 2 cut(s) 587, 629
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 9 cut(s) 465, 536, 602, 643, 672, 726, 748, 790, 941
AgsI TTSAA 2 cut(s) 143, 229
AjnI CCWGG 2 cut(s) 23, 719
AjuI GAANNNNNNNTTGG 2 cut(s) 461, 493
AluBI AGCT 5 cut(s) 323, 367, 396, 455, 658
AluI AGCT 5 cut(s) 323, 367, 396, 455, 658
Alw26I GTCTC 1 cut(s) 617
AlwI GGATC 2 cut(s) 153, 392
AoxI GGCC 5 cut(s) 481, 506, 566, 863, 882
ApaI GGGCCC 2 cut(s) 485, 570
ApeKI GCWGC 3 cut(s) 670, 931, 937
ApoI RAATTY 2 cut(s) 246, 292
AspLEI GCGC 1 cut(s) 582
AspS9I GGNCC 9 cut(s) 27, 205, 481, 482, 506, 566, 567, 663, 863
AsuC2I CCSGG 2 cut(s) 638, 742
AsuHPI GGTGA 2 cut(s) 723, 805
AsuNHI GCTAGC 1 cut(s) 548
AvaII GGWCC 3 cut(s) 27, 205, 663
BaeGI GKGCMC 3 cut(s) 20, 485, 570
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 485, 570, 785
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BbsI GAAGAC 2 cut(s) 453, 492
BbvCI CCTCAGC 1 cut(s) 659
BbvI GCAGC 3 cut(s) 682, 943, 949
BceAI ACGGC 2 cut(s) 361, 937
BciT130I CCWGG 2 cut(s) 25, 721
BcnI CCSGG 2 cut(s) 638, 742
BcoDI GTCTC 1 cut(s) 617
BfaI CTAG 2 cut(s) 549, 997
BlpI GCTNAGC 1 cut(s) 324
Bme1390I CCNGG 4 cut(s) 25, 638, 721, 742
Bme18I GGWCC 3 cut(s) 27, 205, 663
BmgT120I GGNCC 9 cut(s) 27, 205, 481, 482, 506, 566, 567, 663, 863
BmiI GGNNCC 9 cut(s) 19, 29, 483, 484, 568, 594, 614, 687, 897
BmrFI CCNGG 4 cut(s) 25, 638, 721, 742
BmsI GCATC 1 cut(s) 427
BmtI GCTAGC 1 cut(s) 552
BpiI GAAGAC 2 cut(s) 453, 492
BplI GAGNNNNNCTC 2 cut(s) 383, 415
BpmI CTGGAG 1 cut(s) 714
Bpu10I CCTNAGC 1 cut(s) 659
Bpu1102I GCTNAGC 1 cut(s) 324
BpuMI CCSGG 2 cut(s) 638, 742
BsaHI GRCGYC 2 cut(s) 587, 629
BsaJI CCNNGG 4 cut(s) 354, 637, 789, 822
BsaWI WCCGGW 2 cut(s) 615, 797
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 9 cut(s) 465, 536, 602, 643, 672, 726, 748, 790, 941
Bse118I RCCGGY 4 cut(s) 508, 595, 733, 806
Bse1I ACTGG 3 cut(s) 38, 459, 697
BseBI CCWGG 2 cut(s) 25, 721
BseDI CCNNGG 4 cut(s) 354, 637, 789, 822
BseLI CCNNNNNNNGG 9 cut(s) 465, 536, 602, 643, 672, 726, 748, 790, 941
BseMII CTCAG 3 cut(s) 315, 377, 650
BseNI ACTGG 3 cut(s) 38, 459, 697
BseRI GAGGAG 2 cut(s) 851, 920
BseSI GKGCMC 3 cut(s) 20, 485, 570
BseXI GCAGC 3 cut(s) 682, 943, 949
BseYI CCCAGC 1 cut(s) 602
Bsh1236I CGCG 1 cut(s) 580
BshFI GGCC 5 cut(s) 483, 508, 568, 865, 884
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 3 cut(s) 26, 654, 937
BslI CCNNNNNNNGG 9 cut(s) 465, 536, 602, 643, 672, 726, 748, 790, 941
BsmAI GTCTC 1 cut(s) 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 3 cut(s) 26, 654, 937
BsmI GAATGC 1 cut(s) 751
BsnI GGCC 5 cut(s) 483, 508, 568, 865, 884
Bsp120I GGGCCC 2 cut(s) 481, 566
Bsp1286I GDGCHC 4 cut(s) 20, 485, 570, 785
Bsp143I GATC 2 cut(s) 158, 384
Bsp1720I GCTNAGC 1 cut(s) 324
BspANI GGCC 5 cut(s) 483, 508, 568, 865, 884
BspCNI CTCAG 3 cut(s) 316, 376, 651
BspFNI CGCG 1 cut(s) 580
BspLI GGNNCC 9 cut(s) 19, 29, 483, 484, 568, 594, 614, 687, 897
BspOI GCTAGC 1 cut(s) 552
BspPI GGATC 2 cut(s) 153, 392
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 767
BsrFI RCCGGY 4 cut(s) 508, 595, 733, 806
BsrI ACTGG 3 cut(s) 38, 459, 697
BssAI RCCGGY 4 cut(s) 508, 595, 733, 806
BssECI CCNNGG 4 cut(s) 354, 637, 789, 822
BssMI GATC 2 cut(s) 158, 384
BssNI GRCGYC 2 cut(s) 587, 629
BssT1I CCWWGG 1 cut(s) 789
Bst2UI CCWGG 2 cut(s) 25, 721
Bst4CI ACNGT 2 cut(s) 196, 712
Bst6I CTCTTC 1 cut(s) 897
BstACI GRCGYC 2 cut(s) 587, 629
BstC8I GCNNGC 3 cut(s) 321, 550, 597
BstDEI CTNAG 3 cut(s) 324, 363, 659
BstEII GGTNACC 2 cut(s) 729, 793
BstFNI CGCG 1 cut(s) 580
BstHHI GCGC 1 cut(s) 582
BstKTI GATC 2 cut(s) 161, 387
BstMAI GTCTC 1 cut(s) 617
BstMBI GATC 2 cut(s) 158, 384
BstMWI GCNNNNNNNGC 8 cut(s) 15, 325, 373, 514, 523, 574, 586, 937
BstNI CCWGG 2 cut(s) 25, 721
BstPI GGTNACC 2 cut(s) 729, 793
BstSCI CCNGG 4 cut(s) 23, 636, 719, 740
BstSLI GKGCMC 3 cut(s) 20, 485, 570
BstUI CGCG 1 cut(s) 580
BstV1I GCAGC 3 cut(s) 682, 943, 949
BstV2I GAAGAC 2 cut(s) 453, 492
BstX2I RGATCY 1 cut(s) 158
BstYI RGATCY 1 cut(s) 158
BsuRI GGCC 5 cut(s) 483, 508, 568, 865, 884
Cac8I GCNNGC 3 cut(s) 321, 550, 597
CfoI GCGC 1 cut(s) 582
Cfr10I RCCGGY 4 cut(s) 508, 595, 733, 806
Cfr13I GGNCC 9 cut(s) 27, 205, 481, 482, 506, 566, 567, 663, 863
CseI GACGC 2 cut(s) 515, 595
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 412, 447
CviAII CATG 2 cut(s) 137, 667
CviQI GTAC 1 cut(s) 403
DdeI CTNAG 3 cut(s) 324, 363, 659
DpnI GATC 2 cut(s) 160, 386
DpnII GATC 2 cut(s) 158, 384
EaeI YGGCCR 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 897
EarI CTCTTC 1 cut(s) 897
EciI GGCGGA 3 cut(s) 240, 314, 535
Eco130I CCWWGG 1 cut(s) 789
Eco24I GRGCYC 3 cut(s) 485, 570, 785
Eco47I GGWCC 3 cut(s) 27, 205, 663
Eco57I CTGAAG 1 cut(s) 921
Eco91I GGTNACC 2 cut(s) 729, 793
EcoO109I RGGNCCY 4 cut(s) 27, 205, 482, 566
EcoO65I GGTNACC 2 cut(s) 729, 793
EcoRII CCWGG 2 cut(s) 23, 719
EcoT14I CCWWGG 1 cut(s) 789
EcoT38I GRGCYC 3 cut(s) 485, 570, 785
ErhI CCWWGG 1 cut(s) 789
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 2 cut(s) 140, 670
FaiI YATR 2 cut(s) 138, 668
FalI AAGNNNNNCTT 2 cut(s) 192, 224
FaqI GGGAC 3 cut(s) 26, 654, 937
FatI CATG 2 cut(s) 136, 666
FauI CCCGC 5 cut(s) 77, 465, 742, 760, 793
FriOI GRGCYC 3 cut(s) 485, 570, 785
FspBI CTAG 2 cut(s) 549, 997
GlaI GCGC 1 cut(s) 581
GsaI CCCAGC 1 cut(s) 606
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 5 cut(s) 483, 508, 568, 865, 884
HgaI GACGC 2 cut(s) 515, 595
HhaI GCGC 1 cut(s) 582
Hin1I GRCGYC 2 cut(s) 587, 629
Hin1II CATG 2 cut(s) 140, 670
Hin6I GCGC 1 cut(s) 580
HinP1I GCGC 1 cut(s) 580
HinfI GANTC 3 cut(s) 647, 760, 950
HphI GGTGA 2 cut(s) 723, 805
Hpy188I TCNGA 6 cut(s) 126, 214, 279, 355, 373, 468
Hpy99I CGWCG 3 cut(s) 631, 634, 923
HpyAV CCTTC 2 cut(s) 844, 940
HpyCH4III ACNGT 2 cut(s) 196, 712
HpyCH4IV ACGT 1 cut(s) 629
HpyCH4V TGCA 3 cut(s) 319, 434, 670
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 325, 373, 514, 523, 574, 586, 937
HpyF3I CTNAG 3 cut(s) 324, 363, 659
HpySE526I ACGT 1 cut(s) 629
Hsp92I GRCGYC 2 cut(s) 587, 629
Hsp92II CATG 2 cut(s) 140, 670
HspAI GCGC 1 cut(s) 580
KroI GCCGGC 1 cut(s) 595
KroNI GCCGGC 1 cut(s) 597
Kzo9I GATC 2 cut(s) 158, 384
LmnI GCTCC 3 cut(s) 592, 895, 907
Lsp1109I GCAGC 3 cut(s) 682, 943, 949
LweI GCATC 1 cut(s) 427
MaeI CTAG 2 cut(s) 549, 997
MaeII ACGT 1 cut(s) 629
MaeIII GTNAC 3 cut(s) 729, 793, 854
MalI GATC 2 cut(s) 160, 386
MbiI CCGCTC 1 cut(s) 767
MboI GATC 2 cut(s) 158, 384
MflI RGATCY 1 cut(s) 158
MhlI GDGCHC 4 cut(s) 20, 485, 570, 785
MluCI AATT 5 cut(s) 222, 246, 292, 314, 476
MlyI GAGTC 1 cut(s) 959
MroNI GCCGGC 1 cut(s) 595
MspA1I CMGCKG 3 cut(s) 175, 658, 673
MspR9I CCNGG 4 cut(s) 25, 638, 721, 742
Mva1269I GAATGC 1 cut(s) 751
MvaI CCWGG 2 cut(s) 25, 721
MvnI CGCG 1 cut(s) 580
MwoI GCNNNNNNNGC 8 cut(s) 15, 325, 373, 514, 523, 574, 586, 937
NaeI GCCGGC 1 cut(s) 597
NciI CCSGG 2 cut(s) 638, 742
NdeII GATC 2 cut(s) 158, 384
NgoMIV GCCGGC 1 cut(s) 595
NheI GCTAGC 1 cut(s) 548
NlaIII CATG 2 cut(s) 140, 670
NlaIV GGNNCC 9 cut(s) 19, 29, 483, 484, 568, 594, 614, 687, 897
NmuCI GTSAC 2 cut(s) 729, 793
PcsI WCGNNNNNNNCGW 3 cut(s) 407, 626, 722
PctI GAATGC 1 cut(s) 751
PdiI GCCGGC 1 cut(s) 597
PfeI GAWTC 2 cut(s) 647, 760
PflFI GACNNNGTC 1 cut(s) 628
PleI GAGTC 1 cut(s) 958
PpsI GAGTC 1 cut(s) 958
PpuMI RGGWCCY 2 cut(s) 27, 205
Psp5II RGGWCCY 2 cut(s) 27, 205
Psp6I CCWGG 2 cut(s) 23, 719
PspEI GGTNACC 2 cut(s) 729, 793
PspFI CCCAGC 1 cut(s) 602
PspGI CCWGG 2 cut(s) 23, 719
PspN4I GGNNCC 9 cut(s) 19, 29, 483, 484, 568, 594, 614, 687, 897
PspOMI GGGCCC 2 cut(s) 481, 566
PspPI GGNCC 9 cut(s) 27, 205, 481, 482, 506, 566, 567, 663, 863
PspPPI RGGWCCY 2 cut(s) 27, 205
PsuI RGATCY 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 628
PvuII CAGCTG 1 cut(s) 658
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
Sau3AI GATC 2 cut(s) 158, 384
Sau96I GGNCC 9 cut(s) 27, 205, 481, 482, 506, 566, 567, 663, 863
SchI GAGTC 1 cut(s) 959
ScrFI CCNGG 4 cut(s) 25, 638, 721, 742
SduI GDGCHC 4 cut(s) 20, 485, 570, 785
SfaNI GCATC 1 cut(s) 427
SinI GGWCC 3 cut(s) 27, 205, 663
Sse9I AATT 5 cut(s) 222, 246, 292, 314, 476
SspMI CTAG 2 cut(s) 549, 997
StyD4I CCNGG 4 cut(s) 23, 636, 719, 740
StyI CCWWGG 1 cut(s) 789
TaaI ACNGT 2 cut(s) 196, 712
TaiI ACGT 1 cut(s) 632
TaqI TCGA 2 cut(s) 725, 763
TasI AATT 5 cut(s) 222, 246, 292, 314, 476
TauI GCSGC 9 cut(s) 75, 331, 334, 347, 520, 577, 580, 602, 937
TfiI GAWTC 2 cut(s) 647, 760
TseFI GTSAC 2 cut(s) 729, 793
TseI GCWGC 3 cut(s) 670, 931, 937
Tsp45I GTSAC 2 cut(s) 729, 793
TspDTI ATGAA 1 cut(s) 976
TspGWI ACGGA 1 cut(s) 635
Tth111I GACNNNGTC 1 cut(s) 628
VpaK11BI GGWCC 3 cut(s) 27, 205, 663
XapI RAATTY 2 cut(s) 246, 292
XspI CTAG 2 cut(s) 549, 997
ZraI GACGTC 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.