RLG00000021328

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018466
Physical Location & Seq
Forward (+)
74183891 .. 74184886
996 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021328

Sequence Viewer

Length: 996 bp
ATGGGTTGCTGTTTGGGCACCGCCAGGACCCCAAAACCAGTCCCACCACACCCCAACAATGGCCCCAACCCCCGCCACCACCACCACCACCCCCACTACCACGCCAAGAAACCCAACTCTCTGACCCAAACCCATGTCGAAAAACCCGAAACCAGATCCCCACCACCACCGCTGGTTGTGGAAGAAGAAACTGTGAAAGAGGTCCTTTCCGAAACCCCAATTTTCAAGCCACAAAACCCAGAAATTCCGCCAGAGAAAAACACCCTTTCGCCTCCGAAAGAAGAACCAAATTTGGAGGAAGAAGAACCCAAATTGCAAGCTGAGCCGCCGCCCACAGAGGCGGCGGTTTCCGAGGCTTCTCAGCTTTCAGAGCCGTGTGGGATCAGCGAGAGCTACTCGTACTCAACCACTACCACCACCACTACTATTGCAGATGCCAGAGAAGACGAAGCTACCAGTAATCGGAAGCGGGAATTGGGCCCCAGAGCAAATGGGTCTTCTGGGCCGGTGGTGCGGCGGAAGCGTCCTTACTCCGGCGAGGTTGCTAGCCAGAGAGAGAGAGGGCACAAGCCGCCGCGGAGGACGCCGGAGCCGGCGGCTGGGAAGAGGAACCGGACGGAGACGACGTCGTTCCGGGGACGGGAATCGGGTCAGCTGAGGACCATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCCAGGTCAAGGTCACCGGCTACCCGGAATGCGGGTGGAGTGAATCGAGCGGGTAGAGGAAAGAGCCCCGCGAAGGTGACCGGACGAGCCGGTGGCGGTTCTTCCTCGGTGGGTGTAGAGGAGAGTGAGAAGAAGGGTAACAAAGAGCCTAAAGAGGAAGCGTTGGCCGGAAAAAAGGAGCCTGAAGAGGAGCAACGAAATGACGGCGTTTCGCAGCCGCAGCAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCGTTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.01

Weight (kDa)

9.08

Isoelectric Point (pI)

70.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 629
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 764
AccII CGCG 2 cut(s) 577, 785
AclWI GGATC 2 cut(s) 150, 389
AcoI YGGCCR 1 cut(s) 879
AcsI RAATTY 2 cut(s) 243, 289
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 2 cut(s) 584, 626
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 1 cut(s) 226
AjnI CCWGG 2 cut(s) 23, 716
AjuI GAANNNNNNNTTGG 2 cut(s) 458, 490
AluBI AGCT 5 cut(s) 320, 364, 393, 452, 655
AluI AGCT 5 cut(s) 320, 364, 393, 452, 655
Alw26I GTCTC 1 cut(s) 614
AlwI GGATC 2 cut(s) 150, 389
AoxI GGCC 4 cut(s) 61, 478, 503, 879
ApaI GGGCCC 1 cut(s) 482
ApeKI GCWGC 3 cut(s) 667, 928, 934
ApoI RAATTY 2 cut(s) 243, 289
AspS9I GGNCC 7 cut(s) 27, 62, 202, 478, 479, 503, 660
AsuC2I CCSGG 2 cut(s) 635, 739
AsuHPI GGTGA 2 cut(s) 720, 802
AsuNHI GCTAGC 1 cut(s) 545
AvaII GGWCC 3 cut(s) 27, 202, 660
BaeGI GKGCMC 3 cut(s) 20, 482, 567
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 2 cut(s) 482, 782
BarI GAAGNNNNNNTAC 2 cut(s) 512, 544
BbsI GAAGAC 2 cut(s) 450, 489
BbvCI CCTCAGC 1 cut(s) 656
BbvI GCAGC 3 cut(s) 679, 940, 946
BceAI ACGGC 2 cut(s) 358, 934
BciT130I CCWGG 2 cut(s) 25, 718
BcnI CCSGG 2 cut(s) 635, 739
BcoDI GTCTC 1 cut(s) 614
BfaI CTAG 2 cut(s) 546, 994
BlpI GCTNAGC 1 cut(s) 321
Bme1390I CCNGG 4 cut(s) 25, 635, 718, 739
Bme18I GGWCC 3 cut(s) 27, 202, 660
BmgT120I GGNCC 7 cut(s) 27, 62, 202, 478, 479, 503, 660
BmiI GGNNCC 9 cut(s) 19, 29, 64, 480, 481, 591, 611, 684, 894
BmrFI CCNGG 4 cut(s) 25, 635, 718, 739
BmsI GCATC 1 cut(s) 424
BmtI GCTAGC 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 450, 489
BplI GAGNNNNNCTC 2 cut(s) 380, 412
BpmI CTGGAG 1 cut(s) 711
Bpu10I CCTNAGC 1 cut(s) 656
Bpu1102I GCTNAGC 1 cut(s) 321
BpuMI CCSGG 2 cut(s) 635, 739
BsaHI GRCGYC 2 cut(s) 584, 626
BsaJI CCNNGG 4 cut(s) 351, 575, 634, 819
BsaWI WCCGGW 2 cut(s) 612, 794
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bse118I RCCGGY 4 cut(s) 505, 592, 730, 803
Bse1I ACTGG 3 cut(s) 38, 456, 694
BseBI CCWGG 2 cut(s) 25, 718
BseDI CCNNGG 4 cut(s) 351, 575, 634, 819
BseMII CTCAG 3 cut(s) 312, 374, 647
BseNI ACTGG 3 cut(s) 38, 456, 694
BseRI GAGGAG 2 cut(s) 848, 917
BseSI GKGCMC 3 cut(s) 20, 482, 567
BseXI GCAGC 3 cut(s) 679, 940, 946
BseYI CCCAGC 1 cut(s) 599
Bsh1236I CGCG 2 cut(s) 577, 785
BshFI GGCC 4 cut(s) 63, 480, 505, 881
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 3 cut(s) 26, 651, 934
BsmAI GTCTC 1 cut(s) 614
BsmBI CGTCTC 1 cut(s) 614
BsmFI GGGAC 3 cut(s) 26, 651, 934
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 4 cut(s) 63, 480, 505, 881
Bsp120I GGGCCC 1 cut(s) 478
Bsp1286I GDGCHC 4 cut(s) 20, 482, 567, 782
Bsp143I GATC 2 cut(s) 155, 381
Bsp1720I GCTNAGC 1 cut(s) 321
BspANI GGCC 4 cut(s) 63, 480, 505, 881
BspCNI CTCAG 3 cut(s) 313, 373, 648
BspFNI CGCG 2 cut(s) 577, 785
BspLI GGNNCC 9 cut(s) 19, 29, 64, 480, 481, 591, 611, 684, 894
BspOI GCTAGC 1 cut(s) 549
BspPI GGATC 2 cut(s) 150, 389
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 764
BsrFI RCCGGY 4 cut(s) 505, 592, 730, 803
BsrI ACTGG 3 cut(s) 38, 456, 694
BssAI RCCGGY 4 cut(s) 505, 592, 730, 803
BssECI CCNNGG 4 cut(s) 351, 575, 634, 819
BssMI GATC 2 cut(s) 155, 381
BssNI GRCGYC 2 cut(s) 584, 626
Bst2UI CCWGG 2 cut(s) 25, 718
Bst4CI ACNGT 2 cut(s) 193, 709
Bst6I CTCTTC 2 cut(s) 599, 894
BstACI GRCGYC 2 cut(s) 584, 626
BstC8I GCNNGC 3 cut(s) 318, 547, 594
BstDEI CTNAG 3 cut(s) 321, 360, 656
BstDSI CCRYGG 1 cut(s) 575
BstEII GGTNACC 2 cut(s) 726, 790
BstFNI CGCG 2 cut(s) 577, 785
BstKTI GATC 2 cut(s) 158, 384
BstMAI GTCTC 1 cut(s) 614
BstMBI GATC 2 cut(s) 155, 381
BstMWI GCNNNNNNNGC 8 cut(s) 15, 322, 370, 511, 520, 571, 583, 934
BstNI CCWGG 2 cut(s) 25, 718
BstPI GGTNACC 2 cut(s) 726, 790
BstSCI CCNGG 4 cut(s) 23, 633, 716, 737
BstSLI GKGCMC 3 cut(s) 20, 482, 567
BstUI CGCG 2 cut(s) 577, 785
BstV1I GCAGC 3 cut(s) 679, 940, 946
BstV2I GAAGAC 2 cut(s) 450, 489
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BsuRI GGCC 4 cut(s) 63, 480, 505, 881
BtgI CCRYGG 1 cut(s) 575
Cac8I GCNNGC 3 cut(s) 318, 547, 594
Cfr10I RCCGGY 4 cut(s) 505, 592, 730, 803
Cfr13I GGNCC 7 cut(s) 27, 62, 202, 478, 479, 503, 660
Cfr42I CCGCGG 1 cut(s) 578
CseI GACGC 2 cut(s) 512, 592
Csp6I GTAC 1 cut(s) 400
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 2 cut(s) 134, 664
CviQI GTAC 1 cut(s) 400
DdeI CTNAG 3 cut(s) 321, 360, 656
DpnI GATC 2 cut(s) 157, 383
DpnII GATC 2 cut(s) 155, 381
EaeI YGGCCR 1 cut(s) 879
Eam1104I CTCTTC 2 cut(s) 599, 894
EarI CTCTTC 2 cut(s) 599, 894
EciI GGCGGA 2 cut(s) 237, 532
Eco24I GRGCYC 2 cut(s) 482, 782
Eco47I GGWCC 3 cut(s) 27, 202, 660
Eco57I CTGAAG 1 cut(s) 918
Eco91I GGTNACC 2 cut(s) 726, 790
EcoO109I RGGNCCY 3 cut(s) 27, 202, 479
EcoO65I GGTNACC 2 cut(s) 726, 790
EcoRII CCWGG 2 cut(s) 23, 716
EcoT38I GRGCYC 2 cut(s) 482, 782
Esp3I CGTCTC 1 cut(s) 614
FaeI CATG 2 cut(s) 137, 667
FaiI YATR 2 cut(s) 135, 665
FalI AAGNNNNNCTT 2 cut(s) 189, 221
FaqI GGGAC 3 cut(s) 26, 651, 934
FatI CATG 2 cut(s) 133, 663
FauI CCCGC 5 cut(s) 80, 462, 739, 757, 790
FriOI GRGCYC 2 cut(s) 482, 782
FspBI CTAG 2 cut(s) 546, 994
GsaI CCCAGC 1 cut(s) 603
GsuI CTGGAG 1 cut(s) 711
HaeIII GGCC 4 cut(s) 63, 480, 505, 881
HgaI GACGC 2 cut(s) 512, 592
Hin1I GRCGYC 2 cut(s) 584, 626
Hin1II CATG 2 cut(s) 137, 667
HinfI GANTC 3 cut(s) 644, 757, 947
HphI GGTGA 2 cut(s) 720, 802
Hpy188I TCNGA 6 cut(s) 123, 211, 276, 352, 370, 465
Hpy99I CGWCG 2 cut(s) 628, 631
HpyAV CCTTC 3 cut(s) 781, 841, 937
HpyCH4III ACNGT 2 cut(s) 193, 709
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 3 cut(s) 316, 431, 667
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 322, 370, 511, 520, 571, 583, 934
HpyF3I CTNAG 3 cut(s) 321, 360, 656
HpySE526I ACGT 1 cut(s) 626
Hsp92I GRCGYC 2 cut(s) 584, 626
Hsp92II CATG 2 cut(s) 137, 667
KroI GCCGGC 1 cut(s) 592
KroNI GCCGGC 1 cut(s) 594
KspI CCGCGG 1 cut(s) 578
Kzo9I GATC 2 cut(s) 155, 381
LmnI GCTCC 3 cut(s) 589, 892, 904
Lsp1109I GCAGC 3 cut(s) 679, 940, 946
LweI GCATC 1 cut(s) 424
MaeI CTAG 2 cut(s) 546, 994
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 3 cut(s) 726, 790, 851
MalI GATC 2 cut(s) 157, 383
MbiI CCGCTC 1 cut(s) 764
MboI GATC 2 cut(s) 155, 381
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 4 cut(s) 20, 482, 567, 782
MluCI AATT 5 cut(s) 219, 243, 289, 311, 473
MlyI GAGTC 1 cut(s) 956
MroNI GCCGGC 1 cut(s) 592
MspA1I CMGCKG 4 cut(s) 172, 577, 655, 670
MspR9I CCNGG 4 cut(s) 25, 635, 718, 739
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 2 cut(s) 25, 718
MvnI CGCG 2 cut(s) 577, 785
MwoI GCNNNNNNNGC 8 cut(s) 15, 322, 370, 511, 520, 571, 583, 934
NaeI GCCGGC 1 cut(s) 594
NciI CCSGG 2 cut(s) 635, 739
NdeII GATC 2 cut(s) 155, 381
NgoMIV GCCGGC 1 cut(s) 592
NheI GCTAGC 1 cut(s) 545
NlaIII CATG 2 cut(s) 137, 667
NlaIV GGNNCC 9 cut(s) 19, 29, 64, 480, 481, 591, 611, 684, 894
NmuCI GTSAC 2 cut(s) 726, 790
PcsI WCGNNNNNNNCGW 2 cut(s) 144, 623
PctI GAATGC 1 cut(s) 748
PdiI GCCGGC 1 cut(s) 594
PfeI GAWTC 2 cut(s) 644, 757
PflFI GACNNNGTC 1 cut(s) 625
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
PpuMI RGGWCCY 2 cut(s) 27, 202
Psp5II RGGWCCY 2 cut(s) 27, 202
Psp6I CCWGG 2 cut(s) 23, 716
PspEI GGTNACC 2 cut(s) 726, 790
PspFI CCCAGC 1 cut(s) 599
PspGI CCWGG 2 cut(s) 23, 716
PspN4I GGNNCC 9 cut(s) 19, 29, 64, 480, 481, 591, 611, 684, 894
PspOMI GGGCCC 1 cut(s) 478
PspPI GGNCC 7 cut(s) 27, 62, 202, 478, 479, 503, 660
PspPPI RGGWCCY 2 cut(s) 27, 202
PsuI RGATCY 1 cut(s) 155
PsyI GACNNNGTC 1 cut(s) 625
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SacII CCGCGG 1 cut(s) 578
Sau3AI GATC 2 cut(s) 155, 381
Sau96I GGNCC 7 cut(s) 27, 62, 202, 478, 479, 503, 660
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 4 cut(s) 25, 635, 718, 739
SduI GDGCHC 4 cut(s) 20, 482, 567, 782
SfaNI GCATC 1 cut(s) 424
Sfr303I CCGCGG 1 cut(s) 578
SgrBI CCGCGG 1 cut(s) 578
SinI GGWCC 3 cut(s) 27, 202, 660
Sse9I AATT 5 cut(s) 219, 243, 289, 311, 473
SspMI CTAG 2 cut(s) 546, 994
StyD4I CCNGG 4 cut(s) 23, 633, 716, 737
TaaI ACNGT 2 cut(s) 193, 709
TaiI ACGT 1 cut(s) 629
TaqI TCGA 2 cut(s) 138, 760
TasI AATT 5 cut(s) 219, 243, 289, 311, 473
TauI GCSGC 8 cut(s) 328, 331, 344, 517, 574, 577, 599, 934
TfiI GAWTC 2 cut(s) 644, 757
TseFI GTSAC 2 cut(s) 726, 790
TseI GCWGC 3 cut(s) 667, 928, 934
Tsp45I GTSAC 2 cut(s) 726, 790
TspDTI ATGAA 1 cut(s) 973
TspGWI ACGGA 1 cut(s) 632
Tth111I GACNNNGTC 1 cut(s) 625
VpaK11BI GGWCC 3 cut(s) 27, 202, 660
XapI RAATTY 2 cut(s) 243, 289
XspI CTAG 2 cut(s) 546, 994
ZraI GACGTC 1 cut(s) 627
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.