Rh2AG561700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0018466
Physical Location & Seq
Forward (+)
79141835 .. 79142824
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG561700.1

Sequence Viewer

Length: 990 bp
ATGGGTTGCTGTTTGGGCACCGCCAGGACCCCAAAACCAGTCCCACCACACCCCAACCCCCCCCGCCACCGCCACCACCACCATCCCCACTACCACGCCAAGAAACCCAACTCTCTGACCCAAGCCCATGTCGAAAAACCCGAAACCAGATCCCCACCACCACCGCTGGTTGTGGAAGAAGAAACTGTGAAAGAGGTCCTTTCCGAAACCCCAATTTTCAAGCCACAAAACCCAGAAATTCCGCCAGAGAAAAACACCCTTTCGCCTCCGAAAGAAGAACCAAATTTGGCGGAAGAAGAACCCAAATTGCAAGCTGAGCCGCCGCCCAAAGAGGCGGCGGTTTCCGAGGCTTCTCAGCTTTCAGAGCCGTGTGGGATCAGCGAGAGCTACTCGTACTCAACGACGACGACCACCACTACTATTGCAGATGCCAGAGAAGACGAAGCTACCAGTAATCGGAAGCGGGAATTGGGCCCCAGAGCAAATGGGTCTTCTGGGCCGGTGGTGAGGCGGAAGCGTCCTTACTCCGGCGAGGTTGCTAGCCAGAGAGAGAGAGGGCCCAAGCCGCCGCGGAGGACGCCGGAGCCGGCGGCTGGGAAGAGGAACCGGACGGAGACGACGTCGTTCCGGGGACGGGAATCGGGTCAGCTGAGGACCATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCCAGGTCGAGGTCACCGGCTACCCGGAATGCGGGTGGAGTGAATCGAGCGGGTAGAGGAAAGAGCCCCGCGAAGGTGACCGGACGAGCCGGTGGCAGTTCTTTCTCGGTGGGTGTAGAGGAGAGTGAGAAGAACTGTAACAACGAGCCTAAAGAGGAAGTGTTGGCCGGAAAAAAGGAGCCTGAAGAGGAGCAACGAAACGACGGCGTTTCGCAGCCGCAGCAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCGTTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

329

Amino Acids

35.91

Weight (kDa)

9.14

Isoelectric Point (pI)

68.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 758
AccII CGCG 2 cut(s) 571, 779
AclWI GGATC 2 cut(s) 144, 383
AcoI YGGCCR 1 cut(s) 873
AcsI RAATTY 2 cut(s) 237, 283
AcuI CTGAAG 1 cut(s) 912
AcyI GRCGYC 2 cut(s) 578, 620
AfaI GTAC 1 cut(s) 395
AfiI CCNNNNNNNGG 9 cut(s) 456, 527, 593, 634, 663, 717, 739, 781, 932
AgsI TTSAA 1 cut(s) 220
AjnI CCWGG 2 cut(s) 23, 710
AjuI GAANNNNNNNTTGG 2 cut(s) 452, 484
AluBI AGCT 5 cut(s) 314, 358, 387, 446, 649
AluI AGCT 5 cut(s) 314, 358, 387, 446, 649
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 144, 383
AoxI GGCC 4 cut(s) 472, 497, 557, 873
ApaI GGGCCC 2 cut(s) 476, 561
ApeKI GCWGC 3 cut(s) 661, 922, 928
ApoI RAATTY 2 cut(s) 237, 283
AspS9I GGNCC 8 cut(s) 27, 196, 472, 473, 497, 557, 558, 654
AsuC2I CCSGG 2 cut(s) 629, 733
AsuHPI GGTGA 3 cut(s) 517, 714, 796
AsuNHI GCTAGC 1 cut(s) 539
AvaII GGWCC 3 cut(s) 27, 196, 654
BaeGI GKGCMC 3 cut(s) 20, 476, 561
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 476, 561, 776
BarI GAAGNNNNNNTAC 2 cut(s) 506, 538
BbsI GAAGAC 2 cut(s) 444, 483
BbvCI CCTCAGC 1 cut(s) 650
BbvI GCAGC 3 cut(s) 673, 934, 940
BccI CCATC 1 cut(s) 90
BceAI ACGGC 2 cut(s) 352, 928
BciT130I CCWGG 2 cut(s) 25, 712
BcnI CCSGG 2 cut(s) 629, 733
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 2 cut(s) 540, 988
BlpI GCTNAGC 1 cut(s) 315
Bme1390I CCNGG 4 cut(s) 25, 629, 712, 733
Bme18I GGWCC 3 cut(s) 27, 196, 654
BmgT120I GGNCC 8 cut(s) 27, 196, 472, 473, 497, 557, 558, 654
BmiI GGNNCC 9 cut(s) 19, 29, 474, 475, 559, 585, 605, 678, 888
BmrFI CCNGG 4 cut(s) 25, 629, 712, 733
BmsI GCATC 1 cut(s) 418
BmtI GCTAGC 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 444, 483
BplI GAGNNNNNCTC 2 cut(s) 374, 406
BpmI CTGGAG 1 cut(s) 705
Bpu10I CCTNAGC 1 cut(s) 650
Bpu1102I GCTNAGC 1 cut(s) 315
BpuMI CCSGG 2 cut(s) 629, 733
BsaHI GRCGYC 2 cut(s) 578, 620
BsaJI CCNNGG 3 cut(s) 345, 569, 628
BsaWI WCCGGW 2 cut(s) 606, 788
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 9 cut(s) 456, 527, 593, 634, 663, 717, 739, 781, 932
Bse118I RCCGGY 4 cut(s) 499, 586, 724, 797
Bse1I ACTGG 3 cut(s) 38, 450, 688
BseBI CCWGG 2 cut(s) 25, 712
BseDI CCNNGG 3 cut(s) 345, 569, 628
BseGI GGATG 1 cut(s) 82
BseLI CCNNNNNNNGG 9 cut(s) 456, 527, 593, 634, 663, 717, 739, 781, 932
BseMII CTCAG 3 cut(s) 306, 368, 641
BseNI ACTGG 3 cut(s) 38, 450, 688
BseRI GAGGAG 2 cut(s) 842, 911
BseSI GKGCMC 3 cut(s) 20, 476, 561
BseXI GCAGC 3 cut(s) 673, 934, 940
BseYI CCCAGC 1 cut(s) 593
Bsh1236I CGCG 2 cut(s) 571, 779
BshFI GGCC 4 cut(s) 474, 499, 559, 875
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 3 cut(s) 26, 645, 928
BslI CCNNNNNNNGG 9 cut(s) 456, 527, 593, 634, 663, 717, 739, 781, 932
BsmAI GTCTC 1 cut(s) 608
BsmBI CGTCTC 1 cut(s) 608
BsmFI GGGAC 3 cut(s) 26, 645, 928
BsmI GAATGC 1 cut(s) 742
BsnI GGCC 4 cut(s) 474, 499, 559, 875
Bsp120I GGGCCC 2 cut(s) 472, 557
Bsp1286I GDGCHC 4 cut(s) 20, 476, 561, 776
Bsp143I GATC 2 cut(s) 149, 375
Bsp1720I GCTNAGC 1 cut(s) 315
BspANI GGCC 4 cut(s) 474, 499, 559, 875
BspCNI CTCAG 3 cut(s) 307, 367, 642
BspFNI CGCG 2 cut(s) 571, 779
BspLI GGNNCC 9 cut(s) 19, 29, 474, 475, 559, 585, 605, 678, 888
BspOI GCTAGC 1 cut(s) 543
BspPI GGATC 2 cut(s) 144, 383
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 758
BsrFI RCCGGY 4 cut(s) 499, 586, 724, 797
BsrI ACTGG 3 cut(s) 38, 450, 688
BssAI RCCGGY 4 cut(s) 499, 586, 724, 797
BssECI CCNNGG 3 cut(s) 345, 569, 628
BssMI GATC 2 cut(s) 149, 375
BssNI GRCGYC 2 cut(s) 578, 620
Bst2UI CCWGG 2 cut(s) 25, 712
Bst4CI ACNGT 3 cut(s) 187, 703, 845
Bst6I CTCTTC 2 cut(s) 593, 888
BstACI GRCGYC 2 cut(s) 578, 620
BstC8I GCNNGC 3 cut(s) 312, 541, 588
BstDEI CTNAG 3 cut(s) 315, 354, 650
BstDSI CCRYGG 1 cut(s) 569
BstEII GGTNACC 2 cut(s) 720, 784
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 2 cut(s) 571, 779
BstKTI GATC 2 cut(s) 152, 378
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 2 cut(s) 149, 375
BstMWI GCNNNNNNNGC 6 cut(s) 15, 316, 364, 565, 577, 928
BstNI CCWGG 2 cut(s) 25, 712
BstPI GGTNACC 2 cut(s) 720, 784
BstSCI CCNGG 4 cut(s) 23, 627, 710, 731
BstSLI GKGCMC 3 cut(s) 20, 476, 561
BstUI CGCG 2 cut(s) 571, 779
BstV1I GCAGC 3 cut(s) 673, 934, 940
BstV2I GAAGAC 2 cut(s) 444, 483
BstX2I RGATCY 1 cut(s) 149
BstYI RGATCY 1 cut(s) 149
BsuRI GGCC 4 cut(s) 474, 499, 559, 875
BtgI CCRYGG 1 cut(s) 569
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 3 cut(s) 312, 541, 588
Cfr10I RCCGGY 4 cut(s) 499, 586, 724, 797
Cfr13I GGNCC 8 cut(s) 27, 196, 472, 473, 497, 557, 558, 654
Cfr42I CCGCGG 1 cut(s) 572
CseI GACGC 2 cut(s) 506, 586
Csp6I GTAC 1 cut(s) 394
CspCI CAANNNNNGTGG 2 cut(s) 403, 438
CviAII CATG 2 cut(s) 128, 658
CviQI GTAC 1 cut(s) 394
DdeI CTNAG 3 cut(s) 315, 354, 650
DpnI GATC 2 cut(s) 151, 377
DpnII GATC 2 cut(s) 149, 375
EaeI YGGCCR 1 cut(s) 873
Eam1104I CTCTTC 2 cut(s) 593, 888
EarI CTCTTC 2 cut(s) 593, 888
EciI GGCGGA 3 cut(s) 231, 305, 526
Eco24I GRGCYC 3 cut(s) 476, 561, 776
Eco47I GGWCC 3 cut(s) 27, 196, 654
Eco57I CTGAAG 1 cut(s) 912
Eco91I GGTNACC 2 cut(s) 720, 784
EcoO109I RGGNCCY 4 cut(s) 27, 196, 473, 557
EcoO65I GGTNACC 2 cut(s) 720, 784
EcoRII CCWGG 2 cut(s) 23, 710
EcoT38I GRGCYC 3 cut(s) 476, 561, 776
Esp3I CGTCTC 1 cut(s) 608
FaeI CATG 2 cut(s) 131, 661
FaiI YATR 2 cut(s) 129, 659
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 3 cut(s) 26, 645, 928
FatI CATG 2 cut(s) 127, 657
FauI CCCGC 5 cut(s) 71, 456, 733, 751, 784
FokI GGATG 1 cut(s) 69
FriOI GRGCYC 3 cut(s) 476, 561, 776
FspBI CTAG 2 cut(s) 540, 988
GsaI CCCAGC 1 cut(s) 597
GsuI CTGGAG 1 cut(s) 705
HaeIII GGCC 4 cut(s) 474, 499, 559, 875
HgaI GACGC 2 cut(s) 506, 586
Hin1I GRCGYC 2 cut(s) 578, 620
Hin1II CATG 2 cut(s) 131, 661
HinfI GANTC 3 cut(s) 638, 751, 941
HphI GGTGA 3 cut(s) 517, 714, 796
Hpy188I TCNGA 6 cut(s) 117, 205, 270, 346, 364, 459
Hpy99I CGWCG 5 cut(s) 406, 409, 622, 625, 914
HpyAV CCTTC 2 cut(s) 775, 931
HpyCH4III ACNGT 3 cut(s) 187, 703, 845
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 3 cut(s) 310, 425, 661
HpyF10VI GCNNNNNNNGC 6 cut(s) 15, 316, 364, 565, 577, 928
HpyF3I CTNAG 3 cut(s) 315, 354, 650
HpySE526I ACGT 1 cut(s) 620
Hsp92I GRCGYC 2 cut(s) 578, 620
Hsp92II CATG 2 cut(s) 131, 661
KroI GCCGGC 1 cut(s) 586
KroNI GCCGGC 1 cut(s) 588
KspI CCGCGG 1 cut(s) 572
Kzo9I GATC 2 cut(s) 149, 375
LmnI GCTCC 3 cut(s) 583, 886, 898
Lsp1109I GCAGC 3 cut(s) 673, 934, 940
LweI GCATC 1 cut(s) 418
MaeI CTAG 2 cut(s) 540, 988
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 3 cut(s) 720, 784, 845
MalI GATC 2 cut(s) 151, 377
MbiI CCGCTC 1 cut(s) 758
MboI GATC 2 cut(s) 149, 375
MflI RGATCY 1 cut(s) 149
MhlI GDGCHC 4 cut(s) 20, 476, 561, 776
MluCI AATT 5 cut(s) 213, 237, 283, 305, 467
MlyI GAGTC 1 cut(s) 950
MroNI GCCGGC 1 cut(s) 586
MspA1I CMGCKG 4 cut(s) 166, 571, 649, 664
MspR9I CCNGG 4 cut(s) 25, 629, 712, 733
Mva1269I GAATGC 1 cut(s) 742
MvaI CCWGG 2 cut(s) 25, 712
MvnI CGCG 2 cut(s) 571, 779
MwoI GCNNNNNNNGC 6 cut(s) 15, 316, 364, 565, 577, 928
NaeI GCCGGC 1 cut(s) 588
NciI CCSGG 2 cut(s) 629, 733
NdeII GATC 2 cut(s) 149, 375
NgoMIV GCCGGC 1 cut(s) 586
NheI GCTAGC 1 cut(s) 539
NlaIII CATG 2 cut(s) 131, 661
NlaIV GGNNCC 9 cut(s) 19, 29, 474, 475, 559, 585, 605, 678, 888
NmuCI GTSAC 2 cut(s) 720, 784
PcsI WCGNNNNNNNCGW 4 cut(s) 138, 398, 617, 713
PctI GAATGC 1 cut(s) 742
PdiI GCCGGC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 638, 751
PflFI GACNNNGTC 1 cut(s) 619
PleI GAGTC 1 cut(s) 949
PpsI GAGTC 1 cut(s) 949
PpuMI RGGWCCY 2 cut(s) 27, 196
Psp5II RGGWCCY 2 cut(s) 27, 196
Psp6I CCWGG 2 cut(s) 23, 710
PspEI GGTNACC 2 cut(s) 720, 784
PspFI CCCAGC 1 cut(s) 593
PspGI CCWGG 2 cut(s) 23, 710
PspN4I GGNNCC 9 cut(s) 19, 29, 474, 475, 559, 585, 605, 678, 888
PspOMI GGGCCC 2 cut(s) 472, 557
PspPI GGNCC 8 cut(s) 27, 196, 472, 473, 497, 557, 558, 654
PspPPI RGGWCCY 2 cut(s) 27, 196
PsuI RGATCY 1 cut(s) 149
PsyI GACNNNGTC 1 cut(s) 619
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 1 cut(s) 395
RsaNI GTAC 1 cut(s) 394
SacII CCGCGG 1 cut(s) 572
Sau3AI GATC 2 cut(s) 149, 375
Sau96I GGNCC 8 cut(s) 27, 196, 472, 473, 497, 557, 558, 654
SchI GAGTC 1 cut(s) 950
ScrFI CCNGG 4 cut(s) 25, 629, 712, 733
SduI GDGCHC 4 cut(s) 20, 476, 561, 776
SfaNI GCATC 1 cut(s) 418
Sfr303I CCGCGG 1 cut(s) 572
SgrBI CCGCGG 1 cut(s) 572
SinI GGWCC 3 cut(s) 27, 196, 654
Sse9I AATT 5 cut(s) 213, 237, 283, 305, 467
SspMI CTAG 2 cut(s) 540, 988
StyD4I CCNGG 4 cut(s) 23, 627, 710, 731
TaaI ACNGT 3 cut(s) 187, 703, 845
TaiI ACGT 1 cut(s) 623
TaqI TCGA 3 cut(s) 132, 716, 754
TasI AATT 5 cut(s) 213, 237, 283, 305, 467
TauI GCSGC 7 cut(s) 322, 325, 338, 568, 571, 593, 928
TfiI GAWTC 2 cut(s) 638, 751
TseFI GTSAC 2 cut(s) 720, 784
TseI GCWGC 3 cut(s) 661, 922, 928
Tsp45I GTSAC 2 cut(s) 720, 784
TspDTI ATGAA 1 cut(s) 967
TspGWI ACGGA 1 cut(s) 626
Tth111I GACNNNGTC 1 cut(s) 619
VpaK11BI GGWCC 3 cut(s) 27, 196, 654
XapI RAATTY 2 cut(s) 237, 283
XspI CTAG 2 cut(s) 540, 988
ZraI GACGTC 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.