Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0017703

Physical Location & Seq

Genomic Coordinates Forward (+)

35857181 .. 35857909

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47191.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGCGGAAGCTCACGCGCGAAACAACCAATACCAGCTCCGTTCTAATTCCGGTCTGGTCCTGACGTCCGACTCTCGATCACGTGACACTCACGCGCCAAGCGGCGAGGCTGAGTCTCTCCGCGGCAGAATCGACCCCAATCACTTCGGTGATAGGGCTCACACCGCAAGGCCGAAGCGTCACCGCCGCGACCCTACTCCGGAACCCGCTTTGATTTACGGTTCGACCAAACGGTGTCGTTTTTCGGAAGAGAGCGTGCTGACTACGATGGAGGAAGACGGCGCCGTTTACAGGCCGAAGACGAAGGAGACTCGGGCTGCGTACGAGGCCTTGCTTCACCTGATCCGGCAGCGGTTGGGAGACCAGCCGGCGAGCGTTGTGCACGGCGCCGCCGACGAGGTTCTGGCCGTGGTTAAAGGTAAGAGCTTTGATAAGAGAAAAGAGATTGAGAATTTGTTGAATTCAGTTGGTGATGATTTCTTTGATCAGTTTGTTCAGATTGGGAAGCTCATCACCGATTACGGTGGTGATGATGACGTGGCTGGTTGTGATGATGTTGATTTTGATGTCGGAGTTTCGGTTGATTTCGAAGAAGAGGAGGAGGATGACAATGGTGTAGGTATGGTTGTGGAGGAGGAGGATGAGGAGGAGGAGGAGCAAAAGGAGTTGTCGGTGGGCGGTGGTGCCCCGATGAGTGTTGATGGTGATGATGTGATGGTGGGAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000245 GO:0000354 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005682 GO:0005911 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009506 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0022613 GO:0022618 GO:0030054 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0042623 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045292 GO:0046483 GO:0046540 GO:0055044 GO:0065003 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097525 GO:0097526 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C Sec63

Protein Analysis

243

Amino Acids

26.72

Weight (kDa)

4.52

Isoelectric Point (pI)

49.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BRR2_plug	PF21188	104 - 166	6.7e-08	Pre-mRNA-splicing helicase BRR2 plug domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017703)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g47191
pyrus_communis	pycom12g23590
rosa_laevigata	RLG00000000403 RLG00000012895 RLG00000012897
rosa_multiflora	Rmu_co8119870.1_g000001 Rmu_sc0008044.1_g000011
rosa_samantha	Rh3BG010400 Rh3CG010100 Rh3DG010800 Rh7AG391900 Rh7CG410800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	68
AccB1I	GGYRCC	3 cut(s)	281, 386, 683
AccII	CGCG	5 cut(s)	17, 19, 95, 123, 189
AccIII	TCCGGA	1 cut(s)	199
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	405
AcsI	RAATTY	2 cut(s)	451, 460
AcvI	CACGTG	1 cut(s)	83
AcyI	GRCGYC	3 cut(s)	65, 282, 387
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	2 cut(s)	199, 291
AgsI	TTSAA	1 cut(s)	460
AjiI	CACGTC	1 cut(s)	538
AleI	CACNNNNGTG	1 cut(s)	147
AluBI	AGCT	4 cut(s)	11, 37, 426, 508
AluI	AGCT	4 cut(s)	11, 37, 426, 508
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	3 cut(s)	120, 302, 354
Alw44I	GTGCAC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	312
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	4 cut(s)	170, 293, 327, 405
ApaLI	GTGCAC	1 cut(s)	380
ApeKI	GCWGC	2 cut(s)	317, 349
ApoI	RAATTY	2 cut(s)	451, 460
AspLEI	GCGC	4 cut(s)	19, 97, 284, 389
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	7 cut(s)	161, 173, 329, 482, 505, 539, 716
AsuII	TTCGAA	1 cut(s)	588
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	58
BaeGI	GKGCMC	2 cut(s)	384, 688
BanI	GGYRCC	3 cut(s)	281, 386, 683
BanII	GRGCYC	1 cut(s)	160
BbrPI	CACGTG	1 cut(s)	83
BbsI	GAAGAC	2 cut(s)	282, 305
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	2 cut(s)	304, 361
BccI	CCATC	3 cut(s)	262, 695, 709
BceAI	ACGGC	4 cut(s)	269, 295, 392, 400
BcgI	CGANNNNNNTGC	2 cut(s)	361, 395
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	3 cut(s)	120, 302, 354
BfoI	RGCGCY	2 cut(s)	285, 390
BisI	GCNGC	6 cut(s)	103, 124, 187, 318, 350, 390
BlsI	GCNGC	6 cut(s)	104, 125, 188, 319, 351, 391
Bme18I	GGWCC	1 cut(s)	58
BmeT110I	CYCGRG	1 cut(s)	312
BmgBI	CACGTC	1 cut(s)	538
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	4 cut(s)	204, 283, 388, 685
BpiI	GAAGAC	2 cut(s)	282, 305
Bpu14I	TTCGAA	1 cut(s)	588
BsaAI	YACGTR	1 cut(s)	83
BsaHI	GRCGYC	3 cut(s)	65, 282, 387
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	121, 408
BsaWI	WCCGGW	2 cut(s)	50, 199
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	2 cut(s)	199, 291
Bse118I	RCCGGY	1 cut(s)	367
BseAI	TCCGGA	1 cut(s)	199
BseDI	CCNNGG	2 cut(s)	121, 408
BseGI	GGATG	2 cut(s)	610, 646
BseLI	CCNNNNNNNGG	2 cut(s)	199, 291
BseMII	CTCAG	1 cut(s)	102
BseRI	GAGGAG	8 cut(s)	611, 614, 647, 650, 659, 662, 665, 668
BseSI	GKGCMC	2 cut(s)	384, 688
BseXI	GCAGC	2 cut(s)	304, 361
Bsh1236I	CGCG	5 cut(s)	17, 19, 95, 123, 189
BshFI	GGCC	4 cut(s)	172, 295, 329, 407
BshNI	GGYRCC	3 cut(s)	281, 386, 683
BsiHKAI	GWGCWC	1 cut(s)	384
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	4 cut(s)	51, 200, 346, 368
BsiWI	CGTACG	1 cut(s)	321
BslI	CCNNNNNNNGG	2 cut(s)	199, 291
BsmAI	GTCTC	3 cut(s)	120, 302, 354
BsnI	GGCC	4 cut(s)	172, 295, 329, 407
Bso31I	GGTCTC	1 cut(s)	354
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	588
Bsp1286I	GDGCHC	3 cut(s)	160, 384, 688
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	3 cut(s)	77, 342, 484
BspANI	GGCC	4 cut(s)	172, 295, 329, 407
BspCNI	CTCAG	1 cut(s)	103
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	5 cut(s)	17, 19, 95, 123, 189
BspLI	GGNNCC	4 cut(s)	204, 283, 388, 685
BspPI	GGATC	1 cut(s)	337
BspT104I	TTCGAA	1 cut(s)	588
BspT107I	GGYRCC	3 cut(s)	281, 386, 683
BspTNI	GGTCTC	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	367
BssAI	RCCGGY	1 cut(s)	367
BssECI	CCNNGG	2 cut(s)	121, 408
BssMI	GATC	3 cut(s)	77, 342, 484
BssNI	GRCGYC	3 cut(s)	65, 282, 387
Bst4CI	ACNGT	3 cut(s)	221, 234, 524
Bst6I	CTCTTC	2 cut(s)	243, 588
BstACI	GRCGYC	3 cut(s)	65, 282, 387
BstBAI	YACGTR	1 cut(s)	83
BstBI	TTCGAA	1 cut(s)	588
BstC8I	GCNNGC	3 cut(s)	257, 369, 373
BstDEI	CTNAG	1 cut(s)	111
BstDSI	CCRYGG	2 cut(s)	121, 408
BstF5I	GGATG	2 cut(s)	610, 646
BstFNI	CGCG	5 cut(s)	17, 19, 95, 123, 189
BstH2I	RGCGCY	2 cut(s)	285, 390
BstHHI	GCGC	4 cut(s)	19, 97, 284, 389
BstKTI	GATC	3 cut(s)	80, 345, 487
BstMAI	GTCTC	3 cut(s)	120, 302, 354
BstMBI	GATC	3 cut(s)	77, 342, 484
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 326
BstSLI	GKGCMC	2 cut(s)	384, 688
BstUI	CGCG	5 cut(s)	17, 19, 95, 123, 189
BstV1I	GCAGC	2 cut(s)	304, 361
BstV2I	GAAGAC	2 cut(s)	282, 305
BsuRI	GGCC	4 cut(s)	172, 295, 329, 407
BtgI	CCRYGG	2 cut(s)	121, 408
BtrI	CACGTC	1 cut(s)	538
BtsCI	GGATG	2 cut(s)	610, 646
Cac8I	GCNNGC	3 cut(s)	257, 369, 373
CfoI	GCGC	4 cut(s)	19, 97, 284, 389
Cfr10I	RCCGGY	1 cut(s)	367
Cfr13I	GGNCC	1 cut(s)	58
Cfr42I	CCGCGG	1 cut(s)	124
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	1 cut(s)	322
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	1 cut(s)	111
DinI	GGCGCC	2 cut(s)	283, 388
DpnI	GATC	3 cut(s)	79, 344, 486
DpnII	GATC	3 cut(s)	77, 342, 484
EaeI	YGGCCR	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	243, 588
EarI	CTCTTC	2 cut(s)	243, 588
EciI	GGCGGA	1 cut(s)	20
Eco147I	AGGCCT	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	160
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	1 cut(s)	58
Eco72I	CACGTG	1 cut(s)	83
Eco88I	CYCGRG	1 cut(s)	312
EcoRI	GAATTC	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	160
EgeI	GGCGCC	2 cut(s)	283, 388
EheI	GGCGCC	2 cut(s)	283, 388
FaiI	YATR	1 cut(s)	623
FauI	CCCGC	1 cut(s)	214
FbaI	TGATCA	1 cut(s)	484
Fnu4HI	GCNGC	6 cut(s)	103, 124, 187, 318, 350, 390
FokI	GGATG	2 cut(s)	617, 653
FriOI	GRGCYC	1 cut(s)	160
Fsp4HI	GCNGC	6 cut(s)	103, 124, 187, 318, 350, 390
GlaI	GCGC	4 cut(s)	18, 96, 283, 388
GluI	GCNGC	6 cut(s)	103, 124, 187, 318, 350, 390
HaeII	RGCGCY	2 cut(s)	285, 390
HaeIII	GGCC	4 cut(s)	172, 295, 329, 407
HapII	CCGG	4 cut(s)	51, 200, 346, 368
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	4 cut(s)	19, 97, 284, 389
Hin1I	GRCGYC	3 cut(s)	65, 282, 387
Hin6I	GCGC	4 cut(s)	17, 95, 282, 387
HinP1I	GCGC	4 cut(s)	17, 95, 282, 387
HinfI	GANTC	4 cut(s)	71, 113, 129, 310
HpaII	CCGG	4 cut(s)	51, 200, 346, 368
HphI	GGTGA	7 cut(s)	161, 173, 329, 482, 505, 539, 716
Hpy166II	GTNNAC	2 cut(s)	289, 382
Hpy188I	TCNGA	4 cut(s)	70, 247, 498, 572
Hpy188III	TCNNGA	3 cut(s)	61, 75, 200
Hpy8I	GTNNAC	2 cut(s)	289, 382
Hpy99I	CGWCG	1 cut(s)	398
HpyAV	CCTTC	1 cut(s)	298
HpyCH4III	ACNGT	3 cut(s)	221, 234, 524
HpyCH4IV	ACGT	3 cut(s)	65, 82, 537
HpyCH4V	TGCA	1 cut(s)	382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 326
HpyF3I	CTNAG	1 cut(s)	111
HpySE526I	ACGT	3 cut(s)	65, 82, 537
Hsp92I	GRCGYC	3 cut(s)	65, 282, 387
HspAI	GCGC	4 cut(s)	17, 95, 282, 387
KasI	GGCGCC	2 cut(s)	281, 386
Kpn2I	TCCGGA	1 cut(s)	199
KroI	GCCGGC	1 cut(s)	367
KroNI	GCCGGC	1 cut(s)	369
Ksp22I	TGATCA	1 cut(s)	484
KspI	CCGCGG	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	77, 342, 484
LmnI	GCTCC	2 cut(s)	42, 655
Lsp1109I	GCAGC	2 cut(s)	304, 361
MaeII	ACGT	3 cut(s)	65, 82, 537
MaeIII	GTNAC	2 cut(s)	83, 179
MalI	GATC	3 cut(s)	79, 344, 486
MboI	GATC	3 cut(s)	77, 342, 484
MboII	GAAGA	5 cut(s)	260, 287, 310, 602, 605
MhlI	GDGCHC	3 cut(s)	160, 384, 688
MluCI	AATT	3 cut(s)	46, 451, 460
Mly113I	GGCGCC	2 cut(s)	282, 387
MlyI	GAGTC	3 cut(s)	65, 122, 304
MmeI	TCCRAC	2 cut(s)	93, 550
MroI	TCCGGA	1 cut(s)	199
MroNI	GCCGGC	1 cut(s)	367
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	2 cut(s)	123, 352
MspI	CCGG	4 cut(s)	51, 200, 346, 368
MvnI	CGCG	5 cut(s)	17, 19, 95, 123, 189
MwoI	GCNNNNNNNGC	2 cut(s)	164, 326
NaeI	GCCGGC	1 cut(s)	369
NarI	GGCGCC	2 cut(s)	282, 387
NdeII	GATC	3 cut(s)	77, 342, 484
NgoMIV	GCCGGC	1 cut(s)	367
NlaIV	GGNNCC	4 cut(s)	204, 283, 388, 685
NmuCI	GTSAC	2 cut(s)	83, 179
NspV	TTCGAA	1 cut(s)	588
OliI	CACNNNNGTG	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	329
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdiI	GCCGGC	1 cut(s)	369
PfeI	GAWTC	1 cut(s)	129
Pfl23II	CGTACG	1 cut(s)	321
PkrI	GCNGC	6 cut(s)	104, 125, 188, 319, 351, 391
PleI	GAGTC	3 cut(s)	65, 121, 304
PluTI	GGCGCC	2 cut(s)	285, 390
PmaCI	CACGTG	1 cut(s)	83
PmlI	CACGTG	1 cut(s)	83
PpsI	GAGTC	3 cut(s)	65, 121, 304
Ppu21I	YACGTR	1 cut(s)	83
PspCI	CACGTG	1 cut(s)	83
PspLI	CGTACG	1 cut(s)	321
PspN4I	GGNNCC	4 cut(s)	204, 283, 388, 685
PspPI	GGNCC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	147
SacII	CCGCGG	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	6 cut(s)	103, 124, 187, 318, 350, 390
Sau3AI	GATC	3 cut(s)	77, 342, 484
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	3 cut(s)	65, 122, 304
SduI	GDGCHC	3 cut(s)	160, 384, 688
SfoI	GGCGCC	2 cut(s)	283, 388
Sfr303I	CCGCGG	1 cut(s)	124
SfuI	TTCGAA	1 cut(s)	588
SgrBI	CCGCGG	1 cut(s)	124
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	46, 451, 460
SseBI	AGGCCT	1 cut(s)	329
SspDI	GGCGCC	2 cut(s)	281, 386
StuI	AGGCCT	1 cut(s)	329
TaaI	ACNGT	3 cut(s)	221, 234, 524
TaiI	ACGT	3 cut(s)	68, 85, 540
TaqI	TCGA	4 cut(s)	76, 132, 224, 588
TasI	AATT	3 cut(s)	46, 451, 460
TauI	GCSGC	4 cut(s)	105, 126, 189, 392
TfiI	GAWTC	1 cut(s)	129
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TseFI	GTSAC	2 cut(s)	83, 179
TseI	GCWGC	2 cut(s)	317, 349
Tsp45I	GTSAC	2 cut(s)	83, 179
TspGWI	ACGGA	1 cut(s)	29
VneI	GTGCAC	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	2 cut(s)	451, 460
ZraI	GACGTC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.