Rroxscaffold_2G00088240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0018466
Physical Location & Seq
Reverse (-)
10239129 .. 10240109
981 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00088240.1

Sequence Viewer

Length: 981 bp
ATGGGTTGCTGTTTGGGCACCGCCAGGACCCCAAAACCAGTCCCACCACACCCCAACCCCCGCCACCACCACCATCCCCACTACCACGCCAAGAAACCCAACTCTCTGACCCAATCCCATGTCGAAAAACCCGAAACCAGATCCCCACCACCACCGCTGGTTGTGGAAGAAGAAACTGTGAAGGAGGTCCTTTCCGAAACCCCAGTTTTCAAGCCACAAAACCCAGAAATTCCGCCAGAGAAAAACACCCTTTCGCCTCCGAAAGAAGAACCAAATTTTGCGGAAGAAGAACCCAAATTGCAAGCTGAGCCGCCGCCCAAAGAGGCGGCGGTTTCCGAGGCTTCTCAGCTTTCAGAGCCGTGTGGGATCAGCGAGAGCTACTCGTACTCAACGACTACCACCACCACTACTATTGCAGATGCCAGAGAAGACGAAGCTACCAGTAATCGGAAGCGGGAATTGGGCCCCAGAGCAAATGGGTCTTCTGGGCCGGTGGTGCGGCGGAAGCGTCCTTACTCCGGCGAGGTTGCTAGCCAGAGAGAGAGAGGGCCCAAGCCGCCGCGGAGGACGCCGGAGCCGGCGGCTGGGAAGAGGAACCGGACGGAGACGACGTCGTTACGGGGACGGGAATCGGGTCAGCTGAGGACCATGCAGCGGAGTGGTGCGGTTCCTACTGGAGTGAGGCGTGAAACGGTGTCGTCCAGGTCGAGGTCACCGGCGACCCGGAATGCGGGTGGAGTGAATCGAGCGGGTAGAGGAAAGAGCCCCGCGAAGGTGACCGGACGAGCCGGTGGCAGTTCTTCCTCGGTGGGTGTAGAGGAGAGTGAGAAGAAGGGTAACAACGAGCCTAAAGAGGAAGTGTTGGCCGGTAAAAGGGAGCCTGAAGAGGAGCAACGAAACGACGGAGTTTCGCAGCCGCAGCAGGGGAAGGAGTCCCTTGACAACCCTCTGGTTTCACTAGAGTGCTTCATCTTTGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

326

Amino Acids

35.46

Weight (kDa)

9.21

Isoelectric Point (pI)

72.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018466)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g44980
prunus_persica Prupe.3G233700_v2.0.a1
pyrus_communis pycom09g01690
rosa_chinensis RchiOBHm_Chr2g0162231
rosa_laevigata RLG00000021328
rosa_multiflora Rmu_sc0004020.1_g000028
rosa_roxburghii Rroxscaffold_2G00088240
rosa_samantha Rh2AG561700 Rh2CG545000
rosa_wichuraiana Rw2G046520

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 614
AccB1I GGYRCC 1 cut(s) 17
AccBSI CCGCTC 1 cut(s) 749
AccII CGCG 2 cut(s) 562, 770
AclWI GGATC 2 cut(s) 135, 374
AcoI YGGCCR 1 cut(s) 864
AcsI RAATTY 2 cut(s) 228, 274
AcuI CTGAAG 1 cut(s) 903
AcyI GRCGYC 2 cut(s) 569, 611
AfaI GTAC 1 cut(s) 386
AfiI CCNNNNNNNGG 9 cut(s) 447, 518, 584, 654, 708, 730, 772, 873, 923
AgsI TTSAA 1 cut(s) 211
AjnI CCWGG 2 cut(s) 23, 701
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AleI CACNNNNGTG 1 cut(s) 961
AluBI AGCT 5 cut(s) 305, 349, 378, 437, 640
AluI AGCT 5 cut(s) 305, 349, 378, 437, 640
Alw26I GTCTC 1 cut(s) 599
AlwI GGATC 2 cut(s) 135, 374
AoxI GGCC 4 cut(s) 463, 488, 548, 864
ApaI GGGCCC 2 cut(s) 467, 552
ApeKI GCWGC 3 cut(s) 652, 913, 919
ApoI RAATTY 2 cut(s) 228, 274
AspS9I GGNCC 8 cut(s) 27, 187, 463, 464, 488, 548, 549, 645
AsuC2I CCSGG 1 cut(s) 724
AsuHPI GGTGA 2 cut(s) 705, 787
AsuNHI GCTAGC 1 cut(s) 530
AvaII GGWCC 3 cut(s) 27, 187, 645
BaeGI GKGCMC 3 cut(s) 20, 467, 552
BanI GGYRCC 1 cut(s) 17
BanII GRGCYC 3 cut(s) 467, 552, 767
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbsI GAAGAC 2 cut(s) 435, 474
BbvCI CCTCAGC 1 cut(s) 641
BbvI GCAGC 3 cut(s) 664, 925, 931
BccI CCATC 1 cut(s) 81
BceAI ACGGC 1 cut(s) 343
BciT130I CCWGG 2 cut(s) 25, 703
BcnI CCSGG 1 cut(s) 724
BcoDI GTCTC 1 cut(s) 599
BfaI CTAG 3 cut(s) 531, 959, 979
BlpI GCTNAGC 1 cut(s) 306
Bme1390I CCNGG 3 cut(s) 25, 703, 724
Bme18I GGWCC 3 cut(s) 27, 187, 645
BmgT120I GGNCC 8 cut(s) 27, 187, 463, 464, 488, 548, 549, 645
BmiI GGNNCC 9 cut(s) 19, 29, 465, 466, 550, 576, 596, 669, 879
BmrFI CCNGG 3 cut(s) 25, 703, 724
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 1 cut(s) 409
BmtI GCTAGC 1 cut(s) 534
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 2 cut(s) 435, 474
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 696
Bpu10I CCTNAGC 1 cut(s) 641
Bpu1102I GCTNAGC 1 cut(s) 306
BpuMI CCSGG 1 cut(s) 724
BsaHI GRCGYC 2 cut(s) 569, 611
BsaJI CCNNGG 3 cut(s) 336, 560, 804
BsaWI WCCGGW 2 cut(s) 597, 779
BsaXI ACNNNNNCTCC 2 cut(s) 596, 626
Bsc4I CCNNNNNNNGG 9 cut(s) 447, 518, 584, 654, 708, 730, 772, 873, 923
Bse118I RCCGGY 5 cut(s) 490, 577, 715, 788, 866
Bse1I ACTGG 4 cut(s) 38, 203, 441, 679
BseBI CCWGG 2 cut(s) 25, 703
BseDI CCNNGG 3 cut(s) 336, 560, 804
BseGI GGATG 1 cut(s) 73
BseLI CCNNNNNNNGG 9 cut(s) 447, 518, 584, 654, 708, 730, 772, 873, 923
BseMII CTCAG 3 cut(s) 297, 359, 632
BseNI ACTGG 4 cut(s) 38, 203, 441, 679
BseRI GAGGAG 2 cut(s) 833, 902
BseSI GKGCMC 3 cut(s) 20, 467, 552
BseXI GCAGC 3 cut(s) 664, 925, 931
BseYI CCCAGC 1 cut(s) 584
Bsh1236I CGCG 2 cut(s) 562, 770
BshFI GGCC 4 cut(s) 465, 490, 550, 866
BshNI GGYRCC 1 cut(s) 17
BslFI GGGAC 3 cut(s) 26, 636, 919
BslI CCNNNNNNNGG 9 cut(s) 447, 518, 584, 654, 708, 730, 772, 873, 923
BsmAI GTCTC 1 cut(s) 599
BsmBI CGTCTC 1 cut(s) 599
BsmFI GGGAC 3 cut(s) 26, 636, 919
BsmI GAATGC 1 cut(s) 733
BsnI GGCC 4 cut(s) 465, 490, 550, 866
Bsp120I GGGCCC 2 cut(s) 463, 548
Bsp1286I GDGCHC 4 cut(s) 20, 467, 552, 767
Bsp143I GATC 2 cut(s) 140, 366
Bsp1720I GCTNAGC 1 cut(s) 306
BspANI GGCC 4 cut(s) 465, 490, 550, 866
BspCNI CTCAG 3 cut(s) 298, 358, 633
BspFNI CGCG 2 cut(s) 562, 770
BspLI GGNNCC 9 cut(s) 19, 29, 465, 466, 550, 576, 596, 669, 879
BspOI GCTAGC 1 cut(s) 534
BspPI GGATC 2 cut(s) 135, 374
BspT107I GGYRCC 1 cut(s) 17
BsrBI CCGCTC 1 cut(s) 749
BsrFI RCCGGY 5 cut(s) 490, 577, 715, 788, 866
BsrI ACTGG 4 cut(s) 38, 203, 441, 679
BssAI RCCGGY 5 cut(s) 490, 577, 715, 788, 866
BssECI CCNNGG 3 cut(s) 336, 560, 804
BssMI GATC 2 cut(s) 140, 366
BssNI GRCGYC 2 cut(s) 569, 611
Bst2UI CCWGG 2 cut(s) 25, 703
Bst4CI ACNGT 2 cut(s) 178, 694
Bst6I CTCTTC 2 cut(s) 584, 879
BstACI GRCGYC 2 cut(s) 569, 611
BstC8I GCNNGC 3 cut(s) 303, 532, 579
BstDEI CTNAG 3 cut(s) 306, 345, 641
BstDSI CCRYGG 1 cut(s) 560
BstEII GGTNACC 2 cut(s) 711, 775
BstF5I GGATG 1 cut(s) 73
BstFNI CGCG 2 cut(s) 562, 770
BstKTI GATC 2 cut(s) 143, 369
BstMAI GTCTC 1 cut(s) 599
BstMBI GATC 2 cut(s) 140, 366
BstMWI GCNNNNNNNGC 8 cut(s) 15, 307, 355, 496, 505, 556, 568, 919
BstNI CCWGG 2 cut(s) 25, 703
BstPI GGTNACC 2 cut(s) 711, 775
BstSCI CCNGG 3 cut(s) 23, 701, 722
BstSLI GKGCMC 3 cut(s) 20, 467, 552
BstUI CGCG 2 cut(s) 562, 770
BstV1I GCAGC 3 cut(s) 664, 925, 931
BstV2I GAAGAC 2 cut(s) 435, 474
BstX2I RGATCY 1 cut(s) 140
BstYI RGATCY 1 cut(s) 140
BsuRI GGCC 4 cut(s) 465, 490, 550, 866
BtgI CCRYGG 1 cut(s) 560
BtsCI GGATG 1 cut(s) 73
Cac8I GCNNGC 3 cut(s) 303, 532, 579
Cfr10I RCCGGY 5 cut(s) 490, 577, 715, 788, 866
Cfr13I GGNCC 8 cut(s) 27, 187, 463, 464, 488, 548, 549, 645
Cfr42I CCGCGG 1 cut(s) 563
CseI GACGC 2 cut(s) 497, 577
Csp6I GTAC 1 cut(s) 385
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 119, 649
CviQI GTAC 1 cut(s) 385
DdeI CTNAG 3 cut(s) 306, 345, 641
DpnI GATC 2 cut(s) 142, 368
DpnII GATC 2 cut(s) 140, 366
EaeI YGGCCR 1 cut(s) 864
Eam1104I CTCTTC 2 cut(s) 584, 879
EarI CTCTTC 2 cut(s) 584, 879
EciI GGCGGA 2 cut(s) 222, 517
Eco24I GRGCYC 3 cut(s) 467, 552, 767
Eco47I GGWCC 3 cut(s) 27, 187, 645
Eco57I CTGAAG 1 cut(s) 903
Eco91I GGTNACC 2 cut(s) 711, 775
EcoO109I RGGNCCY 4 cut(s) 27, 187, 464, 548
EcoO65I GGTNACC 2 cut(s) 711, 775
EcoRII CCWGG 2 cut(s) 23, 701
EcoT38I GRGCYC 3 cut(s) 467, 552, 767
Esp3I CGTCTC 1 cut(s) 599
FaeI CATG 2 cut(s) 122, 652
FaiI YATR 2 cut(s) 120, 650
FaqI GGGAC 3 cut(s) 26, 636, 919
FatI CATG 2 cut(s) 118, 648
FauI CCCGC 5 cut(s) 68, 447, 724, 742, 775
FokI GGATG 1 cut(s) 60
FriOI GRGCYC 3 cut(s) 467, 552, 767
FspBI CTAG 3 cut(s) 531, 959, 979
GsaI CCCAGC 1 cut(s) 588
GsuI CTGGAG 1 cut(s) 696
HaeIII GGCC 4 cut(s) 465, 490, 550, 866
HgaI GACGC 2 cut(s) 497, 577
Hin1I GRCGYC 2 cut(s) 569, 611
Hin1II CATG 2 cut(s) 122, 652
HinfI GANTC 3 cut(s) 629, 742, 932
HphI GGTGA 2 cut(s) 705, 787
Hpy188I TCNGA 6 cut(s) 108, 196, 261, 337, 355, 450
Hpy99I CGWCG 3 cut(s) 613, 616, 905
HpyAV CCTTC 4 cut(s) 175, 766, 826, 922
HpyCH4III ACNGT 2 cut(s) 178, 694
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 3 cut(s) 301, 416, 652
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 307, 355, 496, 505, 556, 568, 919
HpyF3I CTNAG 3 cut(s) 306, 345, 641
HpySE526I ACGT 1 cut(s) 611
Hsp92I GRCGYC 2 cut(s) 569, 611
Hsp92II CATG 2 cut(s) 122, 652
KroI GCCGGC 1 cut(s) 577
KroNI GCCGGC 1 cut(s) 579
KspI CCGCGG 1 cut(s) 563
Kzo9I GATC 2 cut(s) 140, 366
LmnI GCTCC 3 cut(s) 574, 877, 889
Lsp1109I GCAGC 3 cut(s) 664, 925, 931
LweI GCATC 1 cut(s) 409
MaeI CTAG 3 cut(s) 531, 959, 979
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 4 cut(s) 615, 711, 775, 836
MalI GATC 2 cut(s) 142, 368
MbiI CCGCTC 1 cut(s) 749
MboI GATC 2 cut(s) 140, 366
MflI RGATCY 1 cut(s) 140
MhlI GDGCHC 4 cut(s) 20, 467, 552, 767
MluCI AATT 4 cut(s) 228, 274, 296, 458
MlyI GAGTC 1 cut(s) 941
MroNI GCCGGC 1 cut(s) 577
MslI CAYNNNNRTG 1 cut(s) 961
MspA1I CMGCKG 4 cut(s) 157, 562, 640, 655
MspR9I CCNGG 3 cut(s) 25, 703, 724
Mva1269I GAATGC 1 cut(s) 733
MvaI CCWGG 2 cut(s) 25, 703
MvnI CGCG 2 cut(s) 562, 770
MwoI GCNNNNNNNGC 8 cut(s) 15, 307, 355, 496, 505, 556, 568, 919
NaeI GCCGGC 1 cut(s) 579
NciI CCSGG 1 cut(s) 724
NdeII GATC 2 cut(s) 140, 366
NgoMIV GCCGGC 1 cut(s) 577
NheI GCTAGC 1 cut(s) 530
NlaIII CATG 2 cut(s) 122, 652
NlaIV GGNNCC 9 cut(s) 19, 29, 465, 466, 550, 576, 596, 669, 879
NmuCI GTSAC 2 cut(s) 711, 775
OliI CACNNNNGTG 1 cut(s) 961
PcsI WCGNNNNNNNCGW 4 cut(s) 129, 389, 608, 704
PctI GAATGC 1 cut(s) 733
PdiI GCCGGC 1 cut(s) 579
PfeI GAWTC 2 cut(s) 629, 742
PflFI GACNNNGTC 1 cut(s) 610
PleI GAGTC 1 cut(s) 940
PpsI GAGTC 1 cut(s) 940
PpuMI RGGWCCY 2 cut(s) 27, 187
Psp5II RGGWCCY 2 cut(s) 27, 187
Psp6I CCWGG 2 cut(s) 23, 701
PspEI GGTNACC 2 cut(s) 711, 775
PspFI CCCAGC 1 cut(s) 584
PspGI CCWGG 2 cut(s) 23, 701
PspN4I GGNNCC 9 cut(s) 19, 29, 465, 466, 550, 576, 596, 669, 879
PspOMI GGGCCC 2 cut(s) 463, 548
PspPI GGNCC 8 cut(s) 27, 187, 463, 464, 488, 548, 549, 645
PspPPI RGGWCCY 2 cut(s) 27, 187
PsuI RGATCY 1 cut(s) 140
PsyI GACNNNGTC 1 cut(s) 610
PvuII CAGCTG 1 cut(s) 640
RsaI GTAC 1 cut(s) 386
RsaNI GTAC 1 cut(s) 385
RseI CAYNNNNRTG 1 cut(s) 961
SacII CCGCGG 1 cut(s) 563
Sau3AI GATC 2 cut(s) 140, 366
Sau96I GGNCC 8 cut(s) 27, 187, 463, 464, 488, 548, 549, 645
SchI GAGTC 1 cut(s) 941
ScrFI CCNGG 3 cut(s) 25, 703, 724
SduI GDGCHC 4 cut(s) 20, 467, 552, 767
SfaNI GCATC 1 cut(s) 409
Sfr303I CCGCGG 1 cut(s) 563
SgrAI CRCCGGYG 1 cut(s) 715
SgrBI CCGCGG 1 cut(s) 563
SinI GGWCC 3 cut(s) 27, 187, 645
SmiMI CAYNNNNRTG 1 cut(s) 961
Sse9I AATT 4 cut(s) 228, 274, 296, 458
SspMI CTAG 3 cut(s) 531, 959, 979
StyD4I CCNGG 3 cut(s) 23, 701, 722
TaaI ACNGT 2 cut(s) 178, 694
TaiI ACGT 1 cut(s) 614
TaqI TCGA 3 cut(s) 123, 707, 745
TasI AATT 4 cut(s) 228, 274, 296, 458
TauI GCSGC 8 cut(s) 313, 316, 329, 502, 559, 562, 584, 919
TfiI GAWTC 2 cut(s) 629, 742
TseFI GTSAC 2 cut(s) 711, 775
TseI GCWGC 3 cut(s) 652, 913, 919
Tsp45I GTSAC 2 cut(s) 711, 775
TspDTI ATGAA 1 cut(s) 958
TspGWI ACGGA 2 cut(s) 617, 918
Tth111I GACNNNGTC 1 cut(s) 610
VpaK11BI GGWCC 3 cut(s) 27, 187, 645
XapI RAATTY 2 cut(s) 228, 274
XspI CTAG 3 cut(s) 531, 959, 979
ZraI GACGTC 1 cut(s) 612
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.